Experiment set3S416 for Parabacteroides merdae CL09T00C40

Compare to:

diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4

200 most important genes:

  gene name fitness t score description  
HMPREF1078_RS10475 -6.3 -15.3 glycosyltransferase family 4 protein compare
HMPREF1078_RS06805 -6.2 -4.3 phosphoribosylamine--glycine ligase compare
HMPREF1078_RS17480 -5.9 -18.1 glycosyltransferase compare
HMPREF1078_RS03090 -5.7 -4.0 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS05545 -5.7 -4.0 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1078_RS06740 -5.6 -3.9 DUF4271 domain-containing protein compare
HMPREF1078_RS00925 -5.6 -3.9 UpxY family transcription antiterminator compare
HMPREF1078_RS10470 -5.6 -12.9 glycosyltransferase compare
HMPREF1078_RS10465 -5.5 -12.3 hypothetical protein compare
HMPREF1078_RS15255 -5.5 -5.3 ribosome maturation factor RimM compare
HMPREF1078_RS17490 -5.3 -16.6 FdtA/QdtA family cupin domain-containing protein compare
HMPREF1078_RS13545 -5.2 -3.6 diaminopimelate decarboxylase compare
HMPREF1078_RS07755 -5.2 -3.6 outer membrane protein assembly factor BamD compare
HMPREF1078_RS04325 -5.1 -3.5 phosphoribosylformylglycinamidine synthase compare
HMPREF1078_RS16160 -5.0 -3.5 gliding motility lipoprotein GldH compare
HMPREF1078_RS12115 -5.0 -3.5 thioredoxin compare
HMPREF1078_RS17495 -4.8 -28.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
HMPREF1078_RS14685 -4.7 -4.6 aspartate 1-decarboxylase compare
HMPREF1078_RS04110 -4.7 -4.6 hypothetical protein compare
HMPREF1078_RS11820 -4.6 -3.2 M28 family peptidase compare
HMPREF1078_RS05835 -4.5 -3.1 M20 family metallo-hydrolase compare
HMPREF1078_RS14700 -4.4 -9.9 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1078_RS11290 -4.4 -5.2 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1078_RS17485 -4.3 -21.9 glycosyl transferase compare
HMPREF1078_RS00195 -4.2 -19.9 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1078_RS17540 -4.1 -2.8 glycosyltransferase family 2 protein compare
HMPREF1078_RS13185 -4.1 -2.8 cytochrome c biogenesis protein CcdA compare
HMPREF1078_RS05935 -4.1 -2.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1078_RS12470 -4.0 -2.8 ABC transporter substrate-binding protein compare
HMPREF1078_RS11430 -4.0 -2.8 iron ABC transporter permease compare
HMPREF1078_RS02175 -3.9 -8.8 patatin-like phospholipase family protein compare
HMPREF1078_RS04365 -3.9 -4.6 hypothetical protein compare
HMPREF1078_RS07780 -3.9 -2.7 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1078_RS12475 -3.9 -2.7 hypothetical protein compare
HMPREF1078_RS04555 -3.9 -2.7 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS00940 -3.8 -3.7 hypothetical protein compare
HMPREF1078_RS05870 -3.8 -2.6 PglZ domain-containing protein compare
HMPREF1078_RS17255 -3.7 -14.7 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS15315 -3.7 -7.0 DUF4831 family protein compare
HMPREF1078_RS14085 -3.7 -3.5 lysophospholipid acyltransferase family protein compare
HMPREF1078_RS10780 -3.7 -17.1 capsule assembly Wzi family protein compare
HMPREF1078_RS04820 -3.6 -2.5 type IX secretion system outer membrane channel protein PorV compare
HMPREF1078_RS06560 -3.6 -21.5 two-component regulator propeller domain-containing protein compare
HMPREF1078_RS15325 -3.6 -2.5 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase compare
HMPREF1078_RS00060 -3.6 -2.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
HMPREF1078_RS13270 -3.6 -3.5 ATP-binding protein compare
HMPREF1078_RS05515 -3.6 -4.3 gliding motility protein GldN compare
