Experiment set3S344 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS11040 -7.6 -7.4 polysaccharide deacetylase family protein compare
HMPREF1058_RS12490 -7.5 -4.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS09675 -7.4 -6.5 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS14610 -7.2 -8.6 adenylosuccinate synthase compare
HMPREF1058_RS15565 -7.0 -21.5 hypothetical protein compare
HMPREF1058_RS15075 -6.9 -8.3 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS10840 -6.8 -3.8 hypothetical protein compare
HMPREF1058_RS16760 -6.2 -4.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS10710 -6.2 -17.8 DUF3108 domain-containing protein compare
HMPREF1058_RS06195 -6.1 -5.9 diaminopimelate decarboxylase compare
HMPREF1058_RS06875 -6.0 -10.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HMPREF1058_RS14770 -5.8 -8.9 prephenate dehydrogenase compare
HMPREF1058_RS10995 -5.8 -12.4 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS06870 -5.7 -20.5 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS02405 -5.7 -22.5 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS07955 -5.6 -20.9 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS11730 -5.6 -2.7 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS02410 -5.5 -24.7 methylmalonyl-CoA mutase compare
HMPREF1058_RS06560 -5.5 -3.8 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS16500 -5.4 -6.4 OadG family protein compare
HMPREF1058_RS08840 -5.3 -17.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS12115 -5.2 -19.0 acetylglutamate kinase compare
HMPREF1058_RS09180 -5.2 -10.5 hypothetical protein compare
HMPREF1058_RS02975 -5.1 -3.5 hypothetical protein compare
HMPREF1058_RS16505 -5.1 -8.4 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS16620 -5.1 -11.7 GGGtGRT protein compare
HMPREF1058_RS04375 -5.0 -9.5 carbon-nitrogen hydrolase compare
HMPREF1058_RS12105 -4.9 -5.9 shikimate kinase compare
HMPREF1058_RS04070 -4.8 -3.3 hypothetical protein compare
HMPREF1058_RS14785 -4.8 -11.8 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS16495 -4.7 -4.6 biotin/lipoyl-binding protein compare
HMPREF1058_RS06310 -4.7 -4.6 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS07655 -4.7 -1.9 hypothetical protein compare
HMPREF1058_RS09185 -4.7 -6.5 DUF4252 domain-containing protein compare
HMPREF1058_RS06600 -4.5 -5.3 DedA family protein compare
HMPREF1058_RS04065 -4.5 -2.1 VWA domain-containing protein compare
HMPREF1058_RS04080 -4.5 -4.3 AAA family ATPase compare
HMPREF1058_RS06380 -4.4 -9.3 copper homeostasis protein CutC compare
HMPREF1058_RS12780 -4.4 -18.7 M20 family metallo-hydrolase compare
HMPREF1058_RS14200 -4.4 -21.0 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS10835 -4.4 -10.1 UDP-galactopyranose mutase compare
HMPREF1058_RS13970 -4.4 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS14005 -4.3 -4.2 3-dehydroquinate synthase compare
HMPREF1058_RS13655 -4.2 -19.8 cardiolipin synthase compare
HMPREF1058_RS16730 -4.2 -4.9 chorismate synthase compare
HMPREF1058_RS11310 -4.2 -8.4 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS06085 -4.2 -23.0 hypothetical protein compare
HMPREF1058_RS14035 -4.1 -2.5 hypothetical protein compare
HMPREF1058_RS09590 -4.1 -13.1 hypothetical protein compare
HMPREF1058_RS06060 -4.0 -11.7 YegS/Rv2252/BmrU family lipid kinase compare
HMPREF1058_RS18265 -4.0 -3.9 aspartate 1-decarboxylase compare
