Experiment set3S403 for Parabacteroides merdae CL09T00C40

Compare to:

diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3

200 most important genes:

  gene name fitness t score description  
HMPREF1078_RS06805 -6.6 -4.6 phosphoribosylamine--glycine ligase compare
HMPREF1078_RS03090 -6.2 -4.3 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS15255 -6.2 -4.3 ribosome maturation factor RimM compare
HMPREF1078_RS00925 -6.2 -4.3 UpxY family transcription antiterminator compare
HMPREF1078_RS06740 -6.1 -4.2 DUF4271 domain-containing protein compare
HMPREF1078_RS05545 -5.9 -5.8 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1078_RS05835 -5.9 -3.8 M20 family metallo-hydrolase compare
HMPREF1078_RS13545 -5.8 -4.0 diaminopimelate decarboxylase compare
HMPREF1078_RS10475 -5.8 -27.6 glycosyltransferase family 4 protein compare
HMPREF1078_RS07755 -5.7 -3.9 outer membrane protein assembly factor BamD compare
HMPREF1078_RS10465 -5.6 -17.4 hypothetical protein compare
HMPREF1078_RS10470 -5.6 -20.2 glycosyltransferase compare
HMPREF1078_RS04325 -5.6 -3.9 phosphoribosylformylglycinamidine synthase compare
HMPREF1078_RS12115 -5.5 -3.8 thioredoxin compare
HMPREF1078_RS16160 -5.5 -3.8 gliding motility lipoprotein GldH compare
HMPREF1078_RS14685 -5.2 -5.1 aspartate 1-decarboxylase compare
HMPREF1078_RS14700 -5.1 -7.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1078_RS04110 -5.1 -5.0 hypothetical protein compare
HMPREF1078_RS11820 -5.1 -3.5 M28 family peptidase compare
HMPREF1078_RS04685 -4.8 -1.6 30S ribosome-binding factor RbfA compare
HMPREF1078_RS14945 -4.8 -4.7 DUF1282 family protein compare
HMPREF1078_RS15845 -4.7 -6.5 copper homeostasis protein CutC compare
HMPREF1078_RS17480 -4.7 -23.0 glycosyltransferase compare
HMPREF1078_RS13185 -4.6 -3.2 cytochrome c biogenesis protein CcdA compare
HMPREF1078_RS17540 -4.5 -3.1 glycosyltransferase family 2 protein compare
HMPREF1078_RS11430 -4.5 -3.1 iron ABC transporter permease compare
HMPREF1078_RS12470 -4.5 -3.1 ABC transporter substrate-binding protein compare
HMPREF1078_RS05935 -4.5 -3.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1078_RS14085 -4.4 -3.1 lysophospholipid acyltransferase family protein compare
HMPREF1078_RS07780 -4.4 -3.0 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1078_RS12475 -4.4 -3.0 hypothetical protein compare
HMPREF1078_RS04555 -4.3 -3.0 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS02175 -4.3 -10.8 patatin-like phospholipase family protein compare
HMPREF1078_RS05870 -4.3 -3.0 PglZ domain-containing protein compare
HMPREF1078_RS04820 -4.1 -2.8 type IX secretion system outer membrane channel protein PorV compare
HMPREF1078_RS15325 -4.1 -2.8 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase compare
HMPREF1078_RS13270 -4.1 -4.0 ATP-binding protein compare
HMPREF1078_RS12480 -4.1 -2.8 TonB-dependent receptor compare
HMPREF1078_RS05515 -4.0 -4.8 gliding motility protein GldN compare
HMPREF1078_RS16875 -4.0 -2.7 type I methionyl aminopeptidase compare
HMPREF1078_RS17490 -4.0 -19.6 FdtA/QdtA family cupin domain-containing protein compare
HMPREF1078_RS05500 -4.0 -4.7 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HMPREF1078_RS06560 -3.9 -24.2 two-component regulator propeller domain-containing protein compare
HMPREF1078_RS10120 -3.9 -5.3 glutamine-hydrolyzing GMP synthase compare
HMPREF1078_RS15315 -3.9 -10.5 DUF4831 family protein compare
HMPREF1078_RS04440 -3.9 -5.8 AAA family ATPase compare
HMPREF1078_RS14210 -3.8 -2.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1078_RS04840 -3.7 -15.3 type IX secretion system sortase PorU compare
