Experiment set3S344 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS07310 +5.7 34.4 glucosamine-6-phosphate deaminase compare
HMPREF1058_RS02220 +4.8 21.7 branched-chain amino acid aminotransferase compare
HMPREF1058_RS14020 +4.6 31.7 cardiolipin synthase compare
HMPREF1058_RS17815 +4.3 26.5 MFS transporter compare
HMPREF1058_RS16830 +4.3 21.2 acyl-ACP thioesterase compare
HMPREF1058_RS16690 +3.5 18.4 NTP transferase domain-containing protein compare
HMPREF1058_RS15435 +3.4 21.0 hypothetical protein compare
HMPREF1058_RS15460 +3.4 18.1 amidohydrolase compare
HMPREF1058_RS02495 +3.1 17.2 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS02485 +3.1 18.5 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS02480 +3.0 15.1 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS16515 +2.9 16.3 GNAT family N-acetyltransferase compare
HMPREF1058_RS16815 +2.6 7.3 dihydroxy-acid dehydratase compare
HMPREF1058_RS21310 +2.5 6.1 hypothetical protein compare
HMPREF1058_RS16820 +2.4 8.6 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS02800 +2.1 10.3 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS18570 +2.1 9.7 GNAT family N-acetyltransferase compare
HMPREF1058_RS11825 +2.0 6.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS03200 +2.0 9.3 V-type ATP synthase subunit K compare
HMPREF1058_RS10705 +2.0 12.0 hypothetical protein compare
HMPREF1058_RS10860 +1.9 13.4 glycosyltransferase family 8 protein compare
HMPREF1058_RS10890 +1.8 8.9 glycosyltransferase family 2 protein compare
HMPREF1058_RS02250 +1.7 12.9 hypothetical protein compare
HMPREF1058_RS10885 +1.6 10.9 glycosyltransferase compare
HMPREF1058_RS03180 +1.6 10.5 V-type ATP synthase subunit A compare
HMPREF1058_RS02260 +1.6 9.9 hypothetical protein compare
HMPREF1058_RS10955 +1.6 9.6 phosphatase PAP2 family protein compare
HMPREF1058_RS03170 +1.5 8.1 hypothetical protein compare
HMPREF1058_RS11880 +1.5 11.5 hypothetical protein compare
HMPREF1058_RS10875 +1.5 8.7 glycosyltransferase compare
HMPREF1058_RS15090 +1.4 6.5 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS15100 +1.4 5.4 hypothetical protein compare
HMPREF1058_RS06265 +1.4 8.4 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS03195 +1.4 8.6 V-type ATP synthase subunit I compare
HMPREF1058_RS14605 +1.4 2.7 transcriptional repressor compare
HMPREF1058_RS03190 +1.3 5.5 V-type ATP synthase subunit D compare
HMPREF1058_RS02255 +1.3 5.4 DUF3244 domain-containing protein compare
HMPREF1058_RS03185 +1.3 8.8 V-type ATP synthase subunit B compare
HMPREF1058_RS10815 +1.3 5.2 DUF4249 domain-containing protein compare
HMPREF1058_RS05200 +1.3 5.6 MaoC family dehydratase compare
HMPREF1058_RS16255 +1.2 5.0 isochorismate synthase compare
HMPREF1058_RS05035 +1.2 7.6 C69 family dipeptidase compare
HMPREF1058_RS17370 +1.2 4.7 UpxY family transcription antiterminator compare
HMPREF1058_RS02245 +1.1 2.8 cytidylate kinase-like family protein compare
HMPREF1058_RS15080 +1.1 5.4 glycoside hydrolase family 97 protein compare
HMPREF1058_RS05930 +1.1 5.6 MFS transporter compare
HMPREF1058_RS11270 +1.1 7.5 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS04545 +1.0 3.3 hypothetical protein compare
HMPREF1058_RS17015 +1.0 3.8 SpoIID/LytB domain-containing protein compare
HMPREF1058_RS15525 +1.0 3.4 hypothetical protein compare
