Experiment set3S454 for Parabacteroides merdae CL09T00C40

Compare to:

diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day7

200 most important genes:

  gene name fitness t score description  
HMPREF1078_RS10475 -4.6 -8.9 glycosyltransferase family 4 protein compare
HMPREF1078_RS17495 -4.6 -8.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
HMPREF1078_RS17480 -4.5 -4.4 glycosyltransferase compare
HMPREF1078_RS17490 -4.5 -4.4 FdtA/QdtA family cupin domain-containing protein compare
HMPREF1078_RS00795 -4.4 -7.3 sigma-70 family RNA polymerase sigma factor compare
HMPREF1078_RS17485 -4.2 -9.7 glycosyl transferase compare
HMPREF1078_RS06805 -4.1 -2.9 phosphoribosylamine--glycine ligase compare
HMPREF1078_RS03090 -4.0 -2.7 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS10470 -3.8 -5.9 glycosyltransferase compare
HMPREF1078_RS00925 -3.8 -2.6 UpxY family transcription antiterminator compare
HMPREF1078_RS15255 -3.8 -2.6 ribosome maturation factor RimM compare
HMPREF1078_RS00090 -3.7 -5.7 GNAT family N-acetyltransferase compare
HMPREF1078_RS05545 -3.7 -2.6 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1078_RS10465 -3.7 -6.7 hypothetical protein compare
HMPREF1078_RS06740 -3.6 -2.5 DUF4271 domain-containing protein compare
HMPREF1078_RS17560 -3.5 -4.2 adenosylhomocysteinase compare
HMPREF1078_RS13640 -3.5 -4.7 SDR family oxidoreductase compare
HMPREF1078_RS04605 -3.4 -2.4 GatB/YqeY domain-containing protein compare
HMPREF1078_RS04685 -3.4 -1.2 30S ribosome-binding factor RbfA compare
HMPREF1078_RS13545 -3.3 -2.3 diaminopimelate decarboxylase compare
HMPREF1078_RS07755 -3.3 -2.3 outer membrane protein assembly factor BamD compare
HMPREF1078_RS13645 -3.3 -5.9 LacI family DNA-binding transcriptional regulator compare
HMPREF1078_RS07310 -3.2 -3.8 methionine--tRNA ligase compare
HMPREF1078_RS12115 -3.2 -2.2 thioredoxin compare
HMPREF1078_RS17475 -3.1 -15.5 nucleotide sugar dehydrogenase compare
HMPREF1078_RS04325 -3.1 -2.2 phosphoribosylformylglycinamidine synthase compare
HMPREF1078_RS05930 -3.1 -3.0 glycine cleavage system protein GcvH compare
HMPREF1078_RS10780 -3.1 -4.8 capsule assembly Wzi family protein compare
HMPREF1078_RS05615 -3.1 -6.9 glucuronate isomerase compare
HMPREF1078_RS13635 -3.1 -4.2 mannonate dehydratase compare
HMPREF1078_RS17255 -3.0 -3.6 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS16160 -3.0 -2.1 gliding motility lipoprotein GldH compare
HMPREF1078_RS00070 -3.0 -7.8 glycosyltransferase compare
HMPREF1078_RS14685 -3.0 -2.1 aspartate 1-decarboxylase compare
HMPREF1078_RS17055 -2.9 -10.7 trigger factor compare
HMPREF1078_RS13650 -2.9 -2.8 hypothetical protein compare
HMPREF1078_RS07315 -2.9 -8.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
HMPREF1078_RS14700 -2.8 -3.3 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1078_RS14540 -2.8 -7.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1078_RS05840 -2.8 -8.1 lipopolysaccharide biosynthesis protein compare
HMPREF1078_RS11820 -2.7 -1.9 M28 family peptidase compare
HMPREF1078_RS10580 -2.7 -5.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1078_RS11290 -2.7 -2.7 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1078_RS10745 -2.7 -6.1 MlaD family protein compare
HMPREF1078_RS04110 -2.7 -1.9 hypothetical protein compare
HMPREF1078_RS00080 -2.7 -9.6 polysaccharide deacetylase family protein compare
HMPREF1078_RS17080 -2.7 -1.8 ATP-binding cassette domain-containing protein compare
HMPREF1078_RS01625 -2.6 -1.0 DUF4248 domain-containing protein compare
HMPREF1078_RS01870 -2.6 -1.8 phosphatase PAP2 family protein compare
