Experiment set3S415 for Parabacteroides merdae CL09T00C40

Compare to:

diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

200 most important genes:

  gene name fitness t score description  
HMPREF1078_RS06805 -6.3 -4.4 phosphoribosylamine--glycine ligase compare
HMPREF1078_RS03090 -5.8 -4.0 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS06740 -5.8 -4.0 DUF4271 domain-containing protein compare
HMPREF1078_RS10475 -5.7 -24.5 glycosyltransferase family 4 protein compare
HMPREF1078_RS15255 -5.6 -5.4 ribosome maturation factor RimM compare
HMPREF1078_RS00925 -5.5 -6.6 UpxY family transcription antiterminator compare
HMPREF1078_RS05545 -5.5 -6.5 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1078_RS10470 -5.5 -16.8 glycosyltransferase compare
HMPREF1078_RS13545 -5.4 -3.7 diaminopimelate decarboxylase compare
HMPREF1078_RS04325 -5.3 -3.7 phosphoribosylformylglycinamidine synthase compare
HMPREF1078_RS07755 -5.3 -3.6 outer membrane protein assembly factor BamD compare
HMPREF1078_RS10465 -5.3 -16.8 hypothetical protein compare
HMPREF1078_RS17480 -5.2 -22.6 glycosyltransferase compare
HMPREF1078_RS12115 -5.2 -3.6 thioredoxin compare
HMPREF1078_RS16160 -5.2 -3.6 gliding motility lipoprotein GldH compare
HMPREF1078_RS14685 -5.1 -3.5 aspartate 1-decarboxylase compare
HMPREF1078_RS04110 -4.9 -3.4 hypothetical protein compare
HMPREF1078_RS17490 -4.9 -17.6 FdtA/QdtA family cupin domain-containing protein compare
HMPREF1078_RS11820 -4.8 -3.3 M28 family peptidase compare
HMPREF1078_RS14700 -4.8 -7.3 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1078_RS11290 -4.7 -4.6 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1078_RS04685 -4.7 -1.6 30S ribosome-binding factor RbfA compare
HMPREF1078_RS14945 -4.7 -3.2 DUF1282 family protein compare
HMPREF1078_RS13640 -4.6 -9.3 SDR family oxidoreductase compare
HMPREF1078_RS17485 -4.5 -25.5 glycosyl transferase compare
HMPREF1078_RS17495 -4.4 -28.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
HMPREF1078_RS17540 -4.2 -2.9 glycosyltransferase family 2 protein compare
HMPREF1078_RS11430 -4.2 -2.9 iron ABC transporter permease compare
HMPREF1078_RS12470 -4.2 -2.9 ABC transporter substrate-binding protein compare
HMPREF1078_RS05935 -4.2 -2.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1078_RS15450 -4.1 -1.4 Fe-S cluster domain-containing protein compare
HMPREF1078_RS13185 -4.1 -4.9 cytochrome c biogenesis protein CcdA compare
HMPREF1078_RS14085 -4.1 -2.8 lysophospholipid acyltransferase family protein compare
HMPREF1078_RS12475 -4.1 -2.8 hypothetical protein compare
HMPREF1078_RS04555 -4.1 -2.8 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS07780 -4.0 -2.8 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1078_RS07205 -4.0 -2.8 shikimate kinase compare
HMPREF1078_RS05870 -4.0 -2.8 PglZ domain-containing protein compare
HMPREF1078_RS04510 -4.0 -8.4 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS15845 -3.9 -7.0 copper homeostasis protein CutC compare
HMPREF1078_RS13270 -3.9 -2.7 ATP-binding protein compare
HMPREF1078_RS04820 -3.9 -2.7 type IX secretion system outer membrane channel protein PorV compare
HMPREF1078_RS06560 -3.8 -21.5 two-component regulator propeller domain-containing protein compare
HMPREF1078_RS02175 -3.8 -11.0 patatin-like phospholipase family protein compare
HMPREF1078_RS15325 -3.8 -2.6 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase compare
HMPREF1078_RS11310 -3.8 -2.6 polyketide cyclase compare
HMPREF1078_RS12480 -3.8 -2.6 TonB-dependent receptor compare