HMPREF1058_RS01640 +1.0 7.6 BamA/TamA family outer membrane protein compare
HMPREF1058_RS02490 +1.0 2.4 four helix bundle protein compare
HMPREF1058_RS01820 +1.0 2.5 hypothetical protein compare
HMPREF1058_RS08040 +1.0 1.4 HD domain-containing protein compare
HMPREF1058_RS13425 +1.0 3.2 HU family DNA-binding protein compare
HMPREF1058_RS03175 +1.0 4.3 DUF2764 domain-containing protein compare
HMPREF1058_RS05105 +1.0 2.1 hypothetical protein compare
HMPREF1058_RS04430 +0.9 5.0 alpha-1,2-fucosyltransferase compare
HMPREF1058_RS04365 +0.9 7.7 translocation/assembly module TamB compare
HMPREF1058_RS05955 +0.9 5.3 hypothetical protein compare
HMPREF1058_RS0119260 +0.9 1.3 hypothetical protein compare
HMPREF1058_RS10230 +0.9 1.1 hypothetical protein compare
HMPREF1058_RS06355 +0.9 5.0 threonine ammonia-lyase compare
HMPREF1058_RS10805 +0.9 4.0 FecR family protein compare
HMPREF1058_RS06180 +0.9 3.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS05805 +0.9 5.8 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
HMPREF1058_RS04600 +0.9 1.8 hypothetical protein compare
HMPREF1058_RS02085 +0.9 4.8 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS19025 +0.9 1.7 hypothetical protein compare
HMPREF1058_RS18505 +0.9 1.1 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS14065 +0.9 5.6 lytic transglycosylase domain-containing protein compare
HMPREF1058_RS06175 +0.9 4.7 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS05945 +0.8 5.8 DUF4836 family protein compare
HMPREF1058_RS21575 +0.8 1.6 mobilization protein compare
HMPREF1058_RS07945 +0.8 3.1 DUF4924 family protein compare
HMPREF1058_RS07840 +0.8 1.4 hypothetical protein compare
HMPREF1058_RS21695 +0.8 1.5 hypothetical protein compare
HMPREF1058_RS13065 +0.8 4.7 hypothetical protein compare
HMPREF1058_RS15025 +0.8 5.0 FecR family protein compare
HMPREF1058_RS01235 +0.8 3.9 phosphoserine phosphatase SerB compare
HMPREF1058_RS04950 +0.8 1.4 hypothetical protein compare
HMPREF1058_RS16250 +0.8 5.3 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS11840 +0.8 6.2 hypothetical protein compare
HMPREF1058_RS17285 +0.8 4.5 glycosyltransferase compare
HMPREF1058_RS16225 +0.8 1.2 DUF4250 domain-containing protein compare
HMPREF1058_RS07245 +0.8 1.7 Rne/Rng family ribonuclease compare
HMPREF1058_RS06375 +0.7 2.4 glutaminase A compare
HMPREF1058_RS07285 +0.7 4.5 ROK family transcriptional regulator compare
HMPREF1058_RS11830 +0.7 5.5 hypothetical protein compare
HMPREF1058_RS05185 +0.7 5.0 hypothetical protein compare
HMPREF1058_RS21725 +0.7 2.4 hypothetical protein compare
HMPREF1058_RS07205 +0.7 2.6 type I asparaginase compare
HMPREF1058_RS20490 +0.7 2.0 RNA polymerase subunit sigma-70 compare
HMPREF1058_RS16675 +0.7 4.0 DUF1282 family protein compare
HMPREF1058_RS0120025 +0.7 4.0 DUF975 family protein compare
HMPREF1058_RS03485 +0.7 2.7 RloB domain-containing protein compare
HMPREF1058_RS02320 +0.7 2.7 hypothetical protein compare
HMPREF1058_RS07615 +0.7 2.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB compare
HMPREF1058_RS06945 +0.7 1.0 tRNA-Thr compare
HMPREF1058_RS0119640 +0.7 3.1 hypothetical protein compare
HMPREF1058_RS18940 +0.7 0.9 hypothetical protein compare
HMPREF1058_RS0119615 +0.7 1.4 hypothetical protein compare
