Experiment set3S463 for Lysobacter sp. OAE881

Compare to:

Ying_AminoAcid20 rep A; time point 1

200 most important genes:

  gene name fitness t score description  
ABIE51_RS13890 -7.2 -22.7 RNA polymerase sigma factor RpoE compare
ABIE51_RS03265 -6.9 -6.7 trypsin-like peptidase domain-containing protein compare
ABIE51_RS17035 -6.0 -22.3 class I fructose-bisphosphate aldolase compare
ABIE51_RS01280 -5.7 -5.6 lipid-binding SYLF domain-containing protein compare
ABIE51_RS13260 -5.7 -11.6 amino acid permease compare
ABIE51_RS03165 -5.7 -31.8 D-alanyl-D-alanine carboxypeptidase family protein compare
ABIE51_RS11490 -5.6 -30.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE51_RS06340 -5.6 -11.4 hypothetical protein compare
ABIE51_RS05300 -5.6 -8.5 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS19265 -5.3 -12.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABIE51_RS05540 -5.2 -3.5 hypothetical protein compare
ABIE51_RS09450 -5.2 -7.9 gephyrin-like molybdotransferase Glp compare
ABIE51_RS03935 -5.2 -7.1 hypothetical protein compare
ABIE51_RS16555 -5.1 -17.0 SLC13 family permease compare
ABIE51_RS00035 -5.1 -26.6 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS14045 -5.1 -6.1 MoaD/ThiS family protein compare
ABIE51_RS10470 -5.1 -10.6 SMP-30/gluconolactonase/LRE family protein compare
ABIE51_RS17515 -5.1 -19.2 phosphomethylpyrimidine synthase ThiC compare
ABIE51_RS09445 -5.1 -9.1 NTP transferase domain-containing protein compare
ABIE51_RS15620 -5.0 -6.8 dTDP-glucose 4,6-dehydratase compare
ABIE51_RS02300 -5.0 -7.5 lauroyl acyltransferase compare
ABIE51_RS04310 -4.9 -6.7 glycosyltransferase compare
ABIE51_RS16260 -4.9 -3.4 hypothetical protein compare
ABIE51_RS15890 -4.9 -4.8 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE51_RS04505 -4.9 -6.7 phosphoribosylformylglycinamidine synthase compare
ABIE51_RS03940 -4.9 -4.7 response regulator transcription factor compare
ABIE51_RS14055 -4.8 -4.7 GTP 3',8-cyclase MoaA compare
ABIE51_RS17770 -4.7 -3.2 phosphoribosylamine--glycine ligase compare
ABIE51_RS02220 -4.7 -6.8 DNA topoisomerase I compare
ABIE51_RS00065 -4.7 -3.2 orotate phosphoribosyltransferase compare
ABIE51_RS14040 -4.6 -7.0 molybdenum cofactor biosynthesis protein MoaE compare
ABIE51_RS17095 -4.6 -14.7 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABIE51_RS17760 -4.6 -6.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE51_RS17060 -4.5 -10.5 phosphoglycerate kinase compare
ABIE51_RS02975 -4.5 -8.6 DmsC/YnfH family molybdoenzyme membrane anchor subunit compare
ABIE51_RS15615 -4.5 -11.8 glucose-1-phosphate thymidylyltransferase RfbA compare
ABIE51_RS18545 -4.4 -2.9 DUF6249 domain-containing protein compare
ABIE51_RS14050 -4.4 -4.3 cyclic pyranopterin monophosphate synthase MoaC compare
ABIE51_RS17630 -4.4 -6.7 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase compare
ABIE51_RS06180 -4.4 -4.3 amidophosphoribosyltransferase compare
ABIE51_RS19030 -4.4 -8.4 endonuclease/exonuclease/phosphatase family protein compare
ABIE51_RS02990 -4.4 -16.3 molybdopterin oxidoreductase family protein compare
ABIE51_RS11615 -4.3 -13.3 carbamoyl-phosphate synthase large subunit compare
ABIE51_RS02980 -4.3 -7.7 4Fe-4S dicluster domain-containing protein compare
ABIE51_RS06000 -4.3 -10.3 pyridoxal phosphate-dependent aminotransferase compare
ABIE51_RS03160 -4.2 -19.8 septal ring lytic transglycosylase RlpA family protein compare
ABIE51_RS14555 -4.1 -2.8 M15 family metallopeptidase compare
