Experiment set3S454 for Parabacteroides merdae CL09T00C40

diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day7

Group: mouse
Media: + diet=StandardDiet; sample=FecalPellet; inoculation=Mono
Culturing: Pmerdae_CL09T00C40_ML3
By: Saria on 5/21/25

Specific Phenotypes

For 1 genes in this experiment

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono in Parabacteroides merdae CL09T00C40

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono across organisms

SEED Subsystems

Subsystem	#Specific
Glycolysis and Gluconeogenesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Glycolysis / Gluconeogenesis
• Pentose phosphate pathway
• Fructose and mannose metabolism
• Carbon fixation in photosynthetic organisms
• Biosynthesis of phenylpropanoids

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
sucrose biosynthesis I (from photosynthesis)	9	6	1
glycolysis II (from fructose 6-phosphate)	11	10	1
formaldehyde assimilation III (dihydroxyacetone cycle)	12	11	1
gluconeogenesis III	12	10	1
gluconeogenesis I	13	11	1
glycolysis I (from glucose 6-phosphate)	13	11	1
Calvin-Benson-Bassham cycle	13	9	1
superpathway of glycolysis and the Entner-Doudoroff pathway	17	14	1
oxygenic photosynthesis	17	10	1
superpathway of hexitol degradation (bacteria)	18	12	1
hexitol fermentation to lactate, formate, ethanol and acetate	19	13	1
superpathway of anaerobic sucrose degradation	19	13	1
superpathway of N-acetylneuraminate degradation	22	16	1
ethene biosynthesis V (engineered)	25	16	1
superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass	26	17	1
photosynthetic 3-hydroxybutanoate biosynthesis (engineered)	26	13	1
1-butanol autotrophic biosynthesis (engineered)	27	13	1