Experiment set3S464 for Lysobacter sp. OAE881

Compare to:

Ying_AminoAcid20 rep B; time point 1

200 most detrimental genes:

  gene name fitness t score description  
ABIE51_RS04350 +2.2 19.8 glycosyltransferase family 2 protein compare
ABIE51_RS08040 +2.0 17.5 glucose-6-phosphate isomerase compare
ABIE51_RS13800 +1.8 11.2 cold-shock protein compare
ABIE51_RS13245 +1.7 8.5 phosphoglycerate dehydrogenase compare
ABIE51_RS08260 +1.6 12.8 tryptophan synthase subunit beta compare
ABIE51_RS04355 +1.6 13.6 NAD(P)-dependent oxidoreductase compare
ABIE51_RS08775 +1.6 8.6 pseudouridine synthase compare
ABIE51_RS00800 +1.5 4.5 biopolymer transporter ExbD compare
ABIE51_RS04190 +1.5 6.9 indole-3-glycerol phosphate synthase TrpC compare
ABIE51_RS06960 +1.5 13.8 TonB-dependent receptor compare
ABIE51_RS07990 +1.5 10.0 glycine cleavage system protein R compare
ABIE51_RS08250 +1.5 8.4 phosphoribosylanthranilate isomerase compare
ABIE51_RS13255 +1.4 4.8 hypothetical protein compare
ABIE51_RS13550 +1.3 5.4 tRNA-Ala compare
ABIE51_RS19235 +1.3 12.3 outer membrane protein transport protein compare
ABIE51_RS06950 +1.3 9.1 RNA polymerase sigma factor compare
ABIE51_RS11520 +1.3 9.5 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
ABIE51_RS00105 +1.2 5.1 SPOR domain-containing protein compare
ABIE51_RS09225 +1.2 5.0 30S ribosomal protein S18 compare
ABIE51_RS07200 +1.1 6.5 hypothetical protein compare
ABIE51_RS13880 +1.1 9.9 DegQ family serine endoprotease compare
ABIE51_RS17285 +1.1 8.3 ribonuclease PH compare
ABIE51_RS15235 +1.1 5.0 MerR family transcriptional regulator compare
ABIE51_RS04920 +1.1 3.4 trehalose-phosphatase compare
ABIE51_RS15720 +1.1 8.6 SET domain-containing protein-lysine N-methyltransferase compare
ABIE51_RS18820 +1.1 3.9 NADP-dependent malic enzyme compare
ABIE51_RS04180 +1.0 5.7 anthranilate phosphoribosyltransferase compare
ABIE51_RS02050 +1.0 7.5 YcgL domain-containing protein compare
ABIE51_RS16000 +1.0 8.2 phosphoenolpyruvate--protein phosphotransferase compare
ABIE51_RS16750 +0.9 3.1 response regulator transcription factor compare
ABIE51_RS07475 +0.9 7.5 ribonuclease R compare
ABIE51_RS15420 +0.9 5.9 ClpXP protease specificity-enhancing factor compare
ABIE51_RS18120 +0.9 6.1 hypothetical protein compare
ABIE51_RS15425 +0.9 4.6 glutathione S-transferase N-terminal domain-containing protein compare
ABIE51_RS14105 +0.9 4.3 hydroxyacylglutathione hydrolase compare
ABIE51_RS01710 +0.8 7.1 lipid-A-disaccharide synthase N-terminal domain-containing protein compare
ABIE51_RS08255 +0.8 6.0 LysR family transcriptional regulator compare
ABIE51_RS08865 +0.8 5.2 glucokinase compare
ABIE51_RS04150 +0.8 7.2 anthranilate synthase component I compare
ABIE51_RS12600 +0.8 1.7 cold-shock protein compare
ABIE51_RS00995 +0.8 3.8 STAS domain-containing protein compare
ABIE51_RS12110 +0.8 2.5 LysR family transcriptional regulator compare
ABIE51_RS04885 +0.8 4.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
ABIE51_RS08265 +0.8 5.7 tryptophan synthase subunit alpha compare
ABIE51_RS00780 +0.8 7.3 tetratricopeptide repeat protein compare
ABIE51_RS02055 +0.8 5.3 ankyrin repeat domain-containing protein compare
ABIE51_RS08405 +0.8 7.0 tRNA pseudouridine(55) synthase TruB compare
ABIE51_RS06170 +0.7 2.3 SPOR domain-containing protein compare
