Experiment set3S353 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS12490 -6.0 -2.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS12575 -5.7 -5.6 mannose-1-phosphate guanylyltransferase compare
HMPREF1058_RS09675 -5.5 -3.6 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS10710 -5.5 -3.8 DUF3108 domain-containing protein compare
HMPREF1058_RS15565 -5.2 -5.1 hypothetical protein compare
HMPREF1058_RS12035 -5.2 -3.5 phosphate butyryltransferase compare
HMPREF1058_RS11040 -5.1 -3.5 polysaccharide deacetylase family protein compare
HMPREF1058_RS02405 -5.0 -4.8 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS12115 -5.0 -4.8 acetylglutamate kinase compare
HMPREF1058_RS00625 -4.9 -6.7 MFS transporter compare
HMPREF1058_RS12040 -4.8 -8.7 butyrate kinase compare
HMPREF1058_RS08840 -4.8 -3.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS08835 -4.8 -5.7 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS14565 -4.7 -7.2 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS12315 -4.6 -8.8 glycoside hydrolase family 97 protein compare
HMPREF1058_RS02410 -4.6 -4.5 methylmalonyl-CoA mutase compare
HMPREF1058_RS10965 -4.6 -6.2 cation transporter compare
HMPREF1058_RS12780 -4.3 -3.0 M20 family metallo-hydrolase compare
HMPREF1058_RS14610 -4.3 -3.0 adenylosuccinate synthase compare
HMPREF1058_RS00205 -4.3 -3.0 cation:proton antiporter compare
HMPREF1058_RS14740 -4.3 -4.1 iron ABC transporter permease compare
HMPREF1058_RS09590 -4.2 -4.1 hypothetical protein compare
HMPREF1058_RS13595 -4.2 -5.0 phosphotransferase compare
HMPREF1058_RS15075 -4.2 -2.9 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS14120 -4.2 -5.0 DUF349 domain-containing protein compare
HMPREF1058_RS08060 -4.2 -4.1 hypothetical protein compare
HMPREF1058_RS06870 -4.1 -8.4 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS18635 -4.1 -1.2 PepSY-like domain-containing protein compare
HMPREF1058_RS09180 -4.0 -2.7 hypothetical protein compare
HMPREF1058_RS14655 -4.0 -4.7 CusA/CzcA family heavy metal efflux RND transporter compare
HMPREF1058_RS13655 -4.0 -8.5 cardiolipin synthase compare
HMPREF1058_RS09620 -3.9 -2.6 hypothetical protein compare
HMPREF1058_RS09745 -3.9 -4.7 glycosyltransferase compare
HMPREF1058_RS06875 -3.9 -3.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HMPREF1058_RS02975 -3.8 -1.4 hypothetical protein compare
HMPREF1058_RS10840 -3.8 -2.1 hypothetical protein compare
HMPREF1058_RS07955 -3.8 -2.6 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS08640 -3.7 -2.0 acetylornithine carbamoyltransferase compare
HMPREF1058_RS08995 -3.7 -12.0 GH92 family glycosyl hydrolase compare
HMPREF1058_RS14200 -3.7 -6.2 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS14745 -3.7 -3.6 ABC transporter substrate-binding protein compare
HMPREF1058_RS07720 -3.7 -5.1 sigma-70 family RNA polymerase sigma factor compare
HMPREF1058_RS14770 -3.7 -2.6 prephenate dehydrogenase compare
HMPREF1058_RS10075 -3.7 -10.0 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS10525 -3.6 -13.7 carbohydrate binding domain-containing protein compare
HMPREF1058_RS02095 -3.6 -4.3 efflux transporter outer membrane subunit compare
HMPREF1058_RS06380 -3.6 -3.5 copper homeostasis protein CutC compare
HMPREF1058_RS10910 -3.5 -14.4 glycosyltransferase family 39 protein compare
HMPREF1058_RS07040 -3.5 -6.8 tetratricopeptide repeat protein compare
