Experiment set3S466 for Lysobacter sp. OAE881

Compare to:

Ying_OrganicAcid7 rep A; time point 1

200 most important genes:

  gene name fitness t score description  
ABIE51_RS14555 -4.1 -2.8 M15 family metallopeptidase compare
ABIE51_RS04310 -3.9 -5.7 glycosyltransferase compare
ABIE51_RS16260 -3.8 -4.5 hypothetical protein compare
ABIE51_RS18545 -3.3 -2.4 DUF6249 domain-containing protein compare
ABIE51_RS16485 -2.9 -3.1 adenosylhomocysteinase compare
ABIE51_RS09365 -2.8 -4.9 glycosyltransferase family 4 protein compare
ABIE51_RS14070 -2.8 -6.6 glycosyltransferase family 9 protein compare
ABIE51_RS02300 -2.8 -7.8 lauroyl acyltransferase compare
ABIE51_RS09065 -2.7 -12.5 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE51_RS03935 -2.7 -8.5 hypothetical protein compare
ABIE51_RS17630 -2.7 -8.0 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase compare
ABIE51_RS17190 -2.6 -3.5 penicillin-binding protein 1A compare
ABIE51_RS04390 -2.6 -11.8 glycoside hydrolase family 99-like domain-containing protein compare
ABIE51_RS15615 -2.6 -10.5 glucose-1-phosphate thymidylyltransferase RfbA compare
ABIE51_RS02280 -2.5 -7.8 CDP-glycerol glycerophosphotransferase family protein compare
ABIE51_RS04370 -2.5 -10.4 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABIE51_RS06340 -2.3 -8.8 hypothetical protein compare
ABIE51_RS15620 -2.3 -7.8 dTDP-glucose 4,6-dehydratase compare
ABIE51_RS09375 -2.3 -11.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABIE51_RS16095 -2.3 -2.6 shikimate kinase compare
ABIE51_RS05295 -2.2 -5.8 response regulator transcription factor compare
ABIE51_RS05180 -2.1 -7.3 glycosyltransferase compare
ABIE51_RS02450 -2.1 -5.9 MarR family transcriptional regulator compare
ABIE51_RS07005 -2.1 -7.4 asparagine synthase B compare
ABIE51_RS06550 -2.0 -11.4 FtsH protease activity modulator HflK compare
ABIE51_RS03185 -2.0 -9.3 carboxy terminal-processing peptidase compare
ABIE51_RS06180 -2.0 -6.3 amidophosphoribosyltransferase compare
ABIE51_RS04620 -2.0 -13.5 serine hydroxymethyltransferase compare
ABIE51_RS04505 -2.0 -7.9 phosphoribosylformylglycinamidine synthase compare
ABIE51_RS13300 -2.0 -6.6 imidazole glycerol phosphate synthase subunit HisF compare
ABIE51_RS09370 -1.9 -13.9 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABIE51_RS01280 -1.9 -5.0 lipid-binding SYLF domain-containing protein compare
ABIE51_RS03160 -1.9 -13.7 septal ring lytic transglycosylase RlpA family protein compare
ABIE51_RS08885 -1.9 -2.4 cell division protein ZipA compare
ABIE51_RS05540 -1.9 -1.8 hypothetical protein compare
ABIE51_RS04125 -1.8 -6.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE51_RS00635 -1.8 -5.6 hybrid sensor histidine kinase/response regulator compare
ABIE51_RS06555 -1.8 -7.2 protease modulator HflC compare
ABIE51_RS09425 -1.8 -2.1 helix-turn-helix domain-containing protein compare
ABIE51_RS05975 -1.8 -7.3 class II 3-deoxy-7-phosphoheptulonate synthase compare
ABIE51_RS06000 -1.8 -10.0 pyridoxal phosphate-dependent aminotransferase compare
ABIE51_RS13305 -1.8 -2.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE51_RS09520 -1.8 -12.1 phosphoenolpyruvate synthase compare
ABIE51_RS03940 -1.8 -7.9 response regulator transcription factor compare
ABIE51_RS04245 -1.7 -4.5 fumarylacetoacetate hydrolase family protein compare
ABIE51_RS17770 -1.7 -3.5 phosphoribosylamine--glycine ligase compare
ABIE51_RS17715 -1.7 -6.2 type II 3-dehydroquinate dehydratase compare