ABIE51_RS19165 -4.1 -10.9 heme o synthase compare
ABIE51_RS15390 -4.1 -2.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE51_RS03945 -4.0 -20.7 ATP-binding protein compare
ABIE51_RS11460 -4.0 -17.6 alanine dehydrogenase compare
ABIE51_RS16510 -4.0 -12.4 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS09045 -4.0 -6.6 GntR family transcriptional regulator compare
ABIE51_RS00250 -3.9 -7.1 olefin beta-lactone synthetase compare
ABIE51_RS16395 -3.9 -2.7 PDZ domain-containing protein compare
ABIE51_RS04250 -3.8 -12.0 maleylacetoacetate isomerase compare
ABIE51_RS13480 -3.8 -3.7 phytoene/squalene synthase family protein compare
ABIE51_RS04245 -3.8 -3.7 fumarylacetoacetate hydrolase family protein compare
ABIE51_RS04125 -3.7 -7.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE51_RS03185 -3.6 -8.8 carboxy terminal-processing peptidase compare
ABIE51_RS09105 -3.6 -5.5 NAD-glutamate dehydrogenase domain-containing protein compare
ABIE51_RS13145 -3.6 -14.0 acetyl-CoA C-acyltransferase compare
ABIE51_RS19215 -3.6 -21.7 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA compare
ABIE51_RS00325 -3.6 -10.7 fatty acid desaturase compare
ABIE51_RS14155 -3.6 -7.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABIE51_RS14070 -3.5 -6.5 glycosyltransferase family 9 protein compare
ABIE51_RS04085 -3.4 -14.0 homogentisate 1,2-dioxygenase compare
ABIE51_RS09125 -3.3 -22.9 amino acid permease compare
ABIE51_RS16015 -3.3 -3.1 aspartate carbamoyltransferase catalytic subunit compare
ABIE51_RS06500 -3.2 -5.3 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS14530 -3.2 -12.1 hypothetical protein compare
ABIE51_RS14085 -3.2 -3.0 DUF6165 family protein compare
ABIE51_RS09365 -3.2 -4.3 glycosyltransferase family 4 protein compare
ABIE51_RS13115 -3.1 -14.5 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein compare
ABIE51_RS11495 -3.1 -8.6 ATP-dependent Clp protease adapter ClpS compare
ABIE51_RS16420 -3.1 -8.3 TMEM165/GDT1 family protein compare
ABIE51_RS17405 -3.1 -12.1 rubredoxin compare
ABIE51_RS08880 -3.1 -14.8 chromosome segregation protein SMC compare
ABIE51_RS17440 -3.1 -21.3 bifunctional DedA family/phosphatase PAP2 family protein compare
ABIE51_RS17190 -3.1 -2.1 penicillin-binding protein 1A compare
ABIE51_RS04075 -3.0 -16.3 4-hydroxyphenylpyruvate dioxygenase compare
ABIE51_RS19025 -3.0 -10.0 thiol:disulfide interchange protein DsbA/DsbL compare
ABIE51_RS06550 -3.0 -12.6 FtsH protease activity modulator HflK compare
ABIE51_RS17270 -3.0 -3.8 DNA-directed RNA polymerase subunit omega compare
ABIE51_RS02280 -3.0 -8.1 CDP-glycerol glycerophosphotransferase family protein compare
ABIE51_RS05180 -3.0 -8.1 glycosyltransferase compare
ABIE51_RS14090 -3.0 -9.1 PP2C family serine/threonine-protein phosphatase compare
ABIE51_RS08785 -3.0 -15.0 ScpA family protein compare
ABIE51_RS06730 -2.9 -5.2 LPS assembly lipoprotein LptE compare
ABIE51_RS15440 -2.9 -7.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE51_RS19180 -2.9 -5.6 SURF1 family protein compare
ABIE51_RS04805 -2.9 -2.7 A24 family peptidase compare
ABIE51_RS11120 -2.8 -6.0 ATP-binding cassette domain-containing protein compare
ABIE51_RS16735 -2.8 -5.0 flagellar export chaperone FliS compare
ABIE51_RS06250 -2.8 -10.0 imidazolonepropionase compare
ABIE51_RS13530 -2.8 -13.1 polyhydroxyalkanoate synthesis repressor PhaR compare
ABIE51_RS11115 -2.8 -3.7 molybdate ABC transporter permease subunit compare
ABIE51_RS08720 -2.7 -7.7 heme exporter protein CcmB compare
