Experiment set3S352 for Phocaeicola vulgatus CL09T03C04
diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9
Group: mouseMedia: + diet=StandardDiet; sample=FecalPellet; inoculation=Mono
Culturing: Bvulgatus_CL09T03C04_ML5
By: Surya Tripathi on 12/1/24
Specific Phenotypes
For 3 genes in this experiment
For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono in Phocaeicola vulgatus CL09T03C04
For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| DNA repair, bacterial MutL-MutS system | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glycolysis / Gluconeogenesis
- Pyruvate metabolism
- Propanoate metabolism
- Reductive carboxylate cycle (CO2 fixation)
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| acetate conversion to acetyl-CoA | 1 | 1 | 1 |
| acetate and ATP formation from acetyl-CoA III | 1 | 1 | 1 |
| superpathway of acetate utilization and formation | 3 | 3 | 1 |
| ethanol degradation II | 3 | 2 | 1 |
| L-isoleucine biosynthesis V | 3 | 2 | 1 |
| ethanol degradation IV | 3 | 1 | 1 |
| ethanol degradation III | 3 | 1 | 1 |
| chitin deacetylation | 4 | 1 | 1 |
| superpathway of bitter acids biosynthesis | 18 | 3 | 3 |
| colupulone and cohumulone biosynthesis | 6 | 1 | 1 |
| adlupulone and adhumulone biosynthesis | 6 | 1 | 1 |
| lupulone and humulone biosynthesis | 6 | 1 | 1 |
| reductive glycine pathway of autotrophic CO2 fixation | 9 | 7 | 1 |
| cis-geranyl-CoA degradation | 9 | 1 | 1 |