HMPREF1058_RS09750 -4.0 -12.0 glycosyltransferase compare
HMPREF1058_RS03510 -3.9 -6.0 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS16625 -3.9 -9.2 hypothetical protein compare
HMPREF1058_RS14550 -3.9 -19.9 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS07670 -3.9 -3.0 HAMP domain-containing histidine kinase compare
HMPREF1058_RS01745 -3.8 -7.7 PorT family protein compare
HMPREF1058_RS08835 -3.8 -14.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS08535 -3.8 -3.6 elongation factor P compare
HMPREF1058_RS05140 -3.8 -2.6 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS01655 -3.8 -10.5 DUF4296 domain-containing protein compare
HMPREF1058_RS00595 -3.7 -6.5 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS08295 -3.7 -9.4 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS04050 -3.7 -5.0 protein BatD compare
HMPREF1058_RS15395 -3.6 -2.5 dihydroorotase compare
HMPREF1058_RS14790 -3.6 -13.6 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS11890 -3.6 -3.5 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS04075 -3.6 -4.1 DUF58 domain-containing protein compare
HMPREF1058_RS02095 -3.5 -11.7 efflux transporter outer membrane subunit compare
HMPREF1058_RS14565 -3.5 -19.6 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS03085 -3.5 -2.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS14220 -3.4 -6.7 energy transducer TonB compare
HMPREF1058_RS14660 -3.4 -11.2 TolC family protein compare
HMPREF1058_RS11915 -3.4 -1.2 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS07420 -3.4 -19.7 exo-alpha-sialidase compare
HMPREF1058_RS03970 -3.4 -2.3 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS13595 -3.3 -15.8 phosphotransferase compare
HMPREF1058_RS16510 -3.3 -5.8 methylmalonyl-CoA epimerase compare
HMPREF1058_RS14590 -3.3 -4.3 AraC family transcriptional regulator compare
HMPREF1058_RS14795 -3.3 -12.3 prephenate dehydratase compare
HMPREF1058_RS11490 -3.3 -7.6 redox-regulated ATPase YchF compare
HMPREF1058_RS09620 -3.2 -6.7 hypothetical protein compare
HMPREF1058_RS06190 -3.2 -8.9 aspartate kinase compare
HMPREF1058_RS16750 -3.2 -3.1 shikimate dehydrogenase compare
HMPREF1058_RS17885 -3.2 -20.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS08025 -3.2 -10.2 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS02170 -3.2 -12.7 hypothetical protein compare
HMPREF1058_RS14655 -3.1 -16.7 CusA/CzcA family heavy metal efflux RND transporter compare
HMPREF1058_RS03535 -3.1 -2.1 UvrD-helicase domain-containing protein compare
HMPREF1058_RS18635 -3.1 -2.3 PepSY-like domain-containing protein compare
HMPREF1058_RS16755 -3.1 -3.4 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS14740 -3.1 -9.2 iron ABC transporter permease compare
HMPREF1058_RS17155 -3.1 -4.6 dCMP deaminase family protein compare
HMPREF1058_RS00560 -3.1 -4.0 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS09445 -3.1 -2.0 tyrosine-type recombinase/integrase compare
HMPREF1058_RS07040 -3.1 -12.5 tetratricopeptide repeat protein compare
HMPREF1058_RS12070 -3.0 -6.2 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS02100 -3.0 -15.2 efflux RND transporter permease subunit compare
HMPREF1058_RS18660 -3.0 -1.2 hypothetical protein compare
HMPREF1058_RS15375 -3.0 -2.3 DUF4369 domain-containing protein compare