HMPREF1078_RS17495 -3.7 -26.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
HMPREF1078_RS13995 -3.7 -17.5 hypothetical protein compare
HMPREF1078_RS05505 -3.7 -5.1 gliding motility protein GldL compare
HMPREF1078_RS10005 -3.7 -9.2 TonB-dependent receptor compare
HMPREF1078_RS17485 -3.7 -24.4 glycosyl transferase compare
HMPREF1078_RS05495 -3.6 -4.3 type IX secretion system membrane protein PorP/SprF compare
HMPREF1078_RS17080 -3.6 -8.3 ATP-binding cassette domain-containing protein compare
HMPREF1078_RS13315 -3.6 -2.5 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1078_RS11310 -3.6 -4.2 polyketide cyclase compare
HMPREF1078_RS00195 -3.5 -16.6 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1078_RS06175 -3.5 -2.4 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1078_RS05510 -3.5 -4.8 gliding motility protein GldM compare
HMPREF1078_RS11980 -3.5 -2.4 thiamine diphosphokinase compare
HMPREF1078_RS11105 -3.5 -7.0 type IX secretion system protein PorQ compare
HMPREF1078_RS05620 -3.5 -14.3 tetratricopeptide repeat protein compare
HMPREF1078_RS10885 -3.4 -12.6 tyrosine recombinase XerC compare
HMPREF1078_RS17075 -3.4 -9.3 ABC transporter permease compare
HMPREF1078_RS04980 -3.3 -5.8 hypothetical protein compare
HMPREF1078_RS15575 -3.3 -10.2 glucosamine-6-phosphate deaminase compare
HMPREF1078_RS17255 -3.3 -16.4 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS06745 -3.3 -2.3 uroporphyrinogen-III synthase compare
HMPREF1078_RS02430 -3.3 -8.0 lipocalin-like domain-containing protein compare
HMPREF1078_RS05175 -3.2 -4.9 SDR family oxidoreductase compare
HMPREF1078_RS13020 -3.2 -11.8 cell surface protein SprA compare
HMPREF1078_RS04925 -3.2 -2.2 elongation factor P compare
HMPREF1078_RS07775 -3.2 -5.4 twin-arginine translocase subunit TatC compare
HMPREF1078_RS13015 -3.2 -2.2 Holliday junction branch migration protein RuvA compare
HMPREF1078_RS04510 -3.2 -13.5 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS13640 -3.2 -8.7 SDR family oxidoreductase compare
HMPREF1078_RS13915 -3.2 -10.0 tetratricopeptide repeat protein compare
HMPREF1078_RS07165 -3.2 -3.1 glycosyltransferase family 9 protein compare
HMPREF1078_RS16130 -3.2 -9.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HMPREF1078_RS10745 -3.2 -13.7 MlaD family protein compare
HMPREF1078_RS00960 -3.2 -2.4 V-type ATP synthase subunit D compare
HMPREF1078_RS10780 -3.2 -18.9 capsule assembly Wzi family protein compare
HMPREF1078_RS07160 -3.1 -2.2 DUF4254 domain-containing protein compare
HMPREF1078_RS11260 -3.1 -6.9 OmpH family outer membrane protein compare
HMPREF1078_RS04710 -3.1 -15.5 DUF4954 family protein compare
HMPREF1078_RS04355 -3.0 -6.1 hypothetical protein compare
HMPREF1078_RS15765 -3.0 -10.1 RNA polymerase sigma factor compare
HMPREF1078_RS08715 -3.0 -9.6 galactokinase compare
HMPREF1078_RS07205 -3.0 -4.9 shikimate kinase compare
HMPREF1078_RS16730 -3.0 -8.2 acyltransferase compare
HMPREF1078_RS08660 -3.0 -6.9 glycosyltransferase family 2 protein compare
HMPREF1078_RS16110 -3.0 -6.7 hypothetical protein compare
HMPREF1078_RS17065 -3.0 -4.1 CPBP family intramembrane metalloprotease compare
HMPREF1078_RS11290 -3.0 -8.0 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1078_RS04370 -2.9 -1.6 30S ribosomal protein S1 compare
HMPREF1078_RS06425 -2.9 -8.3 DUF4252 domain-containing protein compare
HMPREF1078_RS02390 -2.9 -6.2 tetratricopeptide repeat protein compare
HMPREF1078_RS00795 -2.9 -11.5 sigma-70 family RNA polymerase sigma factor compare
HMPREF1078_RS10160 -2.9 -4.0 OmpA family protein compare