HMPREF1078_RS05500 -3.8 -2.6 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HMPREF1078_RS05505 -3.7 -2.6 gliding motility protein GldL compare
HMPREF1078_RS00960 -3.7 -2.1 V-type ATP synthase subunit D compare
HMPREF1078_RS04655 -3.7 -2.5 penicillin-binding protein compare
HMPREF1078_RS05515 -3.7 -5.0 gliding motility protein GldN compare
HMPREF1078_RS10745 -3.6 -12.6 MlaD family protein compare
HMPREF1078_RS16875 -3.6 -2.5 type I methionyl aminopeptidase compare
HMPREF1078_RS15765 -3.6 -6.0 RNA polymerase sigma factor compare
HMPREF1078_RS04840 -3.6 -14.1 type IX secretion system sortase PorU compare
HMPREF1078_RS11105 -3.5 -4.2 type IX secretion system protein PorQ compare
HMPREF1078_RS14210 -3.5 -2.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1078_RS13995 -3.5 -16.6 hypothetical protein compare
HMPREF1078_RS15575 -3.5 -7.8 glucosamine-6-phosphate deaminase compare
HMPREF1078_RS05495 -3.5 -2.4 type IX secretion system membrane protein PorP/SprF compare
HMPREF1078_RS10005 -3.5 -6.2 TonB-dependent receptor compare
HMPREF1078_RS10780 -3.4 -18.1 capsule assembly Wzi family protein compare
HMPREF1078_RS04440 -3.4 -5.6 AAA family ATPase compare
HMPREF1078_RS05510 -3.4 -2.4 gliding motility protein GldM compare
HMPREF1078_RS01870 -3.4 -5.6 phosphatase PAP2 family protein compare
HMPREF1078_RS10885 -3.4 -10.8 tyrosine recombinase XerC compare
HMPREF1078_RS11260 -3.4 -3.3 OmpH family outer membrane protein compare
HMPREF1078_RS04710 -3.4 -15.0 DUF4954 family protein compare
HMPREF1078_RS05620 -3.4 -12.3 tetratricopeptide repeat protein compare
HMPREF1078_RS05115 -3.3 -2.2 helix-turn-helix domain-containing protein compare
HMPREF1078_RS02430 -3.3 -6.3 lipocalin-like domain-containing protein compare
HMPREF1078_RS07775 -3.3 -3.9 twin-arginine translocase subunit TatC compare
HMPREF1078_RS04980 -3.3 -5.9 hypothetical protein compare
HMPREF1078_RS10120 -3.3 -6.2 glutamine-hydrolyzing GMP synthase compare
HMPREF1078_RS08660 -3.3 -5.4 glycosyltransferase family 2 protein compare
HMPREF1078_RS04365 -3.3 -4.5 hypothetical protein compare
HMPREF1078_RS00195 -3.3 -16.4 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1078_RS13315 -3.3 -2.2 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1078_RS06175 -3.2 -2.2 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1078_RS16130 -3.2 -8.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HMPREF1078_RS06530 -3.2 -6.8 radical SAM protein compare
HMPREF1078_RS16115 -3.2 -3.8 hypothetical protein compare
HMPREF1078_RS11980 -3.2 -2.2 thiamine diphosphokinase compare
HMPREF1078_RS08715 -3.2 -7.7 galactokinase compare
HMPREF1078_RS19705 -3.2 -2.7 hypothetical protein compare
HMPREF1078_RS04405 -3.2 -7.7 M23 family metallopeptidase compare
HMPREF1078_RS17080 -3.1 -7.7 ATP-binding cassette domain-containing protein compare
HMPREF1078_RS15315 -3.1 -10.9 DUF4831 family protein compare
HMPREF1078_RS14200 -3.1 -3.6 shikimate dehydrogenase compare
HMPREF1078_RS10435 -3.1 -1.5 tRNA-Thr compare
HMPREF1078_RS11275 -3.1 -2.1 DUF6089 family protein compare
HMPREF1078_RS13020 -3.0 -6.5 cell surface protein SprA compare
HMPREF1078_RS02855 -3.0 -2.9 hypothetical protein compare
HMPREF1078_RS08505 -3.0 -10.4 glycosyltransferase family 39 protein compare
HMPREF1078_RS04925 -3.0 -2.1 elongation factor P compare
HMPREF1078_RS04515 -3.0 -8.7 DUF1080 domain-containing protein compare
HMPREF1078_RS06745 -3.0 -2.1 uroporphyrinogen-III synthase compare
HMPREF1078_RS17255 -3.0 -14.5 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS00795 -3.0 -11.6 sigma-70 family RNA polymerase sigma factor compare
