Experiment set3S453 for Parabacteroides merdae CL09T00C40

Compare to:

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7

200 most important genes:

  gene name fitness t score description  
HMPREF1078_RS00195 -5.0 -3.5 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1078_RS14505 -5.0 -3.5 hypothetical protein compare
HMPREF1078_RS17490 -5.0 -5.9 FdtA/QdtA family cupin domain-containing protein compare
HMPREF1078_RS10475 -5.0 -4.8 glycosyltransferase family 4 protein compare
HMPREF1078_RS17480 -4.9 -8.7 glycosyltransferase compare
HMPREF1078_RS17495 -4.8 -12.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
HMPREF1078_RS17485 -4.7 -10.9 glycosyl transferase compare
HMPREF1078_RS06805 -4.4 -6.0 phosphoribosylamine--glycine ligase compare
HMPREF1078_RS05545 -4.3 -3.0 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1078_RS03090 -4.3 -3.0 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS13640 -4.3 -3.0 SDR family oxidoreductase compare
HMPREF1078_RS10465 -4.3 -2.9 hypothetical protein compare
HMPREF1078_RS00925 -4.2 -2.9 UpxY family transcription antiterminator compare
HMPREF1078_RS10470 -4.2 -4.1 glycosyltransferase compare
HMPREF1078_RS00795 -4.1 -9.1 sigma-70 family RNA polymerase sigma factor compare
HMPREF1078_RS04685 -3.7 -1.6 30S ribosome-binding factor RbfA compare
HMPREF1078_RS14670 -3.7 -9.9 DUF4270 domain-containing protein compare
HMPREF1078_RS05605 -3.7 -2.5 sugar kinase compare
HMPREF1078_RS13545 -3.7 -3.6 diaminopimelate decarboxylase compare
HMPREF1078_RS10780 -3.6 -3.5 capsule assembly Wzi family protein compare
HMPREF1078_RS12115 -3.6 -2.5 thioredoxin compare
HMPREF1078_RS10745 -3.6 -2.5 MlaD family protein compare
HMPREF1078_RS15825 -3.6 -4.9 ketoacyl-ACP synthase III compare
HMPREF1078_RS07755 -3.6 -2.4 outer membrane protein assembly factor BamD compare
HMPREF1078_RS10030 -3.5 -11.9 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1078_RS00070 -3.5 -7.5 glycosyltransferase compare
HMPREF1078_RS04325 -3.5 -7.1 phosphoribosylformylglycinamidine synthase compare
HMPREF1078_RS10015 -3.5 -14.4 acyl-CoA carboxylase subunit beta compare
HMPREF1078_RS13635 -3.4 -4.7 mannonate dehydratase compare
HMPREF1078_RS14685 -3.4 -2.3 aspartate 1-decarboxylase compare
HMPREF1078_RS04110 -3.3 -3.3 hypothetical protein compare
HMPREF1078_RS05610 -3.3 -4.5 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1078_RS16160 -3.3 -5.0 gliding motility lipoprotein GldH compare
HMPREF1078_RS04980 -3.3 -2.3 hypothetical protein compare
HMPREF1078_RS17080 -3.2 -2.2 ATP-binding cassette domain-containing protein compare
HMPREF1078_RS11820 -3.2 -2.2 M28 family peptidase compare
HMPREF1078_RS05560 -3.2 -4.8 DUF3108 domain-containing protein compare
HMPREF1078_RS09125 -3.1 -2.1 hypothetical protein compare
HMPREF1078_RS10785 -3.1 -7.8 lysophospholipid acyltransferase family protein compare
HMPREF1078_RS14700 -3.1 -4.7 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1078_RS02430 -3.1 -2.1 lipocalin-like domain-containing protein compare
HMPREF1078_RS07185 -3.1 -7.1 DUF5672 family protein compare
HMPREF1078_RS02175 -3.1 -2.1 patatin-like phospholipase family protein compare
HMPREF1078_RS01870 -3.0 -2.1 phosphatase PAP2 family protein compare
HMPREF1078_RS15400 -3.0 -8.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1078_RS07215 -3.0 -2.1 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1078_RS07740 -3.0 -2.1 porin family protein compare
HMPREF1078_RS15720 -2.9 -4.0 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS17075 -2.9 -2.8 ABC transporter permease compare