HMPREF1078_RS10120 -3.6 -4.9 glutamine-hydrolyzing GMP synthase compare
HMPREF1078_RS12480 -3.6 -2.5 TonB-dependent receptor compare
HMPREF1078_RS05505 -3.5 -2.4 gliding motility protein GldL compare
HMPREF1078_RS17700 -3.5 -10.1 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS17080 -3.5 -7.4 ATP-binding cassette domain-containing protein compare
HMPREF1078_RS10745 -3.5 -12.2 MlaD family protein compare
HMPREF1078_RS04440 -3.5 -4.7 AAA family ATPase compare
HMPREF1078_RS04655 -3.5 -2.4 penicillin-binding protein compare
HMPREF1078_RS14945 -3.5 -6.1 DUF1282 family protein compare
HMPREF1078_RS07310 -3.5 -4.9 methionine--tRNA ligase compare
HMPREF1078_RS05500 -3.4 -6.1 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HMPREF1078_RS10005 -3.4 -6.5 TonB-dependent receptor compare
HMPREF1078_RS04510 -3.4 -9.9 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS04840 -3.4 -13.8 type IX secretion system sortase PorU compare
HMPREF1078_RS14210 -3.3 -2.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1078_RS07775 -3.3 -2.3 twin-arginine translocase subunit TatC compare
HMPREF1078_RS13640 -3.3 -10.0 SDR family oxidoreductase compare
HMPREF1078_RS05495 -3.3 -2.3 type IX secretion system membrane protein PorP/SprF compare
HMPREF1078_RS11105 -3.3 -5.4 type IX secretion system protein PorQ compare
HMPREF1078_RS16875 -3.3 -5.0 type I methionyl aminopeptidase compare
HMPREF1078_RS11310 -3.3 -3.1 polyketide cyclase compare
HMPREF1078_RS17075 -3.2 -8.5 ABC transporter permease compare
HMPREF1078_RS14200 -3.2 -3.1 shikimate dehydrogenase compare
HMPREF1078_RS01870 -3.2 -6.1 phosphatase PAP2 family protein compare
HMPREF1078_RS05510 -3.2 -3.1 gliding motility protein GldM compare
HMPREF1078_RS15765 -3.2 -8.1 RNA polymerase sigma factor compare
HMPREF1078_RS08715 -3.1 -7.5 galactokinase compare
HMPREF1078_RS08505 -3.1 -10.1 glycosyltransferase family 39 protein compare
HMPREF1078_RS10885 -3.1 -10.2 tyrosine recombinase XerC compare
HMPREF1078_RS04355 -3.1 -3.0 hypothetical protein compare
HMPREF1078_RS06425 -3.1 -6.2 DUF4252 domain-containing protein compare
HMPREF1078_RS07205 -3.1 -4.1 shikimate kinase compare
HMPREF1078_RS06175 -3.1 -2.1 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1078_RS05620 -3.0 -12.6 tetratricopeptide repeat protein compare
HMPREF1078_RS13315 -3.0 -2.1 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1078_RS13995 -3.0 -15.5 hypothetical protein compare
HMPREF1078_RS11980 -3.0 -2.1 thiamine diphosphokinase compare
HMPREF1078_RS06530 -3.0 -6.2 radical SAM protein compare
HMPREF1078_RS13635 -3.0 -12.1 mannonate dehydratase compare
HMPREF1078_RS15335 -3.0 -6.8 acetylglutamate kinase compare
HMPREF1078_RS11260 -2.9 -4.9 OmpH family outer membrane protein compare
HMPREF1078_RS07725 -2.9 -8.3 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1078_RS15575 -2.9 -8.8 glucosamine-6-phosphate deaminase compare
HMPREF1078_RS17380 -2.9 -2.0 ABC transporter ATP-binding protein compare
HMPREF1078_RS17750 -2.9 -9.9 long-chain fatty acid--CoA ligase compare
HMPREF1078_RS19900 -2.9 -0.9 AraC family ligand binding domain-containing protein compare
HMPREF1078_RS04710 -2.9 -13.7 DUF4954 family protein compare
HMPREF1078_RS02430 -2.9 -6.8 lipocalin-like domain-containing protein compare
HMPREF1078_RS14540 -2.8 -15.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1078_RS11275 -2.8 -1.9 DUF6089 family protein compare
HMPREF1078_RS13915 -2.8 -8.0 tetratricopeptide repeat protein compare
HMPREF1078_RS06745 -2.8 -1.9 uroporphyrinogen-III synthase compare
HMPREF1078_RS15845 -2.8 -7.2 copper homeostasis protein CutC compare