HMPREF1058_RS15430 +0.7 4.9 aspartate-alanine antiporter compare
HMPREF1058_RS08290 +0.7 3.0 nucleoside-diphosphate kinase compare
HMPREF1058_RS15095 +0.7 3.3 hypothetical protein compare
HMPREF1058_RS12990 +0.7 1.4 hypothetical protein compare
HMPREF1058_RS03690 +0.7 2.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS03275 +0.7 1.8 hypothetical protein compare
HMPREF1058_RS21210 +0.7 1.3 hypothetical protein compare
HMPREF1058_RS12640 +0.7 2.7 hypothetical protein compare
HMPREF1058_RS04515 +0.7 1.1 hypothetical protein compare
HMPREF1058_RS02530 +0.7 2.8 GxxExxY protein compare
HMPREF1058_RS07340 +0.7 1.8 HU family DNA-binding protein compare
HMPREF1058_RS09665 +0.7 2.0 class I SAM-dependent methyltransferase compare
HMPREF1058_RS09240 +0.6 3.7 type I methionyl aminopeptidase compare
HMPREF1058_RS13640 +0.6 2.9 hypothetical protein compare
HMPREF1058_RS21475 +0.6 0.8 smalltalk protein compare
HMPREF1058_RS17870 +0.6 3.0 metallophosphoesterase compare
HMPREF1058_RS04560 +0.6 1.3 hypothetical protein compare
HMPREF1058_RS08765 +0.6 4.9 AMP-binding protein compare
HMPREF1058_RS16825 +0.6 1.3 acetolactate synthase small subunit compare
HMPREF1058_RS04730 +0.6 2.0 YbbR-like domain-containing protein compare
HMPREF1058_RS15085 +0.6 3.8 TonB-dependent receptor compare
HMPREF1058_RS11015 +0.6 4.8 hypothetical protein compare
HMPREF1058_RS10765 +0.6 3.5 ribonuclease III compare
HMPREF1058_RS16420 +0.6 4.4 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS06250 +0.6 4.2 AMP-binding protein compare
HMPREF1058_RS13060 +0.6 1.9 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS06165 +0.6 2.5 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS18890 +0.6 2.0 DUF3127 domain-containing protein compare
HMPREF1058_RS09895 +0.6 2.8 DUF4141 domain-containing protein compare
HMPREF1058_RS10650 +0.6 1.8 hypothetical protein compare
HMPREF1058_RS05950 +0.6 2.8 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS06260 +0.6 2.5 DUF3943 domain-containing protein compare
HMPREF1058_RS01720 +0.6 3.2 lysine exporter LysO family protein compare
HMPREF1058_RS16520 +0.6 2.1 nitroreductase family protein compare
HMPREF1058_RS10305 +0.6 2.3 hypothetical protein compare
HMPREF1058_RS04445 +0.6 0.8 porin family protein compare
HMPREF1058_RS05215 +0.6 3.7 GtrA family protein compare
HMPREF1058_RS15995 +0.6 2.4 helix-turn-helix domain-containing protein compare
HMPREF1058_RS01065 +0.6 2.0 hypothetical protein compare
HMPREF1058_RS17035 +0.6 2.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS15615 +0.6 3.0 DUF4468 domain-containing protein compare
HMPREF1058_RS07370 +0.6 4.1 N-acetylglucosamine-6-phosphate deacetylase compare
HMPREF1058_RS21050 +0.6 1.3 transposase compare
HMPREF1058_RS05695 +0.6 1.2 helix-turn-helix domain-containing protein compare
HMPREF1058_RS18925 +0.6 2.7 DEAD/DEAH box helicase compare
HMPREF1058_RS07585 +0.6 2.7 NADPH-dependent oxidoreductase compare
HMPREF1058_RS04115 +0.6 1.2 CinA family protein compare
HMPREF1058_RS01250 +0.6 3.1 DUF4738 domain-containing protein compare
HMPREF1058_RS10640 +0.6 2.5 outer membrane lipoprotein carrier protein LolA compare
HMPREF1058_RS10120 +0.6 0.8 hypothetical protein compare
HMPREF1058_RS16280 +0.6 1.5 MarR family transcriptional regulator compare