HMPREF1078_RS16055 -2.9 -5.5 aminoglycoside phosphotransferase family protein compare
HMPREF1078_RS17700 -2.8 -4.7 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS17540 -2.8 -2.0 glycosyltransferase family 2 protein compare
HMPREF1078_RS07220 -2.8 -2.8 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1078_RS05615 -2.8 -8.1 glucuronate isomerase compare
HMPREF1078_RS00080 -2.8 -9.4 polysaccharide deacetylase family protein compare
HMPREF1078_RS16730 -2.8 -4.6 acyltransferase compare
HMPREF1078_RS06010 -2.8 -8.6 tyrosine-protein phosphatase compare
HMPREF1078_RS13725 -2.8 -1.9 sigma-70 family RNA polymerase sigma factor compare
HMPREF1078_RS14980 -2.7 -3.8 DUF4296 domain-containing protein compare
HMPREF1078_RS05935 -2.7 -1.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1078_RS19790 -2.7 -1.1 hypothetical protein compare
HMPREF1078_RS11430 -2.7 -1.9 iron ABC transporter permease compare
HMPREF1078_RS10880 -2.7 -6.5 ribosome-associated translation inhibitor RaiA compare
HMPREF1078_RS19685 -2.7 -1.8 hypothetical protein compare
HMPREF1078_RS13185 -2.7 -1.8 cytochrome c biogenesis protein CcdA compare
HMPREF1078_RS12470 -2.6 -1.8 ABC transporter substrate-binding protein compare
HMPREF1078_RS13235 -2.6 -1.5 tRNA-Thr compare
HMPREF1078_RS04555 -2.6 -1.8 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS08760 -2.6 -1.1 tRNA-Lys compare
HMPREF1078_RS17725 -2.6 -4.3 transcription elongation factor GreA compare
HMPREF1078_RS13320 -2.6 -5.3 NADP-specific glutamate dehydrogenase compare
HMPREF1078_RS17460 -2.6 -13.7 glycosyltransferase family 4 protein compare
HMPREF1078_RS12410 -2.6 -1.4 signal peptidase I compare
HMPREF1078_RS05930 -2.6 -4.3 glycine cleavage system protein GcvH compare
HMPREF1078_RS00090 -2.5 -7.6 GNAT family N-acetyltransferase compare
HMPREF1078_RS12475 -2.5 -1.7 hypothetical protein compare
HMPREF1078_RS00075 -2.5 -5.8 glycosyltransferase compare
HMPREF1078_RS05870 -2.5 -1.7 PglZ domain-containing protein compare
HMPREF1078_RS07205 -2.5 -1.7 shikimate kinase compare
HMPREF1078_RS18905 -2.5 -3.0 diacylglycerol kinase family protein compare
HMPREF1078_RS11290 -2.5 -3.8 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1078_RS14200 -2.5 -1.7 shikimate dehydrogenase compare
HMPREF1078_RS10885 -2.5 -4.1 tyrosine recombinase XerC compare
HMPREF1078_RS14240 -2.5 -3.7 thioredoxin domain-containing protein compare
HMPREF1078_RS00895 -2.4 -4.1 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1078_RS04820 -2.4 -1.7 type IX secretion system outer membrane channel protein PorV compare
HMPREF1078_RS15405 -2.4 -4.6 NAD(P)-dependent oxidoreductase compare
HMPREF1078_RS15410 -2.4 -8.8 DUF1015 domain-containing protein compare
HMPREF1078_RS04415 -2.4 -4.8 DUF3127 domain-containing protein compare
HMPREF1078_RS04100 -2.4 -1.4 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
HMPREF1078_RS07780 -2.3 -1.6 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1078_RS08505 -2.3 -1.6 glycosyltransferase family 39 protein compare
HMPREF1078_RS15765 -2.3 -2.3 RNA polymerase sigma factor compare
HMPREF1078_RS13270 -2.3 -1.6 ATP-binding protein compare
HMPREF1078_RS05285 -2.3 -6.6 DUF2975 domain-containing protein compare
HMPREF1078_RS18645 -2.3 -0.9 transposase compare
HMPREF1078_RS11315 -2.3 -7.8 argininosuccinate lyase compare
HMPREF1078_RS10120 -2.3 -2.2 glutamine-hydrolyzing GMP synthase compare
HMPREF1078_RS07320 -2.3 -7.1 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS07210 -2.3 -4.1 alanine dehydrogenase compare