HMPREF1078_RS00680 -2.6 -3.6 glycoside hydrolase family 97 protein compare
HMPREF1078_RS06840 -2.6 -4.4 polysaccharide deacetylase family protein compare
HMPREF1078_RS02430 -2.6 -1.8 lipocalin-like domain-containing protein compare
HMPREF1078_RS13995 -2.6 -5.8 hypothetical protein compare
HMPREF1078_RS14945 -2.6 -1.8 DUF1282 family protein compare
HMPREF1078_RS11930 -2.5 -1.8 VOC family protein compare
HMPREF1078_RS15845 -2.5 -3.0 copper homeostasis protein CutC compare
HMPREF1078_RS17460 -2.5 -12.4 glycosyltransferase family 4 protein compare
HMPREF1078_RS17700 -2.5 -1.7 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS05280 -2.5 -3.1 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS02175 -2.5 -2.5 patatin-like phospholipase family protein compare
HMPREF1078_RS08760 -2.5 -0.9 tRNA-Lys compare
HMPREF1078_RS16340 -2.5 -14.6 SusC/RagA family TonB-linked outer membrane protein compare
HMPREF1078_RS17075 -2.5 -1.7 ABC transporter permease compare
HMPREF1078_RS10800 -2.5 -9.7 AraC family transcriptional regulator compare
HMPREF1078_RS07185 -2.5 -6.8 DUF5672 family protein compare
HMPREF1078_RS14535 -2.5 -9.8 DUF4837 family protein compare
HMPREF1078_RS12510 -2.5 -1.3 F0F1 ATP synthase subunit B compare
HMPREF1078_RS13435 -2.4 -5.2 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HMPREF1078_RS11655 -2.4 -6.2 FprA family A-type flavoprotein compare
HMPREF1078_RS12625 -2.4 -8.9 hybrid sensor histidine kinase/response regulator transcription factor compare
HMPREF1078_RS06560 -2.4 -6.0 two-component regulator propeller domain-containing protein compare
HMPREF1078_RS00085 -2.4 -6.9 PIG-L family deacetylase compare
HMPREF1078_RS05835 -2.4 -2.1 M20 family metallo-hydrolase compare
HMPREF1078_RS04710 -2.4 -6.9 DUF4954 family protein compare
HMPREF1078_RS11680 -2.4 -5.5 DUF1735 domain-containing protein compare
HMPREF1078_RS16130 -2.3 -1.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HMPREF1078_RS01450 -2.3 -2.8 cytochrome c biogenesis protein CcsA compare
HMPREF1078_RS08705 -2.3 -3.9 aldose epimerase family protein compare
HMPREF1078_RS13430 -2.3 -4.9 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS13695 -2.3 -3.1 DUF5063 domain-containing protein compare
HMPREF1078_RS12790 -2.3 -1.6 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1078_RS04485 -2.3 -5.3 T9SS type A sorting domain-containing protein compare
HMPREF1078_RS10885 -2.3 -3.1 tyrosine recombinase XerC compare
HMPREF1078_RS15335 -2.3 -2.2 acetylglutamate kinase compare
HMPREF1078_RS19910 -2.3 -2.0 UDP-2,3-diacylglucosamine diphosphatase compare
HMPREF1078_RS04440 -2.3 -1.6 AAA family ATPase compare
HMPREF1078_RS14920 -2.3 -3.4 ATPase compare
HMPREF1078_RS07615 -2.2 -2.7 recombination mediator RecR compare
HMPREF1078_RS08315 -2.2 -1.5 DUF3408 domain-containing protein compare
HMPREF1078_RS04935 -2.2 -2.2 iron-sulfur cluster assembly protein compare
HMPREF1078_RS07215 -2.2 -2.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1078_RS19685 -2.2 -1.4 hypothetical protein compare
HMPREF1078_RS05115 -2.2 -2.0 helix-turn-helix domain-containing protein compare
HMPREF1078_RS02145 -2.2 -9.0 serine hydroxymethyltransferase compare
HMPREF1078_RS12470 -2.2 -1.5 ABC transporter substrate-binding protein compare
HMPREF1078_RS11645 -2.2 -2.1 tetratricopeptide repeat protein compare
HMPREF1078_RS16730 -2.2 -4.6 acyltransferase compare
HMPREF1078_RS01980 -2.2 -3.6 3'-5' exonuclease compare
HMPREF1078_RS00940 -2.2 -2.1 hypothetical protein compare
HMPREF1078_RS12715 -2.2 -5.7 oxaloacetate decarboxylase compare