HMPREF1078_RS01870 -2.9 -7.0 phosphatase PAP2 family protein compare
HMPREF1078_RS16230 -2.9 -3.9 porin family protein compare
HMPREF1078_RS04655 -2.9 -3.8 penicillin-binding protein compare
HMPREF1078_RS14540 -2.9 -15.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1078_RS07885 -2.8 -10.8 hypothetical protein compare
HMPREF1078_RS12640 -2.8 -3.3 RluA family pseudouridine synthase compare
HMPREF1078_RS08505 -2.8 -11.7 glycosyltransferase family 39 protein compare
HMPREF1078_RS00095 -2.8 -12.1 recombinase RecA compare
HMPREF1078_RS17005 -2.8 -1.9 DNA mismatch repair endonuclease MutL compare
HMPREF1078_RS07175 -2.8 -1.9 lipopolysaccharide kinase InaA family protein compare
HMPREF1078_RS05615 -2.7 -10.1 glucuronate isomerase compare
HMPREF1078_RS13635 -2.7 -12.2 mannonate dehydratase compare
HMPREF1078_RS14555 -2.7 -4.7 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1078_RS13930 -2.7 -4.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HMPREF1078_RS02145 -2.7 -11.7 serine hydroxymethyltransferase compare
HMPREF1078_RS00060 -2.6 -1.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
HMPREF1078_RS04435 -2.6 -6.1 ParB/RepB/Spo0J family partition protein compare
HMPREF1078_RS16115 -2.6 -5.6 hypothetical protein compare
HMPREF1078_RS14285 -2.6 -5.4 IMP dehydrogenase compare
HMPREF1078_RS15105 -2.6 -1.7 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1078_RS13415 -2.6 -1.9 LuxR C-terminal-related transcriptional regulator compare
HMPREF1078_RS07725 -2.6 -8.4 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1078_RS11135 -2.6 -1.7 hypothetical protein compare
HMPREF1078_RS07185 -2.5 -13.4 DUF5672 family protein compare
HMPREF1078_RS14680 -2.5 -1.7 pantoate--beta-alanine ligase compare
HMPREF1078_RS15460 -2.5 -7.3 DUF3078 domain-containing protein compare
HMPREF1078_RS13645 -2.5 -12.8 LacI family DNA-binding transcriptional regulator compare
HMPREF1078_RS13175 -2.5 -1.7 hypothetical protein compare
HMPREF1078_RS04705 -2.5 -5.1 site-specific tyrosine recombinase XerD compare
HMPREF1078_RS06530 -2.5 -7.5 radical SAM protein compare
HMPREF1078_RS12790 -2.5 -10.4 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1078_RS16790 -2.5 -4.9 S9 family peptidase compare
HMPREF1078_RS08705 -2.4 -10.2 aldose epimerase family protein compare
HMPREF1078_RS11275 -2.4 -3.2 DUF6089 family protein compare
HMPREF1078_RS15400 -2.4 -11.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1078_RS17700 -2.4 -11.0 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS00025 -2.4 -10.0 Rossmann-like and DUF2520 domain-containing protein compare
HMPREF1078_RS04515 -2.4 -9.4 DUF1080 domain-containing protein compare
HMPREF1078_RS13050 -2.4 -1.6 primosomal protein N' compare
HMPREF1078_RS14535 -2.4 -11.5 DUF4837 family protein compare
HMPREF1078_RS15335 -2.3 -6.9 acetylglutamate kinase compare
HMPREF1078_RS11655 -2.3 -9.6 FprA family A-type flavoprotein compare
HMPREF1078_RS07610 -2.3 -7.6 glycosyltransferase family 2 protein compare
HMPREF1078_RS15370 -2.3 -8.5 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1078_RS00940 -2.3 -4.4 hypothetical protein compare
HMPREF1078_RS16340 -2.3 -16.5 SusC/RagA family TonB-linked outer membrane protein compare
HMPREF1078_RS16215 -2.3 -9.4 preprotein translocase subunit YajC compare
HMPREF1078_RS04660 -2.3 -0.9 FtsL-like putative cell division protein compare
HMPREF1078_RS13435 -2.3 -9.7 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HMPREF1078_RS07320 -2.3 -10.6 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS04665 -2.3 -1.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
HMPREF1078_RS04520 -2.3 -7.7 hypothetical protein compare