HMPREF1078_RS08660 -2.3 -1.6 glycosyltransferase family 2 protein compare
HMPREF1078_RS05500 -2.3 -1.6 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HMPREF1078_RS13650 -2.3 -4.8 hypothetical protein compare
HMPREF1078_RS10020 -2.3 -5.5 OadG family transporter subunit compare
HMPREF1078_RS05505 -2.2 -1.5 gliding motility protein GldL compare
HMPREF1078_RS05280 -2.2 -3.4 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS00765 -2.2 -5.9 FecR domain-containing protein compare
HMPREF1078_RS05840 -2.2 -6.8 lipopolysaccharide biosynthesis protein compare
HMPREF1078_RS09325 -2.2 -1.5 conjugative transposon protein TraK compare
HMPREF1078_RS14535 -2.2 -9.0 DUF4837 family protein compare
HMPREF1078_RS12480 -2.2 -2.1 TonB-dependent receptor compare
HMPREF1078_RS06740 -2.2 -7.5 DUF4271 domain-containing protein compare
HMPREF1078_RS17380 -2.2 -1.9 ABC transporter ATP-binding protein compare
HMPREF1078_RS06425 -2.2 -2.1 DUF4252 domain-containing protein compare
HMPREF1078_RS04500 -2.2 -6.3 cytochrome ubiquinol oxidase subunit I compare
HMPREF1078_RS16875 -2.2 -1.5 type I methionyl aminopeptidase compare
HMPREF1078_RS01730 -2.1 -2.5 hypothetical protein compare
HMPREF1078_RS09765 -2.1 -3.5 CinA family protein compare
HMPREF1078_RS15845 -2.1 -3.5 copper homeostasis protein CutC compare
HMPREF1078_RS17045 -2.1 -8.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
HMPREF1078_RS16215 -2.1 -4.8 preprotein translocase subunit YajC compare
HMPREF1078_RS17435 -2.1 -7.4 UDP-glucose/GDP-mannose dehydrogenase family protein compare
HMPREF1078_RS04365 -2.1 -3.1 hypothetical protein compare
HMPREF1078_RS12530 -2.1 -4.6 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1078_RS00095 -2.1 -4.8 recombinase RecA compare
HMPREF1078_RS07760 -2.1 -3.1 hypothetical protein compare
HMPREF1078_RS05160 -2.1 -1.4 mannose-1-phosphate guanylyltransferase compare
HMPREF1078_RS04440 -2.1 -2.4 AAA family ATPase compare
HMPREF1078_RS04705 -2.1 -1.4 site-specific tyrosine recombinase XerD compare
HMPREF1078_RS13550 -2.0 -6.5 aspartate kinase compare
HMPREF1078_RS19630 -2.0 -2.4 hypothetical protein compare
HMPREF1078_RS04355 -2.0 -1.4 hypothetical protein compare
HMPREF1078_RS15325 -2.0 -2.4 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase compare
HMPREF1078_RS14620 -2.0 -2.4 DNA replication and repair protein RecF compare
HMPREF1078_RS07850 -2.0 -4.5 AAA family ATPase compare
HMPREF1078_RS10025 -2.0 -5.4 biotin/lipoyl-binding protein compare
HMPREF1078_RS11070 -2.0 -1.9 DUF1573 domain-containing protein compare
HMPREF1078_RS00905 -2.0 -2.7 TolC family protein compare
HMPREF1078_RS15575 -2.0 -4.0 glucosamine-6-phosphate deaminase compare
HMPREF1078_RS05510 -2.0 -1.4 gliding motility protein GldM compare
HMPREF1078_RS16115 -2.0 -1.4 hypothetical protein compare
HMPREF1078_RS04495 -2.0 -4.7 cytochrome d ubiquinol oxidase subunit II compare
HMPREF1078_RS07725 -2.0 -3.3 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1078_RS00100 -2.0 -5.2 thioredoxin-dependent thiol peroxidase compare
HMPREF1078_RS14210 -2.0 -1.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1078_RS04525 -2.0 -3.3 hypothetical protein compare
HMPREF1078_RS04710 -2.0 -8.1 DUF4954 family protein compare
HMPREF1078_RS19515 -1.9 -1.1 hypothetical protein compare
HMPREF1078_RS01370 -1.9 -4.3 alkaline phosphatase compare
HMPREF1078_RS00560 -1.9 -5.7 GtrA family protein compare
HMPREF1078_RS01165 -1.9 -2.6 agmatine deiminase family protein compare
HMPREF1078_RS06530 -1.9 -3.4 radical SAM protein compare