ABIE51_RS06500 -1.7 -4.9 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS16970 -1.7 -1.6 sensor histidine kinase compare
ABIE51_RS15850 -1.7 -10.2 LysR family transcriptional regulator compare
ABIE51_RS05175 -1.6 -6.5 hypothetical protein compare
ABIE51_RS12145 -1.6 -9.1 prephenate dehydratase compare
ABIE51_RS13315 -1.6 -2.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABIE51_RS13320 -1.6 -6.5 histidinol-phosphate transaminase compare
ABIE51_RS01675 -1.6 -11.5 PAS domain-containing hybrid sensor histidine kinase/response regulator compare
ABIE51_RS13410 -1.6 -11.3 N-acetylornithine carbamoyltransferase compare
ABIE51_RS14085 -1.6 -2.5 DUF6165 family protein compare
ABIE51_RS15890 -1.6 -4.5 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE51_RS05300 -1.5 -5.2 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS17560 -1.5 -8.8 aminotransferase class IV compare
ABIE51_RS15530 -1.5 -4.4 YbdD/YjiX family protein compare
ABIE51_RS15525 -1.5 -8.0 carbon starvation CstA family protein compare
ABIE51_RS08250 -1.5 -3.0 phosphoribosylanthranilate isomerase compare
ABIE51_RS09090 -1.5 -6.2 homocysteine S-methyltransferase family protein compare
ABIE51_RS14090 -1.5 -6.3 PP2C family serine/threonine-protein phosphatase compare
ABIE51_RS04150 -1.5 -10.8 anthranilate synthase component I compare
ABIE51_RS00065 -1.5 -3.3 orotate phosphoribosyltransferase compare
ABIE51_RS15855 -1.4 -5.3 siroheme synthase CysG compare
ABIE51_RS02265 -1.4 -2.6 glycosyltransferase family 2 protein compare
ABIE51_RS04190 -1.4 -3.0 indole-3-glycerol phosphate synthase TrpC compare
ABIE51_RS01840 -1.4 -6.6 sulfate/molybdate ABC transporter ATP-binding protein compare
ABIE51_RS13405 -1.4 -8.1 argininosuccinate synthase compare
ABIE51_RS17035 -1.4 -11.9 class I fructose-bisphosphate aldolase compare
ABIE51_RS16510 -1.4 -8.2 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS00785 -1.4 -5.9 energy transducer TonB compare
ABIE51_RS03265 -1.4 -7.3 trypsin-like peptidase domain-containing protein compare
ABIE51_RS13330 -1.4 -2.7 ATP phosphoribosyltransferase compare
ABIE51_RS06905 -1.4 -6.8 RIP metalloprotease RseP compare
ABIE51_RS17060 -1.4 -6.9 phosphoglycerate kinase compare
ABIE51_RS09045 -1.4 -4.7 GntR family transcriptional regulator compare
ABIE51_RS17550 -1.4 -3.5 acetolactate synthase 2 catalytic subunit compare
ABIE51_RS13890 -1.4 -11.8 RNA polymerase sigma factor RpoE compare
ABIE51_RS04180 -1.4 -4.0 anthranilate phosphoribosyltransferase compare
ABIE51_RS13385 -1.3 -5.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE51_RS01320 -1.3 -11.3 glutamate synthase large subunit compare
ABIE51_RS04825 -1.3 -6.1 pilin compare
ABIE51_RS17495 -1.3 -12.4 TonB-dependent receptor compare
ABIE51_RS17270 -1.3 -2.6 DNA-directed RNA polymerase subunit omega compare
ABIE51_RS08260 -1.3 -8.1 tryptophan synthase subunit beta compare
ABIE51_RS11490 -1.3 -11.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE51_RS17565 -1.3 -6.4 threonine dehydratase compare
ABIE51_RS17545 -1.3 -9.8 ketol-acid reductoisomerase compare
ABIE51_RS00250 -1.3 -5.0 olefin beta-lactone synthetase compare
ABIE51_RS17760 -1.3 -6.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE51_RS11455 -1.3 -2.5 DNA translocase FtsK compare
ABIE51_RS13540 -1.3 -7.0 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
ABIE51_RS02085 -1.3 -4.6 cell division ATP-binding protein FtsE compare
ABIE51_RS13395 -1.3 -5.9 acetylglutamate kinase compare
ABIE51_RS17355 -1.3 -4.4 5-formyltetrahydrofolate cyclo-ligase compare
ABIE51_RS01845 -1.3 -3.7 sulfate ABC transporter permease subunit CysW compare
