Experiment set3S428 for Parabacteroides merdae CL09T00C40

Compare to:

diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5

200 most important genes:

  gene name fitness t score description  
HMPREF1078_RS10475 -5.9 -14.2 glycosyltransferase family 4 protein compare
HMPREF1078_RS17480 -5.7 -11.6 glycosyltransferase compare
HMPREF1078_RS06805 -5.6 -3.9 phosphoribosylamine--glycine ligase compare
HMPREF1078_RS17495 -5.4 -20.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
HMPREF1078_RS10465 -5.3 -7.2 hypothetical protein compare
HMPREF1078_RS15255 -5.2 -3.6 ribosome maturation factor RimM compare
HMPREF1078_RS03090 -5.2 -3.6 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS10470 -5.2 -10.0 glycosyltransferase compare
HMPREF1078_RS00925 -5.1 -3.5 UpxY family transcription antiterminator compare
HMPREF1078_RS06740 -5.1 -4.9 DUF4271 domain-containing protein compare
HMPREF1078_RS17485 -5.0 -19.5 glycosyl transferase compare
HMPREF1078_RS05835 -4.9 -3.0 M20 family metallo-hydrolase compare
HMPREF1078_RS17490 -4.8 -15.2 FdtA/QdtA family cupin domain-containing protein compare
HMPREF1078_RS07755 -4.7 -3.2 outer membrane protein assembly factor BamD compare
HMPREF1078_RS05545 -4.7 -6.4 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1078_RS13545 -4.6 -4.5 diaminopimelate decarboxylase compare
HMPREF1078_RS04325 -4.6 -3.2 phosphoribosylformylglycinamidine synthase compare
HMPREF1078_RS12115 -4.5 -3.1 thioredoxin compare
HMPREF1078_RS16160 -4.5 -4.3 gliding motility lipoprotein GldH compare
HMPREF1078_RS13640 -4.4 -7.3 SDR family oxidoreductase compare
HMPREF1078_RS00195 -4.4 -22.7 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1078_RS11290 -4.2 -2.9 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1078_RS04110 -4.1 -4.0 hypothetical protein compare
HMPREF1078_RS11820 -4.1 -2.8 M28 family peptidase compare
HMPREF1078_RS14700 -4.0 -7.3 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1078_RS14685 -3.9 -6.0 aspartate 1-decarboxylase compare
HMPREF1078_RS17255 -3.9 -10.2 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS02175 -3.9 -3.8 patatin-like phospholipase family protein compare
HMPREF1078_RS10780 -3.9 -12.8 capsule assembly Wzi family protein compare
HMPREF1078_RS14945 -3.8 -3.7 DUF1282 family protein compare
HMPREF1078_RS17080 -3.7 -5.1 ATP-binding cassette domain-containing protein compare
HMPREF1078_RS04440 -3.7 -2.6 AAA family ATPase compare
HMPREF1078_RS00795 -3.6 -11.4 sigma-70 family RNA polymerase sigma factor compare
HMPREF1078_RS07310 -3.6 -4.7 methionine--tRNA ligase compare
HMPREF1078_RS02430 -3.6 -4.9 lipocalin-like domain-containing protein compare
HMPREF1078_RS13185 -3.6 -2.5 cytochrome c biogenesis protein CcdA compare
HMPREF1078_RS11430 -3.6 -2.4 iron ABC transporter permease compare
HMPREF1078_RS13635 -3.5 -9.9 mannonate dehydratase compare
HMPREF1078_RS17540 -3.5 -2.4 glycosyltransferase family 2 protein compare
HMPREF1078_RS12470 -3.5 -2.4 ABC transporter substrate-binding protein compare
HMPREF1078_RS05935 -3.5 -2.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1078_RS05615 -3.5 -12.0 glucuronate isomerase compare
HMPREF1078_RS17700 -3.5 -7.4 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS06560 -3.4 -16.9 two-component regulator propeller domain-containing protein compare
HMPREF1078_RS16130 -3.4 -4.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HMPREF1078_RS07780 -3.4 -2.3 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1078_RS13645 -3.4 -13.4 LacI family DNA-binding transcriptional regulator compare
HMPREF1078_RS12475 -3.4 -2.3 hypothetical protein compare
