Experiment set3S344 for Phocaeicola vulgatus CL09T03C04
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4
Group: mouseMedia: + diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono
Culturing: Bvulgatus_CL09T03C04_ML5
By: Surya Tripathi on 12/1/24
Specific Phenotypes
For 4 genes in this experiment
For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Galactosylceramide and Sulfatide metabolism | 1 |
| Lactose and Galactose Uptake and Utilization | 1 |
| Lactose utilization | 1 |
| Predicted carbohydrate hydrolases | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Galactose metabolism
- Other glycan degradation
- Glycosaminoglycan degradation
- Sphingolipid metabolism
- Glycosphingolipid biosynthesis - ganglio series
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| lactose degradation III | 1 | 1 | 1 |
| xyloglucan degradation II (exoglucanase) | 8 | 5 | 3 |
| β-(1,4)-mannan degradation | 7 | 4 | 1 |