HMPREF1078_RS05615 -3.0 -11.5 glucuronate isomerase compare
HMPREF1078_RS13915 -3.0 -8.6 tetratricopeptide repeat protein compare
HMPREF1078_RS07165 -2.9 -2.8 glycosyltransferase family 9 protein compare
HMPREF1078_RS00095 -2.9 -10.2 recombinase RecA compare
HMPREF1078_RS13015 -2.9 -2.0 Holliday junction branch migration protein RuvA compare
HMPREF1078_RS04355 -2.9 -5.1 hypothetical protein compare
HMPREF1078_RS07160 -2.9 -2.0 DUF4254 domain-containing protein compare
HMPREF1078_RS02390 -2.8 -3.9 tetratricopeptide repeat protein compare
HMPREF1078_RS14540 -2.8 -13.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1078_RS13635 -2.8 -12.1 mannonate dehydratase compare
HMPREF1078_RS00060 -2.8 -1.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
HMPREF1078_RS06425 -2.8 -7.5 DUF4252 domain-containing protein compare
HMPREF1078_RS17075 -2.7 -8.7 ABC transporter permease compare
HMPREF1078_RS16110 -2.7 -6.0 hypothetical protein compare
HMPREF1078_RS04705 -2.7 -4.8 site-specific tyrosine recombinase XerD compare
HMPREF1078_RS04370 -2.7 -1.5 30S ribosomal protein S1 compare
HMPREF1078_RS17700 -2.7 -10.7 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS07215 -2.7 -9.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1078_RS05835 -2.7 -2.5 M20 family metallo-hydrolase compare
HMPREF1078_RS13645 -2.7 -12.8 LacI family DNA-binding transcriptional regulator compare
HMPREF1078_RS15335 -2.6 -7.0 acetylglutamate kinase compare
HMPREF1078_RS14555 -2.6 -2.5 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1078_RS14285 -2.6 -3.9 IMP dehydrogenase compare
HMPREF1078_RS06840 -2.6 -10.6 polysaccharide deacetylase family protein compare
HMPREF1078_RS10160 -2.6 -3.1 OmpA family protein compare
HMPREF1078_RS08705 -2.6 -9.3 aldose epimerase family protein compare
HMPREF1078_RS07610 -2.6 -6.7 glycosyltransferase family 2 protein compare
HMPREF1078_RS02145 -2.6 -12.3 serine hydroxymethyltransferase compare
HMPREF1078_RS04435 -2.5 -5.5 ParB/RepB/Spo0J family partition protein compare
HMPREF1078_RS16230 -2.5 -3.8 porin family protein compare
HMPREF1078_RS01450 -2.5 -9.4 cytochrome c biogenesis protein CcsA compare
HMPREF1078_RS13110 -2.5 -1.7 gamma carbonic anhydrase family protein compare
HMPREF1078_RS07175 -2.5 -1.7 lipopolysaccharide kinase InaA family protein compare
HMPREF1078_RS07185 -2.5 -13.7 DUF5672 family protein compare
HMPREF1078_RS01700 -2.5 -5.4 adenylyl-sulfate kinase compare
HMPREF1078_RS16730 -2.5 -7.0 acyltransferase compare
HMPREF1078_RS16710 -2.5 -1.7 chorismate synthase compare
HMPREF1078_RS17065 -2.4 -3.3 CPBP family intramembrane metalloprotease compare
HMPREF1078_RS12450 -2.4 -10.0 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1078_RS17005 -2.4 -1.7 DNA mismatch repair endonuclease MutL compare
HMPREF1078_RS13930 -2.4 -3.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HMPREF1078_RS12790 -2.4 -9.9 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1078_RS10580 -2.4 -9.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1078_RS13435 -2.4 -8.8 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HMPREF1078_RS07885 -2.4 -9.4 hypothetical protein compare
HMPREF1078_RS11655 -2.4 -10.5 FprA family A-type flavoprotein compare
HMPREF1078_RS17055 -2.4 -13.5 trigger factor compare
HMPREF1078_RS07705 -2.4 -9.4 sugar transferase compare
HMPREF1078_RS14535 -2.3 -10.6 DUF4837 family protein compare
HMPREF1078_RS00945 -2.3 -6.1 DUF2764 domain-containing protein compare
HMPREF1078_RS04520 -2.3 -6.5 hypothetical protein compare
HMPREF1078_RS02990 -2.3 -3.1 hypothetical protein compare