HMPREF1058_RS10995 -3.5 -2.4 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS14735 -3.5 -5.8 ABC transporter ATP-binding protein compare
HMPREF1058_RS14645 -3.5 -4.1 hypothetical protein compare
HMPREF1058_RS15660 -3.5 -9.8 galactokinase compare
HMPREF1058_RS17070 -3.4 -8.3 ribokinase compare
HMPREF1058_RS07420 -3.4 -3.3 exo-alpha-sialidase compare
HMPREF1058_RS01900 -3.4 -1.8 hypothetical protein compare
HMPREF1058_RS09685 -3.4 -8.4 tetratricopeptide repeat protein compare
HMPREF1058_RS01450 -3.4 -2.0 acetyl-CoA carboxylase biotin carboxylase subunit compare
HMPREF1058_RS12105 -3.4 -2.3 shikimate kinase compare
HMPREF1058_RS14785 -3.3 -2.3 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS14790 -3.3 -8.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS15635 -3.3 -10.4 L-arabinose isomerase compare
HMPREF1058_RS16625 -3.3 -2.3 hypothetical protein compare
HMPREF1058_RS10900 -3.3 -8.5 glycosyltransferase compare
HMPREF1058_RS08025 -3.3 -4.5 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS10295 -3.3 -1.5 hypothetical protein compare
HMPREF1058_RS07300 -3.3 -3.9 MFS transporter compare
HMPREF1058_RS07295 -3.3 -2.3 AGE family epimerase/isomerase compare
HMPREF1058_RS06230 -3.3 -7.9 fucose isomerase compare
HMPREF1058_RS09185 -3.2 -2.2 DUF4252 domain-containing protein compare
HMPREF1058_RS08855 -3.2 -11.2 arginine repressor compare
HMPREF1058_RS14660 -3.2 -2.2 TolC family protein compare
HMPREF1058_RS10270 -3.2 -2.1 hypothetical protein compare
HMPREF1058_RS14550 -3.2 -8.0 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS00620 -3.2 -13.6 GH32 C-terminal domain-containing protein compare
HMPREF1058_RS07390 -3.2 -2.2 cyclically-permuted mutarotase family protein compare
HMPREF1058_RS17235 -3.2 -4.8 glycoside hydrolase family 88 protein compare
HMPREF1058_RS10460 -3.2 -12.0 NAD-dependent epimerase/dehydratase family protein compare
HMPREF1058_RS16760 -3.2 -2.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS02880 -3.1 -10.8 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS02215 -3.1 -8.5 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
HMPREF1058_RS16620 -3.1 -2.1 GGGtGRT protein compare
HMPREF1058_RS15640 -3.1 -4.7 L-ribulose-5-phosphate 4-epimerase compare
HMPREF1058_RS09000 -3.1 -5.3 FecR domain-containing protein compare
HMPREF1058_RS02735 -3.1 -7.0 zinc metallopeptidase compare
HMPREF1058_RS02100 -3.1 -8.2 efflux RND transporter permease subunit compare
HMPREF1058_RS06195 -3.1 -2.1 diaminopimelate decarboxylase compare
HMPREF1058_RS17775 -3.1 -3.6 hypothetical protein compare
HMPREF1058_RS02155 -3.1 -5.5 ParB-like nuclease domain-containing protein compare
HMPREF1058_RS16195 -3.0 -3.7 hypothetical protein compare
HMPREF1058_RS01460 -3.0 -1.6 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS09460 -3.0 -9.7 gamma carbonic anhydrase family protein compare
HMPREF1058_RS02150 -3.0 -8.3 DUF3440 domain-containing protein compare
HMPREF1058_RS16235 -3.0 -9.5 AMP-binding protein compare
HMPREF1058_RS07290 -3.0 -5.3 dihydrodipicolinate synthase family protein compare
HMPREF1058_RS02885 -3.0 -9.6 response regulator transcription factor compare
HMPREF1058_RS17170 -3.0 -4.5 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS07005 -3.0 -3.5 alpha-N-arabinofuranosidase compare
HMPREF1058_RS10505 -2.9 -16.5 DUF4981 domain-containing protein compare
HMPREF1058_RS06085 -2.9 -2.0 hypothetical protein compare