HMPREF1058_RS11930 -3.0 -6.5 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS02105 -2.9 -10.4 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS17060 -2.9 -10.7 HAD family hydrolase compare
HMPREF1058_RS17050 -2.9 -10.6 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS14745 -2.9 -13.4 ABC transporter substrate-binding protein compare
HMPREF1058_RS09585 -2.8 -17.3 argininosuccinate lyase compare
HMPREF1058_RS14555 -2.8 -3.7 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS09685 -2.8 -16.4 tetratricopeptide repeat protein compare
HMPREF1058_RS09745 -2.8 -12.8 glycosyltransferase compare
HMPREF1058_RS18205 -2.8 -6.7 ferrous iron transport protein B compare
HMPREF1058_RS11375 -2.8 -1.5 TIGR00730 family Rossman fold protein compare
HMPREF1058_RS09460 -2.8 -12.7 gamma carbonic anhydrase family protein compare
HMPREF1058_RS10270 -2.7 -4.8 hypothetical protein compare
HMPREF1058_RS17045 -2.7 -5.1 hypothetical protein compare
HMPREF1058_RS01800 -2.7 -4.7 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS05145 -2.7 -10.4 ATP-binding protein compare
HMPREF1058_RS00625 -2.7 -13.4 MFS transporter compare
HMPREF1058_RS00590 -2.7 -8.2 hypothetical protein compare
HMPREF1058_RS00205 -2.7 -15.3 cation:proton antiporter compare
HMPREF1058_RS07390 -2.7 -16.2 cyclically-permuted mutarotase family protein compare
HMPREF1058_RS07635 -2.7 -4.2 50S ribosomal protein L9 compare
HMPREF1058_RS10275 -2.7 -13.5 RNA-splicing ligase RtcB compare
HMPREF1058_RS17040 -2.7 -7.7 NTP transferase domain-containing protein compare
HMPREF1058_RS17080 -2.7 -1.5 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS10295 -2.7 -2.6 hypothetical protein compare
HMPREF1058_RS08640 -2.7 -4.8 acetylornithine carbamoyltransferase compare
HMPREF1058_RS11215 -2.6 -5.7 DUF4294 domain-containing protein compare
HMPREF1058_RS07720 -2.6 -9.3 sigma-70 family RNA polymerase sigma factor compare
HMPREF1058_RS14650 -2.6 -10.9 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS14490 -2.6 -16.7 S9 family peptidase compare
HMPREF1058_RS17130 -2.6 -3.2 tetratricopeptide repeat protein compare
HMPREF1058_RS10850 -2.5 -10.5 glycosyltransferase family 2 protein compare
HMPREF1058_RS14835 -2.5 -7.3 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS10965 -2.5 -10.1 cation transporter compare
HMPREF1058_RS06410 -2.5 -5.3 elongation factor 4 compare
HMPREF1058_RS12575 -2.5 -17.5 mannose-1-phosphate guanylyltransferase compare
HMPREF1058_RS15520 -2.5 -4.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS10910 -2.4 -17.9 glycosyltransferase family 39 protein compare
HMPREF1058_RS08855 -2.4 -16.0 arginine repressor compare
HMPREF1058_RS08060 -2.4 -7.3 hypothetical protein compare
HMPREF1058_RS14120 -2.4 -13.5 DUF349 domain-containing protein compare
HMPREF1058_RS06040 -2.4 -9.9 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS06640 -2.4 -11.7 chain-length determining protein compare
HMPREF1058_RS14075 -2.4 -4.4 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS07190 -2.4 -7.2 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS04005 -2.4 -12.8 patatin-like phospholipase family protein compare
HMPREF1058_RS14755 -2.4 -15.0 hypothetical protein compare
HMPREF1058_RS03530 -2.4 -1.6 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS16845 -2.4 -9.7 SurA N-terminal domain-containing protein compare
HMPREF1058_RS09000 -2.4 -9.5 FecR domain-containing protein compare
