Experiment set3S353 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS07310 +11.6 47.4 glucosamine-6-phosphate deaminase compare
HMPREF1058_RS02220 +10.8 29.3 branched-chain amino acid aminotransferase compare
HMPREF1058_RS16830 +8.6 29.9 acyl-ACP thioesterase compare
HMPREF1058_RS14020 +8.1 45.2 cardiolipin synthase compare
HMPREF1058_RS16815 +6.5 11.5 dihydroxy-acid dehydratase compare
HMPREF1058_RS16820 +6.3 10.9 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS15460 +5.6 16.8 amidohydrolase compare
HMPREF1058_RS02495 +4.8 18.7 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS02480 +4.8 12.5 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS16515 +4.3 17.6 GNAT family N-acetyltransferase compare
HMPREF1058_RS02485 +4.2 18.2 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS21310 +4.1 9.1 hypothetical protein compare
HMPREF1058_RS10705 +3.8 16.9 hypothetical protein compare
HMPREF1058_RS07285 +3.7 16.2 ROK family transcriptional regulator compare
HMPREF1058_RS10860 +3.6 18.2 glycosyltransferase family 8 protein compare
HMPREF1058_RS03950 +3.6 2.8 type I restriction enzyme HsdR N-terminal domain-containing protein compare
HMPREF1058_RS15100 +3.5 7.2 hypothetical protein compare
HMPREF1058_RS16690 +3.5 12.8 NTP transferase domain-containing protein compare
HMPREF1058_RS02755 +3.2 2.2 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS10890 +3.1 11.1 glycosyltransferase family 2 protein compare
HMPREF1058_RS03200 +3.1 11.3 V-type ATP synthase subunit K compare
HMPREF1058_RS15090 +3.0 8.4 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS11270 +3.0 15.7 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS08040 +2.9 2.8 HD domain-containing protein compare
HMPREF1058_RS17815 +2.9 15.9 MFS transporter compare
HMPREF1058_RS03180 +2.9 14.6 V-type ATP synthase subunit A compare
HMPREF1058_RS02250 +2.8 17.8 hypothetical protein compare
HMPREF1058_RS03170 +2.8 15.1 hypothetical protein compare
HMPREF1058_RS18570 +2.7 5.6 GNAT family N-acetyltransferase compare
HMPREF1058_RS10815 +2.7 6.7 DUF4249 domain-containing protein compare
HMPREF1058_RS02245 +2.7 3.9 cytidylate kinase-like family protein compare
HMPREF1058_RS03190 +2.6 10.6 V-type ATP synthase subunit D compare
HMPREF1058_RS03195 +2.6 10.5 V-type ATP synthase subunit I compare
HMPREF1058_RS09240 +2.6 11.4 type I methionyl aminopeptidase compare
HMPREF1058_RS02800 +2.6 8.4 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS03185 +2.6 13.9 V-type ATP synthase subunit B compare
HMPREF1058_RS14605 +2.5 6.5 transcriptional repressor compare
HMPREF1058_RS05200 +2.5 9.7 MaoC family dehydratase compare
HMPREF1058_RS02935 +2.5 11.2 sulfotransferase compare
HMPREF1058_RS05790 +2.5 2.3 hypothetical protein compare
HMPREF1058_RS16825 +2.4 2.2 acetolactate synthase small subunit compare
HMPREF1058_RS07245 +2.4 7.7 Rne/Rng family ribonuclease compare
HMPREF1058_RS15080 +2.4 6.9 glycoside hydrolase family 97 protein compare
HMPREF1058_RS04430 +2.4 10.6 alpha-1,2-fucosyltransferase compare
HMPREF1058_RS10885 +2.4 9.7 glycosyltransferase compare
HMPREF1058_RS02530 +2.3 4.0 GxxExxY protein compare
HMPREF1058_RS02960 +2.3 8.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
HMPREF1058_RS11435 +2.3 7.4 DNA mismatch repair protein MutS compare
HMPREF1058_RS21625 +2.3 3.8 hypothetical protein compare