ABIE51_RS11680 +0.7 3.2 SsrA-binding protein SmpB compare
ABIE51_RS11635 +0.7 4.5 molecular chaperone DnaJ compare
ABIE51_RS16970 +0.7 1.3 sensor histidine kinase compare
ABIE51_RS01740 +0.7 5.8 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
ABIE51_RS09075 +0.7 4.8 DUF2058 family protein compare
ABIE51_RS04345 +0.7 5.9 glycosyltransferase family A protein compare
ABIE51_RS13250 +0.7 5.0 NUDIX hydrolase compare
ABIE51_RS11800 +0.7 5.7 RluA family pseudouridine synthase compare
ABIE51_RS16595 +0.7 4.8 EAL domain-containing protein compare
ABIE51_RS05275 +0.7 3.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABIE51_RS01440 +0.7 1.8 P-II family nitrogen regulator compare
ABIE51_RS14660 +0.7 1.9 alpha/beta fold hydrolase compare
ABIE51_RS13845 +0.7 4.3 response regulator compare
ABIE51_RS17520 +0.7 4.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABIE51_RS13295 +0.7 2.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABIE51_RS09120 +0.6 3.2 DUF2939 domain-containing protein compare
ABIE51_RS14590 +0.6 3.9 response regulator transcription factor compare
ABIE51_RS17430 +0.6 3.6 NAD(P)-dependent oxidoreductase compare
ABIE51_RS15020 +0.6 3.9 tRNA guanosine(34) transglycosylase Tgt compare
ABIE51_RS19240 +0.6 3.4 rhomboid family intramembrane serine protease compare
ABIE51_RS07610 +0.6 5.8 excinuclease ABC subunit UvrA compare
ABIE51_RS06600 +0.6 4.8 rhomboid family intramembrane serine protease compare
ABIE51_RS07465 +0.6 2.7 hypothetical protein compare
ABIE51_RS06095 +0.6 2.4 class III extradiol ring-cleavage dioxygenase compare
ABIE51_RS16115 +0.6 4.1 hybrid sensor histidine kinase/response regulator compare
ABIE51_RS17435 +0.6 5.2 serine/threonine protein kinase compare
ABIE51_RS09115 +0.6 4.9 5'-nucleotidase compare
ABIE51_RS09930 +0.6 1.1 iron uptake protein compare
ABIE51_RS16090 +0.6 2.0 kinase compare
ABIE51_RS05005 +0.6 1.0 PhzF family phenazine biosynthesis isomerase compare
ABIE51_RS01005 +0.6 5.5 outer membrane lipid asymmetry maintenance protein MlaD compare
ABIE51_RS05615 +0.6 2.0 proprotein convertase P-domain-containing protein compare
ABIE51_RS11810 +0.6 4.1 response regulator compare
ABIE51_RS04290 +0.6 5.3 UDP-glucose 4-epimerase GalE compare
ABIE51_RS02775 +0.6 1.3 VOC family protein compare
ABIE51_RS06715 +0.6 1.5 DUF998 domain-containing protein compare
ABIE51_RS15205 +0.6 2.0 hypothetical protein compare
ABIE51_RS12360 +0.5 3.8 hypothetical protein compare
ABIE51_RS02260 +0.5 4.7 glycosyltransferase family 39 protein compare
ABIE51_RS01685 +0.5 3.7 helix-turn-helix transcriptional regulator compare
ABIE51_RS01010 +0.5 4.2 MlaE family lipid ABC transporter permease subunit compare
ABIE51_RS05590 +0.5 1.6 hypothetical protein compare
ABIE51_RS17280 +0.5 2.2 YicC/YloC family endoribonuclease compare
ABIE51_RS06765 +0.5 1.0 energy transducer TonB compare
ABIE51_RS17425 +0.5 4.3 ion transporter compare
ABIE51_RS14230 +0.5 4.3 polyphosphate kinase 1 compare
ABIE51_RS05225 +0.5 1.4 chemotaxis protein CheW compare
ABIE51_RS12300 +0.5 4.1 TetR/AcrR family transcriptional regulator compare
ABIE51_RS11005 +0.5 1.5 AraC family transcriptional regulator compare
ABIE51_RS14165 +0.5 2.0 tRNA-Leu compare
ABIE51_RS14225 +0.5 3.6 phosphate regulon sensor histidine kinase PhoR compare