ABIE51_RS11615 -1.3 -8.2 carbamoyl-phosphate synthase large subunit compare
ABIE51_RS01855 -1.3 -6.6 sulfate ABC transporter substrate-binding protein compare
ABIE51_RS14150 -1.3 -6.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE51_RS01315 -1.3 -6.8 FAD-dependent oxidoreductase compare
ABIE51_RS17095 -1.3 -8.7 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABIE51_RS17580 -1.3 -3.7 3-isopropylmalate dehydratase small subunit compare
ABIE51_RS00990 -1.3 -9.7 VacJ family lipoprotein compare
ABIE51_RS18995 -1.3 -6.4 alpha-glucosidase family protein compare
ABIE51_RS17575 -1.3 -3.7 3-isopropylmalate dehydratase large subunit compare
ABIE51_RS13325 -1.2 -7.3 histidinol dehydrogenase compare
ABIE51_RS00925 -1.2 -11.0 phenylalanine 4-monooxygenase compare
ABIE51_RS16190 -1.2 -7.2 homoserine O-succinyltransferase compare
ABIE51_RS03945 -1.2 -8.8 ATP-binding protein compare
ABIE51_RS08265 -1.2 -7.1 tryptophan synthase subunit alpha compare
ABIE51_RS07575 -1.2 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerase N-terminal domain-containing protein compare
ABIE51_RS10470 -1.2 -8.8 SMP-30/gluconolactonase/LRE family protein compare
ABIE51_RS17585 -1.2 -7.4 3-isopropylmalate dehydrogenase compare
ABIE51_RS15830 -1.2 -5.7 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABIE51_RS19265 -1.2 -8.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABIE51_RS00035 -1.2 -10.9 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS19030 -1.2 -6.2 endonuclease/exonuclease/phosphatase family protein compare
ABIE51_RS05275 -1.2 -6.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABIE51_RS06730 -1.2 -3.0 LPS assembly lipoprotein LptE compare
ABIE51_RS03165 -1.2 -11.1 D-alanyl-D-alanine carboxypeptidase family protein compare
ABIE51_RS15825 -1.2 -7.0 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABIE51_RS15390 -1.2 -1.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE51_RS16490 -1.2 -8.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE51_RS17440 -1.2 -9.8 bifunctional DedA family/phosphatase PAP2 family protein compare
ABIE51_RS14530 -1.2 -6.1 hypothetical protein compare
ABIE51_RS01850 -1.2 -6.1 sulfate ABC transporter permease subunit CysT compare
ABIE51_RS16015 -1.2 -2.2 aspartate carbamoyltransferase catalytic subunit compare
ABIE51_RS14345 -1.2 -4.7 aminomethyl-transferring glycine dehydrogenase compare
ABIE51_RS17520 -1.1 -5.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABIE51_RS01000 -1.1 -8.1 ABC transporter substrate-binding protein compare
ABIE51_RS12150 -1.1 -8.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABIE51_RS13885 -1.1 -2.4 sigma-E factor negative regulatory protein compare
ABIE51_RS17535 -1.1 -5.6 hypothetical protein compare
ABIE51_RS17540 -1.1 -5.4 dihydroxy-acid dehydratase compare
ABIE51_RS02175 -1.1 -8.9 signal peptide peptidase SppA compare
ABIE51_RS17200 -1.1 -7.2 citrate synthase compare
ABIE51_RS15820 -1.1 -6.7 sulfate adenylyltransferase subunit CysD compare
ABIE51_RS16815 -1.1 -6.3 flagellar motor switch protein FliM compare
ABIE51_RS16065 -1.1 -4.2 pyrroline-5-carboxylate reductase compare
ABIE51_RS09085 -1.1 -6.4 methionine synthase compare
ABIE51_RS17740 -1.1 -6.4 hypothetical protein compare
ABIE51_RS03270 -1.1 -10.4 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase compare
ABIE51_RS02090 -1.1 -6.2 permease-like cell division protein FtsX compare
ABIE51_RS16525 -1.1 -3.2 RimK/LysX family protein compare
ABIE51_RS04335 -1.1 -7.6 hypothetical protein compare