HMPREF1078_RS18905 -2.2 -2.1 diacylglycerol kinase family protein compare
HMPREF1078_RS13185 -2.2 -1.5 cytochrome c biogenesis protein CcdA compare
HMPREF1078_RS02560 -2.2 -4.4 hypothetical protein compare
HMPREF1078_RS11430 -2.1 -1.5 iron ABC transporter permease compare
HMPREF1078_RS07605 -2.1 -2.1 GNAT family N-acetyltransferase compare
HMPREF1078_RS04840 -2.1 -2.5 type IX secretion system sortase PorU compare
HMPREF1078_RS16345 -2.1 -11.6 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1078_RS16335 -2.1 -13.9 hybrid sensor histidine kinase/response regulator transcription factor compare
HMPREF1078_RS05935 -2.1 -1.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1078_RS07850 -2.1 -3.4 AAA family ATPase compare
HMPREF1078_RS17540 -2.1 -1.4 glycosyltransferase family 2 protein compare
HMPREF1078_RS14600 -2.1 -0.7 tRNA-Gly compare
HMPREF1078_RS05485 -2.1 -1.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1078_RS00075 -2.0 -6.0 glycosyltransferase compare
HMPREF1078_RS11565 -2.0 -5.0 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
HMPREF1078_RS12475 -2.0 -1.4 hypothetical protein compare
HMPREF1078_RS04515 -2.0 -2.4 DUF1080 domain-containing protein compare
HMPREF1078_RS14200 -2.0 -1.4 shikimate dehydrogenase compare
HMPREF1078_RS15280 -2.0 -2.4 malonyl-ACP O-methyltransferase BioC compare
HMPREF1078_RS07740 -2.0 -3.9 porin family protein compare
HMPREF1078_RS09965 -2.0 -3.9 SPOR domain-containing protein compare
HMPREF1078_RS00785 -2.0 -10.5 hypothetical protein compare
HMPREF1078_RS07780 -2.0 -1.4 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1078_RS04510 -2.0 -2.7 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS17380 -2.0 -1.8 ABC transporter ATP-binding protein compare
HMPREF1078_RS07725 -2.0 -2.4 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1078_RS14085 -2.0 -1.4 lysophospholipid acyltransferase family protein compare
HMPREF1078_RS19445 -2.0 -2.3 hypothetical protein compare
HMPREF1078_RS19630 -2.0 -2.3 hypothetical protein compare
HMPREF1078_RS13690 -2.0 -3.5 3'-5' exonuclease compare
HMPREF1078_RS00095 -2.0 -2.3 recombinase RecA compare
HMPREF1078_RS07320 -2.0 -6.5 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS09000 -1.9 -1.9 ParA family protein compare
HMPREF1078_RS02550 -1.9 -2.3 protein phosphatase 2C domain-containing protein compare
HMPREF1078_RS04980 -1.9 -2.6 hypothetical protein compare
HMPREF1078_RS15400 -1.9 -8.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1078_RS04100 -1.9 -1.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
HMPREF1078_RS01140 -1.9 -6.3 hydrogen peroxide-inducible genes activator compare
HMPREF1078_RS10435 -1.9 -1.0 tRNA-Thr compare
HMPREF1078_RS00965 -1.9 -1.3 V-type ATPase 116kDa subunit family protein compare
HMPREF1078_RS01700 -1.9 -2.6 adenylyl-sulfate kinase compare
HMPREF1078_RS08715 -1.9 -1.3 galactokinase compare
HMPREF1078_RS14300 -1.9 -3.6 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1078_RS02300 -1.9 -9.9 alpha-galactosidase compare
HMPREF1078_RS19515 -1.9 -0.9 hypothetical protein compare
HMPREF1078_RS14545 -1.8 -1.8 adenylyltransferase/cytidyltransferase family protein compare
HMPREF1078_RS15315 -1.8 -2.2 DUF4831 family protein compare
HMPREF1078_RS08505 -1.8 -1.8 glycosyltransferase family 39 protein compare
HMPREF1078_RS04555 -1.8 -1.3 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS07205 -1.8 -1.2 shikimate kinase compare
HMPREF1078_RS10575 -1.8 -5.7 argininosuccinate synthase compare
HMPREF1078_RS15765 -1.8 -1.2 RNA polymerase sigma factor compare