HMPREF1078_RS14085 -3.4 -2.3 lysophospholipid acyltransferase family protein compare
HMPREF1078_RS10745 -3.3 -10.2 MlaD family protein compare
HMPREF1078_RS04555 -3.3 -2.3 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS10120 -3.3 -3.2 glutamine-hydrolyzing GMP synthase compare
HMPREF1078_RS01870 -3.3 -4.4 phosphatase PAP2 family protein compare
HMPREF1078_RS15315 -3.3 -5.9 DUF4831 family protein compare
HMPREF1078_RS00680 -3.2 -10.7 glycoside hydrolase family 97 protein compare
HMPREF1078_RS04980 -3.2 -4.8 hypothetical protein compare
HMPREF1078_RS13270 -3.2 -2.2 ATP-binding protein compare
HMPREF1078_RS05870 -3.2 -3.1 PglZ domain-containing protein compare
HMPREF1078_RS04515 -3.2 -6.4 DUF1080 domain-containing protein compare
HMPREF1078_RS04840 -3.1 -10.8 type IX secretion system sortase PorU compare
HMPREF1078_RS15765 -3.1 -4.8 RNA polymerase sigma factor compare
HMPREF1078_RS04510 -3.1 -7.6 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS04710 -3.1 -12.6 DUF4954 family protein compare
HMPREF1078_RS04820 -3.1 -2.1 type IX secretion system outer membrane channel protein PorV compare
HMPREF1078_RS15325 -3.1 -2.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase compare
HMPREF1078_RS11310 -3.1 -2.1 polyketide cyclase compare
HMPREF1078_RS00060 -3.1 -1.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
HMPREF1078_RS12480 -3.1 -2.1 TonB-dependent receptor compare
HMPREF1078_RS08715 -3.0 -5.4 galactokinase compare
HMPREF1078_RS11105 -3.0 -4.1 type IX secretion system protein PorQ compare
HMPREF1078_RS00960 -3.0 -1.6 V-type ATP synthase subunit D compare
HMPREF1078_RS00970 -3.0 -3.6 hypothetical protein compare
HMPREF1078_RS05505 -3.0 -2.1 gliding motility protein GldL compare
HMPREF1078_RS07725 -3.0 -5.7 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1078_RS05500 -3.0 -2.9 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HMPREF1078_RS05515 -3.0 -4.1 gliding motility protein GldN compare
HMPREF1078_RS10005 -3.0 -4.5 TonB-dependent receptor compare
HMPREF1078_RS15845 -2.9 -6.2 copper homeostasis protein CutC compare
HMPREF1078_RS04655 -2.9 -2.0 penicillin-binding protein compare
HMPREF1078_RS15575 -2.9 -6.8 glucosamine-6-phosphate deaminase compare
HMPREF1078_RS10885 -2.9 -8.4 tyrosine recombinase XerC compare
HMPREF1078_RS08660 -2.9 -3.5 glycosyltransferase family 2 protein compare
HMPREF1078_RS12790 -2.9 -6.7 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1078_RS14540 -2.9 -13.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1078_RS15335 -2.9 -5.5 acetylglutamate kinase compare
HMPREF1078_RS17075 -2.9 -6.9 ABC transporter permease compare
HMPREF1078_RS08505 -2.9 -7.2 glycosyltransferase family 39 protein compare
HMPREF1078_RS14600 -2.9 -0.9 tRNA-Gly compare
HMPREF1078_RS05620 -2.9 -9.1 tetratricopeptide repeat protein compare
HMPREF1078_RS12625 -2.8 -14.5 hybrid sensor histidine kinase/response regulator transcription factor compare
HMPREF1078_RS07610 -2.8 -4.7 glycosyltransferase family 2 protein compare
HMPREF1078_RS14620 -2.8 -4.6 DNA replication and repair protein RecF compare
HMPREF1078_RS07775 -2.8 -1.9 twin-arginine translocase subunit TatC compare
HMPREF1078_RS14210 -2.8 -1.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1078_RS14200 -2.7 -2.6 shikimate dehydrogenase compare
HMPREF1078_RS05495 -2.7 -1.9 type IX secretion system membrane protein PorP/SprF compare
HMPREF1078_RS16115 -2.7 -2.6 hypothetical protein compare
HMPREF1078_RS17055 -2.7 -13.9 trigger factor compare
HMPREF1078_RS07185 -2.7 -12.6 DUF5672 family protein compare