HMPREF1058_RS03175 +2.3 9.9 DUF2764 domain-containing protein compare
HMPREF1058_RS02255 +2.3 6.7 DUF3244 domain-containing protein compare
HMPREF1058_RS11825 +2.2 4.5 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS13425 +2.2 5.7 HU family DNA-binding protein compare
HMPREF1058_RS02950 +2.2 6.3 adenylyl-sulfate kinase compare
HMPREF1058_RS02490 +2.2 3.4 four helix bundle protein compare
HMPREF1058_RS02955 +2.2 8.1 SLC13/DASS family transporter compare
HMPREF1058_RS05035 +2.1 11.3 C69 family dipeptidase compare
HMPREF1058_RS16250 +2.1 6.6 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS02535 +2.1 7.1 imidazolonepropionase compare
HMPREF1058_RS15095 +2.1 5.6 hypothetical protein compare
HMPREF1058_RS02130 +2.1 8.1 hypothetical protein compare
HMPREF1058_RS15085 +2.1 8.3 TonB-dependent receptor compare
HMPREF1058_RS01640 +2.1 13.3 BamA/TamA family outer membrane protein compare
HMPREF1058_RS10875 +2.1 8.4 glycosyltransferase compare
HMPREF1058_RS04365 +2.1 13.1 translocation/assembly module TamB compare
HMPREF1058_RS02750 +2.0 1.4 BamA/TamA family outer membrane protein compare
HMPREF1058_RS10955 +2.0 10.9 phosphatase PAP2 family protein compare
HMPREF1058_RS02260 +2.0 7.3 hypothetical protein compare
HMPREF1058_RS05520 +2.0 1.9 DUF4357 domain-containing protein compare
HMPREF1058_RS12735 +1.9 8.8 HDIG domain-containing protein compare
HMPREF1058_RS14545 +1.9 8.2 2-isopropylmalate synthase compare
HMPREF1058_RS05955 +1.9 8.6 hypothetical protein compare
HMPREF1058_RS06265 +1.8 6.3 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS00640 +1.8 2.3 amino acid-binding protein compare
HMPREF1058_RS01425 +1.8 5.2 sirohydrochlorin cobaltochelatase compare
HMPREF1058_RS02940 +1.8 8.0 sulfate adenylyltransferase subunit CysN compare
HMPREF1058_RS10805 +1.8 5.0 FecR family protein compare
HMPREF1058_RS15435 +1.8 11.2 hypothetical protein compare
HMPREF1058_RS05930 +1.7 6.7 MFS transporter compare
HMPREF1058_RS11880 +1.7 9.8 hypothetical protein compare
HMPREF1058_RS05945 +1.7 9.1 DUF4836 family protein compare
HMPREF1058_RS02525 +1.7 4.6 glutamate formimidoyltransferase compare
HMPREF1058_RS02520 +1.7 5.5 urocanate hydratase compare
HMPREF1058_RS03450 +1.7 1.4 hypothetical protein compare
HMPREF1058_RS09665 +1.7 4.8 class I SAM-dependent methyltransferase compare
HMPREF1058_RS10230 +1.7 2.1 hypothetical protein compare
HMPREF1058_RS14505 +1.6 2.8 mechanosensitive ion channel compare
HMPREF1058_RS06080 +1.6 6.5 glutamine synthetase III compare
HMPREF1058_RS15525 +1.6 3.1 hypothetical protein compare
HMPREF1058_RS21475 +1.6 1.7 smalltalk protein compare
HMPREF1058_RS01205 +1.6 3.4 methyltransferase compare
HMPREF1058_RS01445 +1.6 1.8 cysteine-rich CWC family protein compare
HMPREF1058_RS05950 +1.6 5.7 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS14500 +1.5 8.0 FprA family A-type flavoprotein compare
HMPREF1058_RS04995 +1.5 6.2 putative sulfate exporter family transporter compare
HMPREF1058_RS02945 +1.5 5.7 sulfate adenylyltransferase subunit CysD compare
HMPREF1058_RS02085 +1.5 6.0 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS04730 +1.5 3.7 YbbR-like domain-containing protein compare
HMPREF1058_RS0119640 +1.5 2.0 hypothetical protein compare
HMPREF1058_RS0119645 +1.5 4.9 AAA family ATPase compare
HMPREF1058_RS07165 +1.5 4.1 YtxH domain-containing protein compare