HMPREF1078_RS12625 -2.3 -14.2 hybrid sensor histidine kinase/response regulator transcription factor compare
HMPREF1078_RS04100 -2.3 -1.3 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
HMPREF1078_RS07725 -2.3 -8.4 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1078_RS00680 -2.3 -12.3 glycoside hydrolase family 97 protein compare
HMPREF1078_RS05175 -2.3 -4.8 SDR family oxidoreductase compare
HMPREF1078_RS16340 -2.3 -16.1 SusC/RagA family TonB-linked outer membrane protein compare
HMPREF1078_RS11135 -2.3 -1.5 hypothetical protein compare
HMPREF1078_RS04700 -2.3 -7.2 type II 3-dehydroquinate dehydratase compare
HMPREF1078_RS13690 -2.3 -6.5 3'-5' exonuclease compare
HMPREF1078_RS09885 -2.3 -11.6 alpha amylase C-terminal domain-containing protein compare
HMPREF1078_RS07220 -2.3 -9.1 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1078_RS00070 -2.3 -11.1 glycosyltransferase compare
HMPREF1078_RS00090 -2.3 -7.9 GNAT family N-acetyltransferase compare
HMPREF1078_RS04660 -2.2 -0.9 FtsL-like putative cell division protein compare
HMPREF1078_RS14620 -2.2 -6.4 DNA replication and repair protein RecF compare
HMPREF1078_RS17750 -2.2 -10.5 long-chain fatty acid--CoA ligase compare
HMPREF1078_RS14680 -2.2 -1.5 pantoate--beta-alanine ligase compare
HMPREF1078_RS10440 -2.2 -5.5 DUF4199 domain-containing protein compare
HMPREF1078_RS15405 -2.2 -5.0 NAD(P)-dependent oxidoreductase compare
HMPREF1078_RS01170 -2.2 -2.9 carbon-nitrogen hydrolase compare
HMPREF1078_RS09625 -2.2 -1.3 tRNA-Leu compare
HMPREF1078_RS16400 -2.2 -5.2 nitroreductase family protein compare
HMPREF1078_RS13235 -2.2 -2.0 tRNA-Thr compare
HMPREF1078_RS15460 -2.2 -6.7 DUF3078 domain-containing protein compare
HMPREF1078_RS00080 -2.2 -12.1 polysaccharide deacetylase family protein compare
HMPREF1078_RS13175 -2.2 -1.5 hypothetical protein compare
HMPREF1078_RS04935 -2.1 -4.1 iron-sulfur cluster assembly protein compare
HMPREF1078_RS16215 -2.1 -9.0 preprotein translocase subunit YajC compare
HMPREF1078_RS05930 -2.1 -4.7 glycine cleavage system protein GcvH compare
HMPREF1078_RS13430 -2.1 -9.2 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS05840 -2.1 -10.7 lipopolysaccharide biosynthesis protein compare
HMPREF1078_RS04805 -2.1 -1.5 UvrD-helicase domain-containing protein compare
HMPREF1078_RS12605 -2.1 -9.4 BamA/TamA family outer membrane protein compare
HMPREF1078_RS07315 -2.1 -9.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
HMPREF1078_RS18645 -2.1 -1.0 transposase compare
HMPREF1078_RS16345 -2.1 -12.7 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1078_RS13050 -2.1 -1.4 primosomal protein N' compare
HMPREF1078_RS00025 -2.1 -8.4 Rossmann-like and DUF2520 domain-containing protein compare
HMPREF1078_RS16080 -2.0 -7.0 TrkA C-terminal domain-containing protein compare
HMPREF1078_RS05885 -2.0 -2.8 ribonuclease R compare
HMPREF1078_RS10265 -2.0 -5.6 pyridoxine 5'-phosphate synthase compare
HMPREF1078_RS15400 -2.0 -9.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1078_RS05485 -2.0 -4.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1078_RS16335 -2.0 -15.3 hybrid sensor histidine kinase/response regulator transcription factor compare
HMPREF1078_RS05280 -2.0 -3.8 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS00965 -2.0 -9.9 V-type ATPase 116kDa subunit family protein compare
HMPREF1078_RS00950 -2.0 -11.1 V-type ATP synthase subunit A compare
HMPREF1078_RS19485 -2.0 -1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Parabacteroides merdae CL09T00C40 in mouse experiments

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono across organisms