ABIE51_RS09425 -2.7 -1.9 helix-turn-helix domain-containing protein compare
ABIE51_RS04475 -2.7 -13.8 leucyl aminopeptidase compare
ABIE51_RS01110 -2.7 -9.4 c-type cytochrome compare
ABIE51_RS03155 -2.7 -11.7 lytic murein transglycosylase B compare
ABIE51_RS15435 -2.6 -15.7 cytochrome bc complex cytochrome b subunit compare
ABIE51_RS02450 -2.6 -6.3 MarR family transcriptional regulator compare
ABIE51_RS15970 -2.6 -5.5 HPr(Ser) kinase/phosphatase compare
ABIE51_RS14060 -2.6 -6.3 MBL fold metallo-hydrolase compare
ABIE51_RS14150 -2.6 -10.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE51_RS15430 -2.6 -13.7 cytochrome c1 compare
ABIE51_RS06555 -2.6 -7.8 protease modulator HflC compare
ABIE51_RS17705 -2.5 -16.8 protein-disulfide reductase DsbD compare
ABIE51_RS09340 -2.5 -6.3 (d)CMP kinase compare
ABIE51_RS17740 -2.5 -12.0 hypothetical protein compare
ABIE51_RS05295 -2.5 -5.7 response regulator transcription factor compare
ABIE51_RS15015 -2.5 -4.4 preprotein translocase subunit YajC compare
ABIE51_RS09065 -2.4 -8.6 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE51_RS05175 -2.4 -8.5 hypothetical protein compare
ABIE51_RS08725 -2.4 -6.2 heme ABC exporter ATP-binding protein CcmA compare
ABIE51_RS01265 -2.3 -10.6 twin-arginine translocase subunit TatC compare
ABIE51_RS19015 -2.3 -11.4 cytochrome c4 compare
ABIE51_RS17200 -2.3 -11.8 citrate synthase compare
ABIE51_RS13205 -2.3 -4.2 hydroxymethylglutaryl-CoA lyase compare
ABIE51_RS04710 -2.3 -1.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABIE51_RS18995 -2.3 -8.7 alpha-glucosidase family protein compare
ABIE51_RS09280 -2.3 -11.5 cytochrome c compare
ABIE51_RS09375 -2.3 -8.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABIE51_RS04535 -2.3 -8.1 type II secretion system major pseudopilin GspG compare
ABIE51_RS09275 -2.2 -10.9 cytochrome c compare
ABIE51_RS19205 -2.2 -17.8 cytochrome c oxidase subunit I compare
ABIE51_RS06785 -2.2 -14.5 ribonuclease G compare
ABIE51_RS04645 -2.2 -1.7 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
ABIE51_RS19210 -2.1 -12.3 cytochrome c oxidase subunit II compare
ABIE51_RS19195 -2.1 -13.6 cytochrome c oxidase assembly protein compare
ABIE51_RS08715 -2.1 -12.5 heme ABC transporter permease CcmC compare
ABIE51_RS17320 -2.1 -16.8 aminopeptidase P N-terminal domain-containing protein compare
ABIE51_RS16415 -2.1 -12.8 aldo/keto reductase compare
ABIE51_RS06020 -2.1 -15.4 2-methylcitrate synthase compare
ABIE51_RS08780 -2.0 -5.8 SMC-Scp complex subunit ScpB compare
ABIE51_RS15400 -2.0 -3.6 Trm112 family protein compare
ABIE51_RS06240 -2.0 -9.6 30S ribosomal protein THX compare
ABIE51_RS08695 -2.0 -6.8 DsbE family thiol:disulfide interchange protein compare
ABIE51_RS04380 -2.0 -10.4 CoA transferase subunit A compare
ABIE51_RS04490 -2.0 -8.2 RDD family protein compare
ABIE51_RS00635 -2.0 -5.7 hybrid sensor histidine kinase/response regulator compare
ABIE51_RS17260 -2.0 -11.3 RidA family protein compare
ABIE51_RS15375 -2.0 -7.4 SDR family NAD(P)-dependent oxidoreductase compare
ABIE51_RS10925 -2.0 -5.0 FadR/GntR family transcriptional regulator compare
ABIE51_RS08700 -2.0 -12.8 heme lyase CcmF/NrfE family subunit compare
ABIE51_RS08705 -2.0 -8.8 cytochrome c maturation protein CcmE compare
ABIE51_RS03135 -2.0 -6.2 rod shape-determining protein MreC compare
ABIE51_RS17400 -1.9 -14.7 DUF192 domain-containing protein compare
ABIE51_RS17500 -1.9 -14.6 helix-turn-helix domain-containing protein compare
ABIE51_RS14345 -1.9 -7.5 aminomethyl-transferring glycine dehydrogenase compare