HMPREF1078_RS13020 -2.8 -8.2 cell surface protein SprA compare
HMPREF1078_RS10275 -2.8 -1.9 biopolymer transporter ExbD compare
HMPREF1078_RS16115 -2.8 -4.5 hypothetical protein compare
HMPREF1078_RS16130 -2.8 -6.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HMPREF1078_RS04925 -2.8 -1.9 elongation factor P compare
HMPREF1078_RS14620 -2.8 -6.0 DNA replication and repair protein RecF compare
HMPREF1078_RS08660 -2.7 -5.2 glycosyltransferase family 2 protein compare
HMPREF1078_RS13435 -2.7 -11.2 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HMPREF1078_RS05175 -2.7 -4.5 SDR family oxidoreductase compare
HMPREF1078_RS10580 -2.7 -9.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1078_RS07165 -2.7 -3.2 glycosyltransferase family 9 protein compare
HMPREF1078_RS13015 -2.7 -1.8 Holliday junction branch migration protein RuvA compare
HMPREF1078_RS04705 -2.7 -4.0 site-specific tyrosine recombinase XerD compare
HMPREF1078_RS07160 -2.7 -1.8 DUF4254 domain-containing protein compare
HMPREF1078_RS02390 -2.6 -4.0 tetratricopeptide repeat protein compare
HMPREF1078_RS04515 -2.6 -8.8 DUF1080 domain-containing protein compare
HMPREF1078_RS00680 -2.6 -13.4 glycoside hydrolase family 97 protein compare
HMPREF1078_RS04980 -2.6 -4.9 hypothetical protein compare
HMPREF1078_RS00090 -2.6 -7.9 GNAT family N-acetyltransferase compare
HMPREF1078_RS00795 -2.5 -10.1 sigma-70 family RNA polymerase sigma factor compare
HMPREF1078_RS13645 -2.5 -12.1 LacI family DNA-binding transcriptional regulator compare
HMPREF1078_RS04435 -2.5 -4.8 ParB/RepB/Spo0J family partition protein compare
HMPREF1078_RS12625 -2.5 -15.4 hybrid sensor histidine kinase/response regulator transcription factor compare
HMPREF1078_RS14285 -2.5 -3.8 IMP dehydrogenase compare
HMPREF1078_RS04100 -2.5 -1.6 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
HMPREF1078_RS16110 -2.5 -6.1 hypothetical protein compare
HMPREF1078_RS05615 -2.5 -9.6 glucuronate isomerase compare
HMPREF1078_RS13690 -2.5 -6.4 3'-5' exonuclease compare
HMPREF1078_RS00095 -2.5 -10.3 recombinase RecA compare
HMPREF1078_RS10160 -2.5 -1.7 OmpA family protein compare
HMPREF1078_RS15370 -2.5 -9.4 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1078_RS04370 -2.5 -1.3 30S ribosomal protein S1 compare
HMPREF1078_RS12450 -2.4 -9.5 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1078_RS12790 -2.4 -9.5 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1078_RS02560 -2.4 -9.8 hypothetical protein compare
HMPREF1078_RS04700 -2.4 -7.2 type II 3-dehydroquinate dehydratase compare
HMPREF1078_RS07185 -2.4 -13.0 DUF5672 family protein compare
HMPREF1078_RS08705 -2.3 -9.1 aldose epimerase family protein compare
HMPREF1078_RS14555 -2.3 -3.1 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1078_RS11655 -2.3 -11.0 FprA family A-type flavoprotein compare
HMPREF1078_RS17065 -2.3 -3.5 CPBP family intramembrane metalloprotease compare
HMPREF1078_RS17055 -2.3 -13.7 trigger factor compare
HMPREF1078_RS17005 -2.3 -1.6 DNA mismatch repair endonuclease MutL compare
HMPREF1078_RS13110 -2.3 -1.5 gamma carbonic anhydrase family protein compare
HMPREF1078_RS07175 -2.3 -1.6 lipopolysaccharide kinase InaA family protein compare
HMPREF1078_RS04520 -2.3 -5.8 hypothetical protein compare
HMPREF1078_RS07615 -2.3 -6.3 recombination mediator RecR compare
HMPREF1078_RS14505 -2.3 -13.2 hypothetical protein compare
HMPREF1078_RS16230 -2.3 -4.3 porin family protein compare
HMPREF1078_RS00950 -2.2 -11.8 V-type ATP synthase subunit A compare
HMPREF1078_RS13430 -2.2 -8.1 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS09625 -2.2 -1.3 tRNA-Leu compare
