Experiment set3S382 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7

Group: mouse
Media: + diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono
Culturing: Bvulgatus_CL09T03C04_ML5
By: Surya Tripathi on 12/1/24

Specific Phenotypes

For 5 genes in this experiment

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono in Phocaeicola vulgatus CL09T03C04

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono across organisms

SEED Subsystems

Subsystem #Specific
Chitin and N-acetylglucosamine utilization 1
Fatty Acid Biosynthesis FASII 1
Predicted carbohydrate hydrolases 1
mycolic acid synthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
gondoate biosynthesis (anaerobic) 4 4 1
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) 12 9 3
palmitate biosynthesis III 29 21 7
tetradecanoate biosynthesis (mitochondria) 25 17 6
palmitate biosynthesis II (type II fatty acid synthase) 31 29 7
palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) 9 8 2
oleate biosynthesis IV (anaerobic) 14 13 3
superpathway of fatty acids biosynthesis (E. coli) 53 47 11
fatty acid elongation -- saturated 5 5 1
superpathway of unsaturated fatty acids biosynthesis (E. coli) 20 17 4
cis-vaccenate biosynthesis 5 4 1
8-amino-7-oxononanoate biosynthesis IV 5 4 1
superpathway of fatty acid biosynthesis II (plant) 43 37 8
8-amino-7-oxononanoate biosynthesis I 11 9 2
odd iso-branched-chain fatty acid biosynthesis 34 25 6
anteiso-branched-chain fatty acid biosynthesis 34 25 6
even iso-branched-chain fatty acid biosynthesis 34 25 6
stearate biosynthesis II (bacteria and plants) 6 5 1
(5Z)-dodecenoate biosynthesis I 6 5 1
stearate biosynthesis IV 6 4 1
(5Z)-dodecenoate biosynthesis II 6 4 1
petroselinate biosynthesis 6 2 1
streptorubin B biosynthesis 34 20 5
β-(1,4)-mannan degradation 7 4 1
biotin biosynthesis I 15 13 2
superpathway of fatty acid biosynthesis I (E. coli) 16 14 2
2-allylmalonyl-CoA biosynthesis 8 2 1
mycolate biosynthesis 205 23 5
superpathway of mycolate biosynthesis 239 24 5