ABIE51_RS08785 -1.1 -7.1 ScpA family protein compare
ABIE51_RS19260 -1.1 -8.5 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS08880 -1.1 -7.0 chromosome segregation protein SMC compare
ABIE51_RS03155 -1.1 -8.7 lytic murein transglycosylase B compare
ABIE51_RS16785 -1.0 -4.1 flagellar motor switch protein FliG compare
ABIE51_RS18965 -1.0 -7.0 phosphoenolpyruvate carboxylase compare
ABIE51_RS18515 -1.0 -3.1 tRNA-Leu compare
ABIE51_RS17555 -1.0 -1.4 ACT domain-containing protein compare
ABIE51_RS17530 -1.0 -6.9 threonine synthase compare
ABIE51_RS08810 -1.0 -9.2 glucoamylase family protein compare
ABIE51_RS15835 -1.0 -5.4 phosphoadenylyl-sulfate reductase compare
ABIE51_RS17405 -1.0 -5.7 rubredoxin compare
ABIE51_RS06785 -1.0 -7.7 ribonuclease G compare
ABIE51_RS08535 -1.0 -5.5 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABIE51_RS00325 -1.0 -5.9 fatty acid desaturase compare
ABIE51_RS04210 -1.0 -7.9 cAMP-activated global transcriptional regulator CRP compare
ABIE51_RS04570 -1.0 -1.6 general secretion pathway protein GspN compare
ABIE51_RS04535 -1.0 -4.6 type II secretion system major pseudopilin GspG compare
ABIE51_RS17570 -1.0 -2.4 2-isopropylmalate synthase compare
ABIE51_RS00540 -1.0 -6.8 NADP-dependent isocitrate dehydrogenase compare
ABIE51_RS14060 -1.0 -3.6 MBL fold metallo-hydrolase compare
ABIE51_RS15235 -1.0 -2.7 MerR family transcriptional regulator compare
ABIE51_RS02220 -0.9 -4.6 DNA topoisomerase I compare
ABIE51_RS03135 -0.9 -3.0 rod shape-determining protein MreC compare
ABIE51_RS13245 -0.9 -2.3 phosphoglycerate dehydrogenase compare
ABIE51_RS15905 -0.9 -6.0 DUF3108 domain-containing protein compare
ABIE51_RS14155 -0.9 -4.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABIE51_RS00270 -0.9 -3.1 DUF4156 domain-containing protein compare
ABIE51_RS13380 -0.9 -2.8 argininosuccinate lyase compare
ABIE51_RS13240 -0.9 -4.6 FAD-binding oxidoreductase compare
ABIE51_RS16420 -0.9 -3.2 TMEM165/GDT1 family protein compare
ABIE51_RS15970 -0.9 -2.7 HPr(Ser) kinase/phosphatase compare
ABIE51_RS16185 -0.9 -3.8 O-succinylhomoserine (thiol)-lyase compare
ABIE51_RS17320 -0.9 -7.2 aminopeptidase P N-terminal domain-containing protein compare
ABIE51_RS05415 -0.9 -3.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE51_RS04575 -0.9 -7.0 type II secretion system secretin GspD compare
ABIE51_RS04990 -0.9 -2.8 YceH family protein compare
ABIE51_RS04550 -0.9 -2.9 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABIE51_RS04070 -0.9 -6.2 MarR family winged helix-turn-helix transcriptional regulator compare
ABIE51_RS17400 -0.9 -7.2 DUF192 domain-containing protein compare
ABIE51_RS01010 -0.9 -6.9 MlaE family lipid ABC transporter permease subunit compare
ABIE51_RS05420 -0.9 -3.6 DUF6580 family putative transport protein compare
ABIE51_RS09360 -0.9 -6.6 lipopolysaccharide assembly protein LapB compare
ABIE51_RS13420 -0.9 -5.9 hypothetical protein compare
ABIE51_RS05660 -0.9 -1.6 helix-turn-helix domain-containing protein compare
ABIE51_RS06495 -0.9 -4.8 YqaA family protein compare
ABIE51_RS17345 -0.9 -3.8 cell division protein ZapA compare
ABIE51_RS17525 -0.9 -4.1 homoserine kinase compare
ABIE51_RS01565 -0.8 -1.9 hypothetical protein compare
ABIE51_RS11495 -0.8 -4.6 ATP-dependent Clp protease adapter ClpS compare
ABIE51_RS01815 -0.8 -2.0 shikimate dehydrogenase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Ying_OrganicAcid7 in Lysobacter sp. OAE881

For carbon source Ying_OrganicAcid7 across organisms