HMPREF1078_RS06530 -2.7 -5.7 radical SAM protein compare
HMPREF1078_RS11260 -2.7 -2.6 OmpH family outer membrane protein compare
HMPREF1078_RS13995 -2.7 -13.3 hypothetical protein compare
HMPREF1078_RS02560 -2.7 -8.5 hypothetical protein compare
HMPREF1078_RS05510 -2.7 -1.8 gliding motility protein GldM compare
HMPREF1078_RS08705 -2.7 -8.1 aldose epimerase family protein compare
HMPREF1078_RS00950 -2.6 -8.9 V-type ATP synthase subunit A compare
HMPREF1078_RS13915 -2.6 -5.9 tetratricopeptide repeat protein compare
HMPREF1078_RS16875 -2.6 -4.0 type I methionyl aminopeptidase compare
HMPREF1078_RS13650 -2.6 -7.5 hypothetical protein compare
HMPREF1078_RS01450 -2.6 -8.7 cytochrome c biogenesis protein CcsA compare
HMPREF1078_RS04785 -2.5 -4.5 nucleoside deaminase compare
HMPREF1078_RS16730 -2.5 -7.0 acyltransferase compare
HMPREF1078_RS19650 -2.5 -1.8 hypothetical protein compare
HMPREF1078_RS07220 -2.5 -7.7 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1078_RS00090 -2.5 -7.8 GNAT family N-acetyltransferase compare
HMPREF1078_RS11980 -2.5 -1.7 thiamine diphosphokinase compare
HMPREF1078_RS16110 -2.5 -4.1 hypothetical protein compare
HMPREF1078_RS04355 -2.5 -2.9 hypothetical protein compare
HMPREF1078_RS13315 -2.5 -1.7 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1078_RS06175 -2.5 -1.7 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1078_RS00965 -2.5 -8.2 V-type ATPase 116kDa subunit family protein compare
HMPREF1078_RS09765 -2.4 -5.8 CinA family protein compare
HMPREF1078_RS02550 -2.4 -6.6 protein phosphatase 2C domain-containing protein compare
HMPREF1078_RS05840 -2.4 -9.4 lipopolysaccharide biosynthesis protein compare
HMPREF1078_RS05175 -2.4 -2.4 SDR family oxidoreductase compare
HMPREF1078_RS17475 -2.4 -12.9 nucleotide sugar dehydrogenase compare
HMPREF1078_RS08925 -2.4 -1.4 helix-turn-helix domain-containing protein compare
HMPREF1078_RS10580 -2.4 -7.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1078_RS18905 -2.4 -6.0 diacylglycerol kinase family protein compare
HMPREF1078_RS17750 -2.4 -8.2 long-chain fatty acid--CoA ligase compare
HMPREF1078_RS14535 -2.3 -11.8 DUF4837 family protein compare
HMPREF1078_RS00080 -2.3 -11.3 polysaccharide deacetylase family protein compare
HMPREF1078_RS06840 -2.3 -8.7 polysaccharide deacetylase family protein compare
HMPREF1078_RS06425 -2.3 -5.7 DUF4252 domain-containing protein compare
HMPREF1078_RS13430 -2.3 -8.2 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS13020 -2.3 -3.5 cell surface protein SprA compare
HMPREF1078_RS12450 -2.3 -7.4 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1078_RS10575 -2.3 -8.9 argininosuccinate synthase compare
HMPREF1078_RS07315 -2.3 -10.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
HMPREF1078_RS00025 -2.3 -7.4 Rossmann-like and DUF2520 domain-containing protein compare
HMPREF1078_RS13970 -2.3 -4.7 glucosaminidase domain-containing protein compare
HMPREF1078_RS00075 -2.3 -9.3 glycosyltransferase compare
HMPREF1078_RS15370 -2.2 -7.2 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1078_RS02390 -2.2 -1.6 tetratricopeptide repeat protein compare
HMPREF1078_RS06745 -2.2 -1.5 uroporphyrinogen-III synthase compare
HMPREF1078_RS15400 -2.2 -10.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1078_RS07215 -2.2 -7.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1078_RS04365 -2.2 -4.1 hypothetical protein compare
HMPREF1078_RS04925 -2.2 -1.5 elongation factor P compare
HMPREF1078_RS04700 -2.2 -5.9 type II 3-dehydroquinate dehydratase compare
HMPREF1078_RS00955 -2.2 -6.0 V-type ATP synthase subunit B compare