HMPREF1078_RS16720 -1.9 -2.6 DUF4783 domain-containing protein compare
HMPREF1078_RS05620 -1.9 -6.4 tetratricopeptide repeat protein compare
HMPREF1078_RS12675 -1.9 -3.4 NVEALA domain-containing protein compare
HMPREF1078_RS05495 -1.9 -2.3 type IX secretion system membrane protein PorP/SprF compare
HMPREF1078_RS07315 -1.9 -7.9 DegT/DnrJ/EryC1/StrS family aminotransferase compare
HMPREF1078_RS03425 -1.9 -1.3 acetate--CoA ligase compare
HMPREF1078_RS11260 -1.9 -1.8 OmpH family outer membrane protein compare
HMPREF1078_RS11565 -1.9 -4.4 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
HMPREF1078_RS07670 -1.9 -3.8 MATE family efflux transporter compare
HMPREF1078_RS13995 -1.9 -7.9 hypothetical protein compare
HMPREF1078_RS05515 -1.9 -3.9 gliding motility protein GldN compare
HMPREF1078_RS19910 -1.8 -1.6 UDP-2,3-diacylglucosamine diphosphatase compare
HMPREF1078_RS00890 -1.8 -4.7 hypothetical protein compare
HMPREF1078_RS10005 -1.8 -2.8 TonB-dependent receptor compare
HMPREF1078_RS00220 -1.8 -11.3 tetratricopeptide repeat protein compare
HMPREF1078_RS04785 -1.8 -3.0 nucleoside deaminase compare
HMPREF1078_RS12080 -1.8 -5.7 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1078_RS06175 -1.8 -1.2 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1078_RS00900 -1.8 -4.2 efflux RND transporter permease subunit compare
HMPREF1078_RS10640 -1.8 -5.7 XRE family transcriptional regulator compare
HMPREF1078_RS15335 -1.8 -3.4 acetylglutamate kinase compare
HMPREF1078_RS04520 -1.8 -1.2 hypothetical protein compare
HMPREF1078_RS15865 -1.8 -5.6 DUF5686 family protein compare
HMPREF1078_RS11215 -1.8 -3.4 HDIG domain-containing protein compare
HMPREF1078_RS04485 -1.8 -5.0 T9SS type A sorting domain-containing protein compare
HMPREF1078_RS11980 -1.8 -1.2 thiamine diphosphokinase compare
HMPREF1078_RS02145 -1.7 -7.1 serine hydroxymethyltransferase compare
HMPREF1078_RS15255 -1.7 -4.0 ribosome maturation factor RimM compare
HMPREF1078_RS03900 -1.7 -7.8 O-antigen ligase family protein compare
HMPREF1078_RS13315 -1.7 -1.2 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1078_RS05690 -1.7 -1.6 RNA polymerase sigma-70 factor compare
HMPREF1078_RS17255 -1.7 -7.1 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS09965 -1.7 -4.2 SPOR domain-containing protein compare
HMPREF1078_RS06840 -1.7 -5.5 polysaccharide deacetylase family protein compare
HMPREF1078_RS11040 -1.7 -6.4 zeta toxin family protein compare
HMPREF1078_RS03235 -1.7 -1.4 hypothetical protein compare
HMPREF1078_RS13045 -1.7 -6.3 porin family protein compare
HMPREF1078_RS10575 -1.7 -5.6 argininosuccinate synthase compare
HMPREF1078_RS04385 -1.7 -2.6 HU family DNA-binding protein compare
HMPREF1078_RS14540 -1.7 -7.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1078_RS02230 -1.7 -7.1 DUF5103 domain-containing protein compare
HMPREF1078_RS05890 -1.7 -4.5 SMP-30/gluconolactonase/LRE family protein compare
HMPREF1078_RS01365 -1.6 -4.9 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1078_RS04925 -1.6 -1.1 elongation factor P compare
HMPREF1078_RS10565 -1.6 -2.6 arginine repressor compare
HMPREF1078_RS09275 -1.6 -0.9 DUF3408 domain-containing protein compare
HMPREF1078_RS11275 -1.6 -1.1 DUF6089 family protein compare
HMPREF1078_RS06545 -1.6 -7.4 DUF4294 domain-containing protein compare


Specific Phenotypes

For 16 genes in this experiment

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono in Parabacteroides merdae CL09T00C40

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono across organisms