ABIE51_RS10195 +0.5 1.1 anti-sigma regulatory factor compare
ABIE51_RS00670 +0.5 1.7 hypothetical protein compare
ABIE51_RS16645 +0.5 4.0 ATP-binding protein compare
ABIE51_RS01695 +0.5 1.8 50S ribosomal protein L33 compare
ABIE51_RS18715 +0.5 0.9 DUF2784 domain-containing protein compare
ABIE51_RS04175 +0.5 2.2 aminodeoxychorismate/anthranilate synthase component II compare
ABIE51_RS17040 +0.5 2.9 pyruvate kinase compare
ABIE51_RS15415 +0.5 1.9 DUF3301 domain-containing protein compare
ABIE51_RS15575 +0.5 2.5 DUF4123 domain-containing protein compare
ABIE51_RS04580 +0.5 2.9 glycosyltransferase compare
ABIE51_RS17525 +0.5 3.2 homoserine kinase compare
ABIE51_RS15805 +0.5 3.8 M20 family metallopeptidase compare
ABIE51_RS15160 +0.5 3.4 hypothetical protein compare
ABIE51_RS17690 +0.5 4.0 helix-turn-helix transcriptional regulator compare
ABIE51_RS18055 +0.5 3.6 TldD/PmbA family protein compare
ABIE51_RS18975 +0.5 3.8 LacI family DNA-binding transcriptional regulator compare
ABIE51_RS07795 +0.5 2.4 transcriptional repressor LexA compare
ABIE51_RS13275 +0.5 2.0 acireductone dioxygenase compare
ABIE51_RS18115 +0.5 3.3 hypothetical protein compare
ABIE51_RS02530 +0.5 2.0 FAD-dependent oxidoreductase compare
ABIE51_RS16705 +0.5 2.4 flagellar basal body P-ring protein FlgI compare
ABIE51_RS17990 +0.4 2.7 dethiobiotin synthase compare
ABIE51_RS15530 +0.4 2.2 YbdD/YjiX family protein compare
ABIE51_RS03600 +0.4 3.1 M23 family metallopeptidase compare
ABIE51_RS16765 +0.4 2.3 response regulator transcription factor compare
ABIE51_RS11185 +0.4 1.3 hypothetical protein compare
ABIE51_RS01015 +0.4 3.4 ABC transporter ATP-binding protein compare
ABIE51_RS05575 +0.4 0.7 helix-turn-helix transcriptional regulator compare
ABIE51_RS06335 +0.4 3.4 DUF885 domain-containing protein compare
ABIE51_RS01035 +0.4 1.5 phytochelatin synthase family protein compare
ABIE51_RS00135 +0.4 3.2 phosphotransferase compare
ABIE51_RS13230 +0.4 2.6 DUF4105 domain-containing protein compare
ABIE51_RS09710 +0.4 1.9 HlyD family secretion protein compare
ABIE51_RS06110 +0.4 3.5 OmpA family protein compare
ABIE51_RS12595 +0.4 3.8 glycine zipper 2TM domain-containing protein compare
ABIE51_RS17995 +0.4 2.8 GAF domain-containing protein compare
ABIE51_RS05130 +0.4 2.5 hypothetical protein compare
ABIE51_RS18125 +0.4 2.7 hypothetical protein compare
ABIE51_RS06100 +0.4 4.0 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABIE51_RS10950 +0.4 2.9 sodium/sugar symporter compare
ABIE51_RS06930 +0.4 2.3 cation diffusion facilitator family transporter compare
ABIE51_RS09800 +0.4 1.0 VOC family protein compare
ABIE51_RS15165 +0.4 2.8 LEA type 2 family protein compare
ABIE51_RS10690 +0.4 1.5 NAD(P)-binding oxidoreductase compare
ABIE51_RS11395 +0.4 1.2 DksA/TraR family C4-type zinc finger protein compare
ABIE51_RS03275 +0.4 1.1 hypothetical protein compare
ABIE51_RS07840 +0.4 2.4 4'-phosphopantetheinyl transferase superfamily protein compare
ABIE51_RS08000 +0.4 2.9 hypothetical protein compare
ABIE51_RS07790 +0.4 2.9 CinA family protein compare
ABIE51_RS17835 +0.4 3.5 bacterioferritin compare
ABIE51_RS13495 +0.4 2.4 TRZ/ATZ family hydrolase compare
ABIE51_RS13225 +0.4 2.0 GNAT family N-acetyltransferase compare
ABIE51_RS00180 +0.4 3.6 putative peptide modification system cyclase compare