HMPREF1058_RS14650 -2.9 -2.0 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS06640 -2.9 -2.0 chain-length determining protein compare
HMPREF1058_RS17150 -2.9 -10.0 S41 family peptidase compare
HMPREF1058_RS06290 -2.9 -6.1 lipocalin-like domain-containing protein compare
HMPREF1058_RS10835 -2.9 -2.0 UDP-galactopyranose mutase compare
HMPREF1058_RS07655 -2.8 -1.1 hypothetical protein compare
HMPREF1058_RS10080 -2.8 -11.7 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS16935 -2.8 -8.2 hypothetical protein compare
HMPREF1058_RS03805 -2.8 -2.7 PorT family protein compare
HMPREF1058_RS16500 -2.8 -1.9 OadG family protein compare
HMPREF1058_RS04375 -2.8 -1.9 carbon-nitrogen hydrolase compare
HMPREF1058_RS07750 -2.7 -11.0 efflux RND transporter permease subunit compare
HMPREF1058_RS08065 -2.7 -6.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HMPREF1058_RS07380 -2.7 -9.8 GH92 family glycosyl hydrolase compare
HMPREF1058_RS06285 -2.7 -9.6 hypothetical protein compare
HMPREF1058_RS09750 -2.7 -1.9 glycosyltransferase compare
HMPREF1058_RS00605 -2.7 -5.8 prolipoprotein diacylglyceryl transferase compare
HMPREF1058_RS02075 -2.7 -8.8 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS06525 -2.7 -7.7 hypothetical protein compare
HMPREF1058_RS07190 -2.7 -5.4 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS15630 -2.7 -9.3 FGGY-family carbohydrate kinase compare
HMPREF1058_RS14755 -2.7 -11.2 hypothetical protein compare
HMPREF1058_RS06645 -2.7 -2.6 SLBB domain-containing protein compare
HMPREF1058_RS06520 -2.7 -5.1 capsular polysaccharide synthesis protein compare
HMPREF1058_RS14490 -2.6 -4.4 S9 family peptidase compare
HMPREF1058_RS00215 -2.6 -5.6 FKBP-type peptidyl-prolyl cis-trans isomerase compare
HMPREF1058_RS04005 -2.6 -4.0 patatin-like phospholipase family protein compare
HMPREF1058_RS09610 -2.6 -5.3 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS06060 -2.6 -3.1 YegS/Rv2252/BmrU family lipid kinase compare
HMPREF1058_RS00590 -2.6 -2.5 hypothetical protein compare
HMPREF1058_RS18680 -2.6 -3.1 F0F1 ATP synthase subunit B compare
HMPREF1058_RS01650 -2.6 -1.8 hypothetical protein compare
HMPREF1058_RS09145 -2.6 -14.4 TonB-dependent receptor compare
HMPREF1058_RS07415 -2.6 -9.3 family 20 glycosylhydrolase compare
HMPREF1058_RS0119790 -2.6 -4.3 glycosyltransferase compare
HMPREF1058_RS08615 -2.6 -6.7 RluA family pseudouridine synthase compare
HMPREF1058_RS10490 -2.6 -8.9 rhomboid family intramembrane serine protease compare
HMPREF1058_RS06595 -2.6 -4.9 hypothetical protein compare
HMPREF1058_RS17045 -2.6 -1.8 hypothetical protein compare
HMPREF1058_RS07760 -2.6 -13.0 efflux RND transporter permease subunit compare
HMPREF1058_RS06545 -2.5 -6.5 transcriptional regulator compare
HMPREF1058_RS04290 -2.5 -2.5 DUF1015 domain-containing protein compare
HMPREF1058_RS12345 -2.5 -10.2 4-alpha-glucanotransferase compare
HMPREF1058_RS14795 -2.5 -4.2 prephenate dehydratase compare
HMPREF1058_RS08845 -2.5 -8.1 argininosuccinate synthase compare
HMPREF1058_RS17885 -2.5 -9.6 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS07675 -2.5 -3.0 elongation factor G compare
HMPREF1058_RS14285 -2.5 -0.8 DUF5056 domain-containing protein compare
HMPREF1058_RS16505 -2.4 -1.7 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS11730 -2.4 -1.2 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS19090 -2.4 -0.7 tRNA-Phe compare