HMPREF1058_RS17865 +1.4 4.6 hypothetical protein compare
HMPREF1058_RS03000 +1.4 5.7 IMP dehydrogenase compare
HMPREF1058_RS07615 +1.4 3.9 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB compare
HMPREF1058_RS17035 +1.4 5.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS07205 +1.4 3.3 type I asparaginase compare
HMPREF1058_RS06070 +1.4 2.7 ferritin compare
HMPREF1058_RS16520 +1.4 3.0 nitroreductase family protein compare
HMPREF1058_RS14065 +1.4 6.7 lytic transglycosylase domain-containing protein compare
HMPREF1058_RS09860 +1.4 2.1 DUF3408 domain-containing protein compare
HMPREF1058_RS13045 +1.4 3.1 hypothetical protein compare
HMPREF1058_RS17015 +1.3 2.6 SpoIID/LytB domain-containing protein compare
HMPREF1058_RS10810 +1.3 3.6 TonB-dependent receptor compare
HMPREF1058_RS00175 +1.3 6.2 hypothetical protein compare
HMPREF1058_RS10765 +1.3 4.8 ribonuclease III compare
HMPREF1058_RS07945 +1.3 3.7 DUF4924 family protein compare
HMPREF1058_RS05105 +1.3 1.6 hypothetical protein compare
HMPREF1058_RS09490 +1.3 5.6 adenosine kinase compare
HMPREF1058_RS14365 +1.3 5.1 NADH:flavin oxidoreductase compare
HMPREF1058_RS08275 +1.3 6.0 DoxX family protein compare
HMPREF1058_RS17870 +1.2 5.5 metallophosphoesterase compare
HMPREF1058_RS02090 +1.2 4.7 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase compare
HMPREF1058_RS13015 +1.2 3.7 recombinase family protein compare
HMPREF1058_RS12675 +1.2 1.8 DUF488 family protein compare
HMPREF1058_RS07060 +1.2 6.3 DUF3869 domain-containing protein compare
HMPREF1058_RS05695 +1.2 2.8 helix-turn-helix domain-containing protein compare
HMPREF1058_RS02320 +1.2 4.0 hypothetical protein compare
HMPREF1058_RS12170 +1.2 1.4 hypothetical protein compare
HMPREF1058_RS12505 +1.2 0.8 RNA polymerase factor sigma-54 compare
HMPREF1058_RS06250 +1.2 6.6 AMP-binding protein compare
HMPREF1058_RS04515 +1.2 1.9 hypothetical protein compare
HMPREF1058_RS02685 +1.2 2.6 substrate-binding domain-containing protein compare
HMPREF1058_RS03885 +1.2 6.0 insulinase family protein compare
HMPREF1058_RS17645 +1.2 6.1 DUF5113 domain-containing protein compare
HMPREF1058_RS06180 +1.2 3.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS00710 +1.2 2.4 hypoxanthine phosphoribosyltransferase compare
HMPREF1058_RS02965 +1.1 4.2 BamA/TamA family outer membrane protein compare
HMPREF1058_RS07585 +1.1 4.2 NADPH-dependent oxidoreductase compare
HMPREF1058_RS07840 +1.1 1.7 hypothetical protein compare
HMPREF1058_RS0119615 +1.1 1.1 hypothetical protein compare
HMPREF1058_RS06175 +1.1 2.0 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS09715 +1.1 4.5 hypothetical protein compare
HMPREF1058_RS11155 +1.1 4.8 PD-(D/E)XK nuclease domain-containing protein compare
HMPREF1058_RS05940 +1.1 2.4 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
HMPREF1058_RS06945 +1.1 1.2 tRNA-Thr compare
HMPREF1058_RS18415 +1.1 1.2 VOC family protein compare
HMPREF1058_RS14300 +1.1 3.9 rRNA cytosine-C5-methyltransferase compare
HMPREF1058_RS06375 +1.1 3.3 glutaminase A compare
HMPREF1058_RS09985 +1.1 1.7 hypothetical protein compare
HMPREF1058_RS18890 +1.1 2.8 DUF3127 domain-containing protein compare
HMPREF1058_RS02335 +1.0 2.0 hypothetical protein compare
HMPREF1058_RS05030 +1.0 3.7 M23 family metallopeptidase compare
