Experiment set3S356 for Phocaeicola vulgatus CL09T03C04

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9

Group: mouse
Media: + diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono
Culturing: Bvulgatus_CL09T03C04_ML5
By: Surya Tripathi on 12/1/24

Specific Phenotypes

For 10 genes in this experiment

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono in Phocaeicola vulgatus CL09T03C04

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono across organisms

SEED Subsystems

Subsystem	#Specific
Branched-Chain Amino Acid Biosynthesis	1
Chitin and N-acetylglucosamine utilization	1
Coenzyme B12 biosynthesis	1
Fatty Acid Biosynthesis FASII	1
Predicted carbohydrate hydrolases	1
Threonine degradation	1
mycolic acid synthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Fatty acid biosynthesis
• Glycine, serine and threonine metabolism
• Valine, leucine and isoleucine biosynthesis
• Biosynthesis of unsaturated fatty acids

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-methionine degradation II	3	2	2
L-threonine degradation I	6	6	3
L-threonine degradation V	2	2	1
L-isoleucine biosynthesis I (from threonine)	7	7	3
gondoate biosynthesis (anaerobic)	4	4	1
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)	12	9	3
palmitate biosynthesis III	29	21	7
tetradecanoate biosynthesis (mitochondria)	25	17	6
superpathway of L-isoleucine biosynthesis I	13	12	3
palmitate biosynthesis II (type II fatty acid synthase)	31	29	7
palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)	9	8	2
oleate biosynthesis IV (anaerobic)	14	13	3
hypoglycin biosynthesis	14	3	3
superpathway of fatty acids biosynthesis (E. coli)	53	47	11
fatty acid elongation -- saturated	5	5	1
superpathway of unsaturated fatty acids biosynthesis (E. coli)	20	17	4
8-amino-7-oxononanoate biosynthesis IV	5	4	1
cis-vaccenate biosynthesis	5	4	1
superpathway of fatty acid biosynthesis II (plant)	43	37	8
8-amino-7-oxononanoate biosynthesis I	11	9	2
superpathway of branched chain amino acid biosynthesis	17	17	3
odd iso-branched-chain fatty acid biosynthesis	34	25	6
anteiso-branched-chain fatty acid biosynthesis	34	25	6
even iso-branched-chain fatty acid biosynthesis	34	25	6
superpathway of L-threonine metabolism	18	15	3
stearate biosynthesis II (bacteria and plants)	6	5	1
(5Z)-dodecenoate biosynthesis I	6	5	1
(5Z)-dodecenoate biosynthesis II	6	4	1
stearate biosynthesis IV	6	4	1
petroselinate biosynthesis	6	2	1
streptorubin B biosynthesis	34	20	5
β-(1,4)-mannan degradation	7	4	1
biotin biosynthesis I	15	13	2
superpathway of fatty acid biosynthesis I (E. coli)	16	14	2
2-allylmalonyl-CoA biosynthesis	8	2	1
cyclosporin A biosynthesis	15	2	1
mycolate biosynthesis	205	23	5
superpathway of mycolate biosynthesis	239	24	5