ABIE51_RS04620 -1.9 -12.7 serine hydroxymethyltransferase compare
ABIE51_RS08690 -1.9 -3.6 cytochrome c-type biogenesis protein compare
ABIE51_RS12635 -1.9 -4.7 hypothetical protein compare
ABIE51_RS11110 -1.9 -7.4 molybdate ABC transporter substrate-binding protein compare
ABIE51_RS04850 -1.8 -12.5 sigma-54 dependent transcriptional regulator compare
ABIE51_RS19190 -1.8 -13.4 cytochrome c oxidase subunit 3 compare
ABIE51_RS08210 -1.8 -7.4 SCO family protein compare
ABIE51_RS19105 -1.8 -10.0 pteridine reductase compare
ABIE51_RS12565 -1.8 -14.0 acyl-CoA dehydrogenase family protein compare
ABIE51_RS15095 -1.8 -4.9 TMEM43 family protein compare
ABIE51_RS04385 -1.8 -4.6 CoA transferase subunit B compare
ABIE51_RS04530 -1.8 -8.4 type II secretion system F family protein compare
ABIE51_RS15990 -1.8 -2.1 PTS sugar transporter subunit IIA compare
ABIE51_RS08810 -1.8 -15.2 glucoamylase family protein compare
ABIE51_RS04835 -1.8 -9.4 glycosyltransferase family 2 protein compare
ABIE51_RS11790 -1.7 -10.9 4a-hydroxytetrahydrobiopterin dehydratase compare
ABIE51_RS11675 -1.7 -7.8 type II toxin-antitoxin system RatA family toxin compare
ABIE51_RS04545 -1.7 -4.6 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABIE51_RS16860 -1.7 -2.8 MinD/ParA family protein compare
ABIE51_RS02175 -1.7 -12.7 signal peptide peptidase SppA compare
ABIE51_RS09430 -1.7 -8.2 tetratricopeptide repeat protein compare
ABIE51_RS13455 -1.7 -4.2 membrane protein insertion efficiency factor YidD compare
ABIE51_RS04825 -1.7 -4.8 pilin compare
ABIE51_RS08885 -1.7 -2.0 cell division protein ZipA compare
ABIE51_RS19175 -1.6 -3.8 hypothetical protein compare
ABIE51_RS17505 -1.6 -12.1 winged helix-turn-helix domain-containing protein compare
ABIE51_RS17710 -1.6 -10.8 TlpA disulfide reductase family protein compare
ABIE51_RS14120 -1.6 -7.3 peptidyl-prolyl cis-trans isomerase compare
ABIE51_RS07575 -1.6 -2.2 FKBP-type peptidyl-prolyl cis-trans isomerase N-terminal domain-containing protein compare
ABIE51_RS17660 -1.6 -9.5 malonic semialdehyde reductase compare
ABIE51_RS09415 -1.6 -12.6 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABIE51_RS08870 -1.6 -7.6 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
ABIE51_RS00925 -1.5 -13.8 phenylalanine 4-monooxygenase compare
ABIE51_RS05170 -1.5 -13.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE51_RS09100 -1.5 -9.5 acyl-CoA dehydrogenase family protein compare
ABIE51_RS16360 -1.5 -3.3 glycine cleavage system protein GcvH compare
ABIE51_RS09370 -1.5 -7.9 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABIE51_RS08820 -1.5 -11.2 sugar ABC transporter permease compare
ABIE51_RS04520 -1.5 -9.4 type II secretion system ATPase GspE compare
ABIE51_RS01095 -1.5 -6.5 cell division protein ZapE compare
ABIE51_RS04550 -1.5 -4.8 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABIE51_RS19170 -1.4 -9.2 COX15/CtaA family protein compare
ABIE51_RS06015 -1.4 -2.2 methylisocitrate lyase compare
ABIE51_RS04555 -1.4 -10.5 type II secretion system protein GspK compare
ABIE51_RS16350 -1.4 -11.9 serine hydrolase domain-containing protein compare
ABIE51_RS11515 -1.4 -6.2 high frequency lysogenization protein HflD compare
ABIE51_RS00515 -1.4 -4.2 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABIE51_RS08825 -1.4 -7.3 carbohydrate ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Lysobacter sp. OAE881 in carbon source experiments

For carbon source Ying_AminoAcid20 across organisms