ABIE51_RS15370 +0.4 1.6 YhgN family NAAT transporter compare
ABIE51_RS12125 +0.4 0.6 TonB family protein compare
ABIE51_RS15280 +0.4 2.1 hypothetical protein compare
ABIE51_RS14600 +0.4 2.8 GNAT family N-acetyltransferase compare
ABIE51_RS11040 +0.4 1.9 hypothetical protein compare
ABIE51_RS16770 +0.4 2.9 sigma-54 dependent transcriptional regulator compare
ABIE51_RS10530 +0.4 2.2 dihydrodipicolinate synthase family protein compare
ABIE51_RS06115 +0.4 3.4 OmpA family protein compare
ABIE51_RS12830 +0.4 2.5 polysaccharide biosynthesis C-terminal domain-containing protein compare
ABIE51_RS12590 +0.4 1.2 cytochrome c compare
ABIE51_RS13700 +0.4 2.4 MurR/RpiR family transcriptional regulator compare
ABIE51_RS05510 +0.4 2.3 NUDIX hydrolase compare
ABIE51_RS10285 +0.4 0.9 SDR family oxidoreductase compare
ABIE51_RS18000 +0.4 2.7 TfoX/Sxy family protein compare
ABIE51_RS02170 +0.4 2.5 MATE family efflux transporter compare
ABIE51_RS13415 +0.4 2.5 hypothetical protein compare
ABIE51_RS14500 +0.4 1.9 hypothetical protein compare
ABIE51_RS06090 +0.4 3.0 LysR family transcriptional regulator compare
ABIE51_RS10820 +0.4 1.7 PAS domain-containing sensor histidine kinase compare
ABIE51_RS01635 +0.4 2.0 N-acetylglucosamine-6-phosphate deacetylase compare
ABIE51_RS12150 +0.4 3.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABIE51_RS14730 +0.4 1.8 YihY/virulence factor BrkB family protein compare
ABIE51_RS12585 +0.4 2.6 tRNA threonylcarbamoyladenosine dehydratase compare
ABIE51_RS08520 +0.4 0.8 response regulator transcription factor compare
ABIE51_RS08215 +0.4 3.0 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
ABIE51_RS03575 +0.4 2.3 hypothetical protein compare
ABIE51_RS13895 +0.4 3.1 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein compare
ABIE51_RS13285 +0.4 0.7 YdeI/OmpD-associated family protein compare
ABIE51_RS06485 +0.4 2.2 5'/3'-nucleotidase SurE compare
ABIE51_RS12620 +0.4 1.3 fumarate hydratase compare
ABIE51_RS18985 +0.4 2.8 MFS transporter compare
ABIE51_RS17090 +0.4 2.1 group III truncated hemoglobin compare
ABIE51_RS17840 +0.4 1.2 (2Fe-2S)-binding protein compare
ABIE51_RS02380 +0.4 0.8 hypothetical protein compare
ABIE51_RS16915 +0.4 2.4 chemotaxis protein CheW compare
ABIE51_RS07480 +0.4 2.3 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
ABIE51_RS01715 +0.4 2.5 glycosyltransferase family 2 protein compare
ABIE51_RS11170 +0.4 1.9 methyl-accepting chemotaxis protein compare
ABIE51_RS16185 +0.4 2.1 O-succinylhomoserine (thiol)-lyase compare
ABIE51_RS03595 +0.4 2.5 cupin domain-containing protein compare
ABIE51_RS05550 +0.4 0.6 hypothetical protein compare
ABIE51_RS04975 +0.4 1.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE51_RS17715 +0.3 1.6 type II 3-dehydroquinate dehydratase compare
ABIE51_RS01720 +0.3 2.6 NAD-dependent epimerase/dehydratase family protein compare
ABIE51_RS16695 +0.3 1.8 flagellar basal-body rod protein FlgG compare
ABIE51_RS00685 +0.3 1.7 winged helix-turn-helix domain-containing protein compare
ABIE51_RS04840 +0.3 2.6 glycosyltransferase family 2 protein compare
ABIE51_RS04000 +0.3 1.5 CsbD family protein compare


Specific Phenotypes

None in this experiment

For Lysobacter sp. OAE881 in carbon source experiments

For carbon source Ying_AminoAcid20 across organisms