HMPREF1078_RS16345 -2.2 -14.2 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1078_RS13435 -2.2 -8.6 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HMPREF1078_RS11275 -2.2 -2.1 DUF6089 family protein compare
HMPREF1078_RS04435 -2.2 -4.5 ParB/RepB/Spo0J family partition protein compare
HMPREF1078_RS05280 -2.1 -3.7 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS12530 -2.1 -8.4 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1078_RS07165 -2.1 -2.5 glycosyltransferase family 9 protein compare
HMPREF1078_RS00095 -2.1 -8.5 recombinase RecA compare
HMPREF1078_RS13015 -2.1 -1.5 Holliday junction branch migration protein RuvA compare
HMPREF1078_RS16080 -2.1 -6.5 TrkA C-terminal domain-containing protein compare
HMPREF1078_RS11655 -2.1 -9.0 FprA family A-type flavoprotein compare
HMPREF1078_RS07205 -2.1 -3.4 shikimate kinase compare
HMPREF1078_RS16215 -2.1 -8.1 preprotein translocase subunit YajC compare
HMPREF1078_RS19665 -2.1 -1.1 helix-turn-helix domain-containing protein compare
HMPREF1078_RS13550 -2.1 -8.1 aspartate kinase compare
HMPREF1078_RS04405 -2.1 -5.8 M23 family metallopeptidase compare
HMPREF1078_RS07740 -2.1 -7.1 porin family protein compare
HMPREF1078_RS07850 -2.1 -8.5 AAA family ATPase compare
HMPREF1078_RS16315 -2.1 -9.1 GGGtGRT protein compare
HMPREF1078_RS07885 -2.1 -7.5 hypothetical protein compare
HMPREF1078_RS17460 -2.1 -11.3 glycosyltransferase family 4 protein compare
HMPREF1078_RS04705 -2.0 -3.8 site-specific tyrosine recombinase XerD compare
HMPREF1078_RS01120 -2.0 -8.6 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
HMPREF1078_RS07605 -2.0 -5.8 GNAT family N-acetyltransferase compare
HMPREF1078_RS17065 -2.0 -1.4 CPBP family intramembrane metalloprotease compare
HMPREF1078_RS12605 -2.0 -8.6 BamA/TamA family outer membrane protein compare
HMPREF1078_RS16340 -2.0 -14.0 SusC/RagA family TonB-linked outer membrane protein compare
HMPREF1078_RS05930 -2.0 -3.5 glycine cleavage system protein GcvH compare
HMPREF1078_RS14285 -2.0 -3.0 IMP dehydrogenase compare
HMPREF1078_RS07160 -2.0 -2.3 DUF4254 domain-containing protein compare
HMPREF1078_RS10160 -1.9 -1.9 OmpA family protein compare
HMPREF1078_RS12640 -1.9 -1.9 RluA family pseudouridine synthase compare
HMPREF1078_RS01125 -1.9 -8.7 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1078_RS16230 -1.9 -2.3 porin family protein compare
HMPREF1078_RS04370 -1.9 -1.0 30S ribosomal protein S1 compare
HMPREF1078_RS04685 -1.9 -1.1 30S ribosome-binding factor RbfA compare
HMPREF1078_RS04100 -1.9 -1.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
HMPREF1078_RS07320 -1.9 -9.4 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS09885 -1.9 -9.4 alpha amylase C-terminal domain-containing protein compare
HMPREF1078_RS11680 -1.9 -6.9 DUF1735 domain-containing protein compare
HMPREF1078_RS11005 -1.9 -12.0 tetratricopeptide repeat protein compare
HMPREF1078_RS02360 -1.9 -2.2 PHP domain-containing protein compare
HMPREF1078_RS11690 -1.9 -12.3 TonB-dependent receptor compare
HMPREF1078_RS02855 -1.9 -2.2 hypothetical protein compare
HMPREF1078_RS12725 -1.9 -4.3 DUF349 domain-containing protein compare
HMPREF1078_RS09965 -1.9 -6.8 SPOR domain-containing protein compare
HMPREF1078_RS14545 -1.8 -4.6 adenylyltransferase/cytidyltransferase family protein compare
HMPREF1078_RS16400 -1.8 -4.0 nitroreductase family protein compare
HMPREF1078_RS00070 -1.8 -9.0 glycosyltransferase compare


Specific Phenotypes

None in this experiment

For Parabacteroides merdae CL09T00C40 in mouse experiments

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono across organisms