HMPREF1078_RS01450 -2.3 -9.2 cytochrome c biogenesis protein CcsA compare
HMPREF1078_RS13110 -2.3 -1.9 gamma carbonic anhydrase family protein compare
HMPREF1078_RS15405 -2.2 -5.2 NAD(P)-dependent oxidoreductase compare
HMPREF1078_RS17750 -2.2 -11.1 long-chain fatty acid--CoA ligase compare
HMPREF1078_RS09490 -2.2 -1.5 PD-(D/E)XK nuclease family protein compare
HMPREF1078_RS04700 -2.2 -7.8 type II 3-dehydroquinate dehydratase compare
HMPREF1078_RS12450 -2.2 -11.3 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1078_RS14525 -2.2 -1.5 SurA N-terminal domain-containing protein compare
HMPREF1078_RS16165 -2.2 -6.8 regulatory iron-sulfur-containing complex subunit RicT compare
HMPREF1078_RS01860 -2.2 -1.5 BatD family protein compare
HMPREF1078_RS09715 -2.2 -1.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HMPREF1078_RS09990 -2.2 -3.9 WbuC family cupin fold metalloprotein compare
HMPREF1078_RS00210 -2.2 -1.5 acyl-CoA carboxylase subunit beta compare
HMPREF1078_RS19910 -2.2 -2.1 UDP-2,3-diacylglucosamine diphosphatase compare
HMPREF1078_RS04805 -2.2 -3.3 UvrD-helicase domain-containing protein compare
HMPREF1078_RS07310 -2.2 -5.4 methionine--tRNA ligase compare
HMPREF1078_RS01170 -2.2 -3.4 carbon-nitrogen hydrolase compare
HMPREF1078_RS00080 -2.2 -11.3 polysaccharide deacetylase family protein compare
HMPREF1078_RS07845 -2.2 -1.5 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1078_RS06345 -2.1 -7.1 redox-regulated ATPase YchF compare
HMPREF1078_RS16710 -2.1 -4.2 chorismate synthase compare
HMPREF1078_RS06840 -2.1 -8.6 polysaccharide deacetylase family protein compare
HMPREF1078_RS14615 -2.1 -1.4 tetratricopeptide repeat protein compare
HMPREF1078_RS00215 -2.1 -1.4 biotin/lipoyl-binding protein compare
HMPREF1078_RS14505 -2.1 -12.5 hypothetical protein compare
HMPREF1078_RS05885 -2.1 -4.1 ribonuclease R compare
HMPREF1078_RS17055 -2.1 -12.7 trigger factor compare
HMPREF1078_RS07895 -2.1 -4.4 molecular chaperone DnaJ compare
HMPREF1078_RS16400 -2.1 -4.3 nitroreductase family protein compare
HMPREF1078_RS00090 -2.1 -8.2 GNAT family N-acetyltransferase compare
HMPREF1078_RS11930 -2.1 -4.4 VOC family protein compare
HMPREF1078_RS14620 -2.0 -6.6 DNA replication and repair protein RecF compare
HMPREF1078_RS14200 -2.0 -2.9 shikimate dehydrogenase compare
HMPREF1078_RS01830 -2.0 -1.4 MoxR family ATPase compare
HMPREF1078_RS03495 -2.0 -2.1 hypothetical protein compare
HMPREF1078_RS04365 -2.0 -3.4 hypothetical protein compare
HMPREF1078_RS14560 -2.0 -1.3 lysophospholipid acyltransferase family protein compare
HMPREF1078_RS15270 -2.0 -8.0 RIP metalloprotease RseP compare
HMPREF1078_RS16335 -2.0 -16.2 hybrid sensor histidine kinase/response regulator transcription factor compare
HMPREF1078_RS05920 -2.0 -1.3 RNA polymerase factor sigma-54 compare
HMPREF1078_RS16345 -2.0 -13.2 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1078_RS18905 -2.0 -6.7 diacylglycerol kinase family protein compare
HMPREF1078_RS12605 -2.0 -9.6 BamA/TamA family outer membrane protein compare
HMPREF1078_RS12600 -2.0 -9.4 translocation/assembly module TamB domain-containing protein compare
HMPREF1078_RS01385 -2.0 -1.9 LemA family protein compare
HMPREF1078_RS16080 -1.9 -7.9 TrkA C-terminal domain-containing protein compare
HMPREF1078_RS00055 -1.9 -2.2 ferrous iron transport protein B compare
HMPREF1078_RS00955 -1.9 -7.8 V-type ATP synthase subunit B compare


Specific Phenotypes

None in this experiment

For Parabacteroides merdae CL09T00C40 in mouse experiments

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono across organisms