HMPREF1058_RS04740 +0.6 2.7 DUF5606 domain-containing protein compare
HMPREF1058_RS05900 +0.6 3.7 autotransporter outer membrane beta-barrel domain-containing protein compare
HMPREF1058_RS21570 +0.6 1.0 hypothetical protein compare
HMPREF1058_RS02615 +0.6 2.2 [FeFe] hydrogenase H-cluster radical SAM maturase HydE compare
HMPREF1058_RS16695 +0.5 2.2 phosphotransferase compare
HMPREF1058_RS07735 +0.5 2.0 chloride channel protein compare
HMPREF1058_RS0120135 +0.5 1.9 hypothetical protein compare
HMPREF1058_RS02935 +0.5 3.7 sulfotransferase compare
HMPREF1058_RS10810 +0.5 2.4 TonB-dependent receptor compare
HMPREF1058_RS14365 +0.5 3.3 NADH:flavin oxidoreductase compare
HMPREF1058_RS03250 +0.5 3.1 hypothetical protein compare
HMPREF1058_RS18870 +0.5 0.7 hypothetical protein compare
HMPREF1058_RS13900 +0.5 1.3 YraN family protein compare
HMPREF1058_RS05360 +0.5 1.0 helix-turn-helix domain-containing protein compare
HMPREF1058_RS18150 +0.5 2.5 Fic family protein compare
HMPREF1058_RS13045 +0.5 1.8 hypothetical protein compare
HMPREF1058_RS15575 +0.5 2.7 DUF4421 domain-containing protein compare
HMPREF1058_RS02960 +0.5 3.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
HMPREF1058_RS14315 +0.5 2.1 thioesterase family protein compare
HMPREF1058_RS00470 +0.5 2.1 redox-sensing transcriptional repressor Rex compare
HMPREF1058_RS04410 +0.5 0.9 porin family protein compare
HMPREF1058_RS18565 +0.5 1.1 hypothetical protein compare
HMPREF1058_RS07165 +0.5 1.6 YtxH domain-containing protein compare
HMPREF1058_RS01225 +0.5 2.9 HAD family phosphatase compare
HMPREF1058_RS15895 +0.5 1.7 transcriptional repressor compare
HMPREF1058_RS09715 +0.5 2.3 hypothetical protein compare
HMPREF1058_RS06345 +0.5 2.0 Fe-S cluster domain-containing protein compare
HMPREF1058_RS16715 +0.5 0.9 hypothetical protein compare
HMPREF1058_RS11815 +0.5 3.5 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS07920 +0.5 2.2 DUF108 domain-containing protein compare
HMPREF1058_RS04745 +0.5 1.5 helix-turn-helix domain-containing protein compare
HMPREF1058_RS09490 +0.5 3.0 adenosine kinase compare
HMPREF1058_RS02090 +0.5 2.7 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase compare
HMPREF1058_RS00710 +0.5 2.4 hypoxanthine phosphoribosyltransferase compare
HMPREF1058_RS19140 +0.5 1.2 hypothetical protein compare
HMPREF1058_RS01535 +0.5 1.2 flavin reductase family protein compare
HMPREF1058_RS0119230 +0.5 1.5 Txe/YoeB family addiction module toxin compare
HMPREF1058_RS06055 +0.5 2.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HMPREF1058_RS07260 +0.5 2.7 hypothetical protein compare
HMPREF1058_RS06425 +0.5 1.2 winged helix-turn-helix domain-containing protein compare
HMPREF1058_RS18775 +0.5 3.1 S9 family peptidase compare
HMPREF1058_RS16485 +0.5 3.1 cyclomaltodextrinase C-terminal domain-containing protein compare
HMPREF1058_RS05355 +0.5 1.8 helix-turn-helix domain-containing protein compare
HMPREF1058_RS07465 +0.5 1.1 S26 family signal peptidase compare
HMPREF1058_RS03435 +0.5 1.7 DNA-binding protein compare
HMPREF1058_RS14300 +0.5 2.9 rRNA cytosine-C5-methyltransferase compare
HMPREF1058_RS07975 +0.5 3.0 family 10 glycosylhydrolase compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in mouse experiments

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono across organisms