HMPREF1058_RS02105 -2.4 -4.6 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS06560 -2.4 -1.7 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS17060 -2.4 -1.7 HAD family hydrolase compare
HMPREF1058_RS16210 -2.4 -3.2 hypothetical protein compare
HMPREF1058_RS03210 -2.4 -10.5 alpha-glucan family phosphorylase compare
HMPREF1058_RS17050 -2.4 -1.6 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS07755 -2.4 -8.4 TolC family protein compare
HMPREF1058_RS11925 -2.4 -1.8 DUF2975 domain-containing protein compare
HMPREF1058_RS03105 -2.4 -3.0 ABC transporter permease compare
HMPREF1058_RS01655 -2.3 -1.6 DUF4296 domain-containing protein compare
HMPREF1058_RS15750 -2.3 -9.0 glucosaminidase domain-containing protein compare
HMPREF1058_RS14760 -2.3 -12.4 TonB-dependent receptor compare
HMPREF1058_RS04015 -2.3 -2.8 ATP-dependent Clp protease ATP-binding subunit compare
HMPREF1058_RS11315 -2.3 -7.1 tRNA pseudouridine(55) synthase TruB compare
HMPREF1058_RS18690 -2.3 -3.8 F0F1 ATP synthase subunit alpha compare
HMPREF1058_RS11310 -2.3 -1.6 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS09585 -2.3 -9.7 argininosuccinate lyase compare
HMPREF1058_RS11920 -2.3 -5.8 DUF2975 domain-containing protein compare
HMPREF1058_RS07650 -2.3 -3.3 MarR family transcriptional regulator compare
HMPREF1058_RS10725 -2.3 -7.0 6-phosphofructokinase compare
HMPREF1058_RS04715 -2.3 -3.8 PUR family DNA/RNA-binding protein compare
HMPREF1058_RS18815 -2.3 -6.0 AMP-binding protein compare
HMPREF1058_RS15735 -2.3 -3.0 hypothetical protein compare
HMPREF1058_RS10585 -2.2 -3.4 acyl carrier protein compare
HMPREF1058_RS16510 -2.2 -2.2 methylmalonyl-CoA epimerase compare
HMPREF1058_RS07970 -2.2 -7.7 chromate transporter compare
HMPREF1058_RS11295 -2.2 -7.5 methyltransferase domain-containing protein compare
HMPREF1058_RS02170 -2.2 -1.5 hypothetical protein compare
HMPREF1058_RS04035 -2.2 -1.5 hypothetical protein compare
HMPREF1058_RS03800 -2.2 -6.5 serine hydroxymethyltransferase compare
HMPREF1058_RS01685 -2.2 -1.5 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1058_RS00600 -2.2 -6.1 diaminopimelate dehydrogenase compare
HMPREF1058_RS10010 -2.2 -1.9 hypothetical protein compare
HMPREF1058_RS09150 -2.1 -10.3 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS00595 -2.1 -1.5 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS10275 -2.1 -9.2 RNA-splicing ligase RtcB compare
HMPREF1058_RS16855 -2.1 -0.6 LPS export ABC transporter periplasmic protein LptC compare
HMPREF1058_RS14075 -2.1 -1.4 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS12785 -2.1 -10.7 long-chain fatty acid--CoA ligase compare
HMPREF1058_RS16495 -2.1 -1.5 biotin/lipoyl-binding protein compare
HMPREF1058_RS04040 -2.1 -3.8 phosphatase PAP2 family protein compare
HMPREF1058_RS18220 -2.1 -4.0 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
HMPREF1058_RS06540 -2.1 -2.2 hypothetical protein compare
HMPREF1058_RS02910 -2.1 -12.4 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS07385 -2.1 -9.7 family 20 glycosylhydrolase compare
HMPREF1058_RS16685 -2.1 -9.5 methionine synthase compare
HMPREF1058_RS01690 -2.1 -2.4 sugar kinase compare
HMPREF1058_RS05145 -2.0 -1.4 ATP-binding protein compare
HMPREF1058_RS11300 -2.0 -5.6 ABC transporter permease compare


Specific Phenotypes

For 22 genes in this experiment

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono in Phocaeicola vulgatus CL09T03C04

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono across organisms