HMPREF1058_RS18695 -2.3 -2.5 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS13965 -2.3 -2.8 hypothetical protein compare
HMPREF1058_RS04040 -2.3 -9.1 phosphatase PAP2 family protein compare
HMPREF1058_RS11920 -2.3 -6.2 DUF2975 domain-containing protein compare
HMPREF1058_RS18685 -2.3 -6.3 F0F1 ATP synthase subunit delta compare
HMPREF1058_RS09610 -2.3 -11.4 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS10900 -2.3 -9.6 glycosyltransferase compare
HMPREF1058_RS10525 -2.3 -16.6 carbohydrate binding domain-containing protein compare
HMPREF1058_RS10255 -2.3 -3.5 hypothetical protein compare
HMPREF1058_RS15965 -2.2 -5.8 recombinase RecA compare
HMPREF1058_RS11205 -2.2 -2.0 radical SAM protein compare
HMPREF1058_RS14225 -2.2 -8.4 polyprenyl synthetase family protein compare
HMPREF1058_RS04025 -2.2 -10.8 hypothetical protein compare
HMPREF1058_RS14735 -2.2 -8.0 ABC transporter ATP-binding protein compare
HMPREF1058_RS12505 -2.2 -1.5 RNA polymerase factor sigma-54 compare
HMPREF1058_RS06595 -2.2 -8.2 hypothetical protein compare
HMPREF1058_RS10460 -2.2 -14.7 NAD-dependent epimerase/dehydratase family protein compare
HMPREF1058_RS07295 -2.2 -10.2 AGE family epimerase/isomerase compare
HMPREF1058_RS06645 -2.2 -14.7 SLBB domain-containing protein compare
HMPREF1058_RS17150 -2.2 -16.0 S41 family peptidase compare
HMPREF1058_RS03805 -2.2 -8.7 PorT family protein compare
HMPREF1058_RS14285 -2.2 -3.6 DUF5056 domain-containing protein compare
HMPREF1058_RS08845 -2.1 -10.3 argininosuccinate synthase compare
HMPREF1058_RS04035 -2.1 -2.8 hypothetical protein compare
HMPREF1058_RS04015 -2.1 -9.3 ATP-dependent Clp protease ATP-binding subunit compare
HMPREF1058_RS15750 -2.1 -10.5 glucosaminidase domain-containing protein compare
HMPREF1058_RS03915 -2.1 -10.8 hypothetical protein compare
HMPREF1058_RS14465 -2.1 -3.8 enoyl-ACP reductase compare
HMPREF1058_RS14645 -2.1 -12.2 hypothetical protein compare
HMPREF1058_RS17070 -2.1 -12.8 ribokinase compare
HMPREF1058_RS18680 -2.1 -6.3 F0F1 ATP synthase subunit B compare
HMPREF1058_RS01690 -2.1 -10.1 sugar kinase compare
HMPREF1058_RS15920 -2.0 -2.3 hypothetical protein compare
HMPREF1058_RS01650 -2.0 -8.1 hypothetical protein compare
HMPREF1058_RS17775 -2.0 -7.1 hypothetical protein compare
HMPREF1058_RS07300 -2.0 -8.5 MFS transporter compare
HMPREF1058_RS07005 -2.0 -13.2 alpha-N-arabinofuranosidase compare
HMPREF1058_RS09680 -2.0 -4.4 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS01460 -2.0 -3.4 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS07960 -2.0 -12.1 response regulator compare
HMPREF1058_RS17170 -2.0 -8.6 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS14215 -2.0 -4.6 (d)CMP kinase compare
HMPREF1058_RS07415 -2.0 -14.2 family 20 glycosylhydrolase compare
HMPREF1058_RS03800 -2.0 -9.9 serine hydroxymethyltransferase compare
HMPREF1058_RS07290 -2.0 -7.3 dihydrodipicolinate synthase family protein compare
HMPREF1058_RS08995 -2.0 -13.0 GH92 family glycosyl hydrolase compare
HMPREF1058_RS02215 -2.0 -7.5 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
HMPREF1058_RS18670 -2.0 -11.6 F0F1 ATP synthase subunit A compare
HMPREF1058_RS13350 -2.0 -9.1 Trk system potassium transporter TrkA compare
HMPREF1058_RS11925 -2.0 -3.6 DUF2975 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in mouse experiments

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono across organisms