HMPREF1078_RS08050 -1.8 -2.7 membrane protein compare
HMPREF1078_RS16215 -1.8 -4.3 preprotein translocase subunit YajC compare
HMPREF1078_RS13270 -1.8 -1.2 ATP-binding protein compare
HMPREF1078_RS01120 -1.8 -6.6 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
HMPREF1078_RS11685 -1.8 -6.8 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1078_RS05870 -1.8 -1.2 PglZ domain-containing protein compare
HMPREF1078_RS07220 -1.8 -3.6 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1078_RS04365 -1.8 -2.5 hypothetical protein compare
HMPREF1078_RS06160 -1.8 -7.5 TIGR00341 family protein compare
HMPREF1078_RS14620 -1.8 -1.7 DNA replication and repair protein RecF compare
HMPREF1078_RS06155 -1.8 -7.3 S46 family peptidase compare
HMPREF1078_RS08660 -1.7 -1.2 glycosyltransferase family 2 protein compare
HMPREF1078_RS02790 -1.7 -3.0 HigA family addiction module antitoxin compare
HMPREF1078_RS10880 -1.7 -7.3 ribosome-associated translation inhibitor RaiA compare
HMPREF1078_RS09765 -1.7 -3.3 CinA family protein compare
HMPREF1078_RS05620 -1.7 -2.9 tetratricopeptide repeat protein compare
HMPREF1078_RS04770 -1.7 -1.6 MmcQ/YjbR family DNA-binding protein compare
HMPREF1078_RS00950 -1.7 -3.5 V-type ATP synthase subunit A compare
HMPREF1078_RS15575 -1.7 -2.3 glucosamine-6-phosphate deaminase compare
HMPREF1078_RS05200 -1.7 -5.6 MFS transporter compare
HMPREF1078_RS00060 -1.7 -1.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
HMPREF1078_RS12480 -1.7 -1.2 TonB-dependent receptor compare
HMPREF1078_RS00825 -1.7 -7.3 gliding motility-associated C-terminal domain-containing protein compare
HMPREF1078_RS19705 -1.7 -1.1 hypothetical protein compare
HMPREF1078_RS13915 -1.7 -1.2 tetratricopeptide repeat protein compare
HMPREF1078_RS12720 -1.7 -4.5 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1078_RS07610 -1.7 -2.8 glycosyltransferase family 2 protein compare
HMPREF1078_RS00790 -1.7 -9.8 outer membrane protein transport protein compare
HMPREF1078_RS15370 -1.7 -4.5 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1078_RS15405 -1.6 -4.2 NAD(P)-dependent oxidoreductase compare
HMPREF1078_RS05515 -1.6 -1.1 gliding motility protein GldN compare
HMPREF1078_RS10785 -1.6 -6.8 lysophospholipid acyltransferase family protein compare
HMPREF1078_RS17010 -1.6 -4.4 hypothetical protein compare
HMPREF1078_RS00960 -1.6 -1.0 V-type ATP synthase subunit D compare
HMPREF1078_RS11005 -1.6 -7.8 tetratricopeptide repeat protein compare
HMPREF1078_RS16320 -1.6 -2.2 hypothetical protein compare
HMPREF1078_RS03235 -1.6 -1.3 hypothetical protein compare
HMPREF1078_RS11690 -1.6 -9.3 TonB-dependent receptor compare
HMPREF1078_RS11105 -1.6 -1.9 type IX secretion system protein PorQ compare
HMPREF1078_RS10005 -1.6 -1.1 TonB-dependent receptor compare
HMPREF1078_RS13735 -1.6 -8.1 hypothetical protein compare
HMPREF1078_RS05205 -1.6 -5.0 carbohydrate kinase compare
HMPREF1078_RS15325 -1.6 -1.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase compare
HMPREF1078_RS07145 -1.6 -7.7 discoidin domain-containing protein compare
HMPREF1078_RS13550 -1.6 -6.4 aspartate kinase compare
HMPREF1078_RS04820 -1.6 -1.1 type IX secretion system outer membrane channel protein PorV compare
HMPREF1078_RS04700 -1.6 -1.9 type II 3-dehydroquinate dehydratase compare
HMPREF1078_RS07960 -1.6 -2.3 helix-turn-helix domain-containing protein compare


Specific Phenotypes

For 1 genes in this experiment

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono in Parabacteroides merdae CL09T00C40

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono across organisms