HMPREF1078_RS00955 -2.2 -7.0 V-type ATP synthase subunit B compare
HMPREF1078_RS10270 -2.2 -3.6 MotA/TolQ/ExbB proton channel family protein compare
HMPREF1078_RS00970 -2.2 -5.8 hypothetical protein compare
HMPREF1078_RS16710 -2.2 -2.9 chorismate synthase compare
HMPREF1078_RS09765 -2.1 -5.2 CinA family protein compare
HMPREF1078_RS13930 -2.1 -3.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HMPREF1078_RS16655 -2.1 -2.4 3-isopropylmalate dehydratase small subunit compare
HMPREF1078_RS12605 -2.1 -9.2 BamA/TamA family outer membrane protein compare
HMPREF1078_RS16790 -2.1 -3.5 S9 family peptidase compare
HMPREF1078_RS01120 -2.1 -10.6 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
HMPREF1078_RS13970 -2.1 -5.4 glucosaminidase domain-containing protein compare
HMPREF1078_RS05160 -2.1 -7.7 mannose-1-phosphate guanylyltransferase compare
HMPREF1078_RS01385 -2.1 -1.7 LemA family protein compare
HMPREF1078_RS01450 -2.1 -9.3 cytochrome c biogenesis protein CcsA compare
HMPREF1078_RS15400 -2.1 -9.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1078_RS00965 -2.1 -10.0 V-type ATPase 116kDa subunit family protein compare
HMPREF1078_RS16340 -2.1 -15.2 SusC/RagA family TonB-linked outer membrane protein compare
HMPREF1078_RS15105 -2.1 -1.4 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1078_RS04660 -2.0 -0.8 FtsL-like putative cell division protein compare
HMPREF1078_RS07610 -2.0 -6.2 glycosyltransferase family 2 protein compare
HMPREF1078_RS07220 -2.0 -8.6 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1078_RS11135 -2.0 -1.4 hypothetical protein compare
HMPREF1078_RS05485 -2.0 -3.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1078_RS07885 -2.0 -8.8 hypothetical protein compare
HMPREF1078_RS14535 -2.0 -9.4 DUF4837 family protein compare
HMPREF1078_RS12530 -2.0 -8.5 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1078_RS14680 -2.0 -1.4 pantoate--beta-alanine ligase compare
HMPREF1078_RS00030 -2.0 -7.0 HAD-IIIA family hydrolase compare
HMPREF1078_RS02865 -2.0 -2.6 hypothetical protein compare
HMPREF1078_RS16315 -2.0 -10.2 GGGtGRT protein compare
HMPREF1078_RS07315 -2.0 -8.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
HMPREF1078_RS08405 -2.0 -1.7 DUF2148 domain-containing protein compare
HMPREF1078_RS16730 -1.9 -4.9 acyltransferase compare
HMPREF1078_RS00080 -1.9 -11.0 polysaccharide deacetylase family protein compare
HMPREF1078_RS00295 -1.9 -3.6 50S ribosomal protein L35 compare
HMPREF1078_RS00945 -1.9 -5.9 DUF2764 domain-containing protein compare
HMPREF1078_RS13175 -1.9 -1.3 hypothetical protein compare
HMPREF1078_RS08875 -1.9 -1.8 DUF1896 family protein compare
HMPREF1078_RS17475 -1.9 -10.8 nucleotide sugar dehydrogenase compare
HMPREF1078_RS00070 -1.9 -9.2 glycosyltransferase compare
HMPREF1078_RS04390 -1.9 -2.9 tRNA-Pro compare
HMPREF1078_RS13550 -1.9 -7.3 aspartate kinase compare
HMPREF1078_RS17145 -1.9 -1.3 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1078_RS17460 -1.9 -10.7 glycosyltransferase family 4 protein compare
HMPREF1078_RS12600 -1.9 -8.5 translocation/assembly module TamB domain-containing protein compare
HMPREF1078_RS16215 -1.9 -7.6 preprotein translocase subunit YajC compare
HMPREF1078_RS16335 -1.9 -14.8 hybrid sensor histidine kinase/response regulator transcription factor compare
HMPREF1078_RS00025 -1.8 -8.2 Rossmann-like and DUF2520 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Parabacteroides merdae CL09T00C40 in mouse experiments

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono across organisms