HMPREF1058_RS02765 +1.0 3.1 insulinase family protein compare
HMPREF1058_RS10240 +1.0 4.0 phage portal protein compare
HMPREF1058_RS03690 +1.0 1.6 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS14750 +1.0 1.8 hypothetical protein compare
HMPREF1058_RS11745 +1.0 3.0 WbqC family protein compare
HMPREF1058_RS17370 +1.0 1.9 UpxY family transcription antiterminator compare
HMPREF1058_RS06355 +1.0 4.4 threonine ammonia-lyase compare
HMPREF1058_RS10800 +1.0 2.3 RNA polymerase sigma-70 factor compare
HMPREF1058_RS05355 +1.0 1.9 helix-turn-helix domain-containing protein compare
HMPREF1058_RS14360 +1.0 1.8 DUF1295 domain-containing protein compare
HMPREF1058_RS16430 +1.0 4.0 FecR domain-containing protein compare
HMPREF1058_RS08290 +1.0 2.4 nucleoside-diphosphate kinase compare
HMPREF1058_RS01235 +1.0 4.6 phosphoserine phosphatase SerB compare
HMPREF1058_RS17175 +1.0 2.2 MarC family protein compare
HMPREF1058_RS17745 +1.0 2.7 hypothetical protein compare
HMPREF1058_RS02340 +1.0 5.6 RNA degradosome polyphosphate kinase compare
HMPREF1058_RS19120 +1.0 1.0 hypothetical protein compare
HMPREF1058_RS04555 +1.0 2.2 YqaJ viral recombinase family protein compare
HMPREF1058_RS05805 +1.0 4.8 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
HMPREF1058_RS03490 +1.0 2.6 glycosyltransferase family 4 protein compare
HMPREF1058_RS01625 +1.0 1.4 hypothetical protein compare
HMPREF1058_RS16255 +1.0 1.7 isochorismate synthase compare
HMPREF1058_RS18785 +1.0 3.8 MBL fold metallo-hydrolase compare
HMPREF1058_RS17860 +1.0 1.8 oligopeptide transporter, OPT family compare
HMPREF1058_RS09155 +1.0 3.1 acyl-CoA thioesterase compare
HMPREF1058_RS06490 +0.9 3.2 YjbH domain-containing protein compare
HMPREF1058_RS02120 +0.9 3.9 PCMD domain-containing protein compare
HMPREF1058_RS06055 +0.9 4.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HMPREF1058_RS07855 +0.9 2.7 6-bladed beta-propeller compare
HMPREF1058_RS15615 +0.9 3.6 DUF4468 domain-containing protein compare
HMPREF1058_RS16420 +0.9 4.1 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS21725 +0.9 2.9 hypothetical protein compare
HMPREF1058_RS16675 +0.9 3.8 DUF1282 family protein compare
HMPREF1058_RS05300 +0.9 1.3 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS04410 +0.9 1.3 porin family protein compare
HMPREF1058_RS07975 +0.9 5.1 family 10 glycosylhydrolase compare
HMPREF1058_RS01805 +0.9 2.2 DUF4286 family protein compare
HMPREF1058_RS11815 +0.9 4.7 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS17655 +0.9 2.5 AbgT family transporter compare
HMPREF1058_RS04670 +0.9 1.8 fluoride efflux transporter CrcB compare
HMPREF1058_RS0119230 +0.9 1.7 Txe/YoeB family addiction module toxin compare
HMPREF1058_RS07735 +0.9 2.3 chloride channel protein compare
HMPREF1058_RS11275 +0.9 1.8 hypothetical protein compare
HMPREF1058_RS18405 +0.9 3.6 hypothetical protein compare
HMPREF1058_RS01830 +0.9 1.8 DUF882 domain-containing protein compare
HMPREF1058_RS21210 +0.9 2.0 hypothetical protein compare
HMPREF1058_RS05725 +0.9 2.3 hypothetical protein compare
HMPREF1058_RS03760 +0.9 3.5 UDP-N-acetyl glucosamine 2-epimerase compare


Specific Phenotypes

For 22 genes in this experiment

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono in Phocaeicola vulgatus CL09T03C04

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono across organisms