Experiment set3S338 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day4

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS12490 -9.0 -3.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS09675 -8.4 -5.1 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS11040 -8.1 -5.6 polysaccharide deacetylase family protein compare
HMPREF1058_RS14610 -7.4 -5.1 adenylosuccinate synthase compare
HMPREF1058_RS15075 -7.3 -5.0 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS06875 -7.1 -4.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HMPREF1058_RS08025 -6.8 -4.7 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS07955 -6.7 -8.0 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS10995 -6.6 -4.5 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS06870 -6.5 -15.8 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS14770 -6.3 -6.1 prephenate dehydrogenase compare
HMPREF1058_RS16760 -6.2 -4.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS06195 -6.1 -4.2 diaminopimelate decarboxylase compare
HMPREF1058_RS01460 -6.1 -3.0 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS13655 -6.1 -19.4 cardiolipin synthase compare
HMPREF1058_RS16500 -5.8 -4.0 OadG family protein compare
HMPREF1058_RS10840 -5.7 -3.8 hypothetical protein compare
HMPREF1058_RS16625 -5.7 -8.6 hypothetical protein compare
HMPREF1058_RS11730 -5.6 -2.4 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS14785 -5.5 -9.9 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS09180 -5.5 -9.9 hypothetical protein compare
HMPREF1058_RS16505 -5.4 -6.4 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS06560 -5.4 -6.4 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS02410 -5.3 -25.4 methylmalonyl-CoA mutase compare
HMPREF1058_RS16495 -5.2 -3.5 biotin/lipoyl-binding protein compare
HMPREF1058_RS16620 -5.1 -10.9 GGGtGRT protein compare
HMPREF1058_RS03000 -5.0 -12.1 IMP dehydrogenase compare
HMPREF1058_RS04375 -5.0 -10.2 carbon-nitrogen hydrolase compare
HMPREF1058_RS06325 -4.9 -3.4 electron transport complex subunit E compare
HMPREF1058_RS06600 -4.9 -3.4 DedA family protein compare
HMPREF1058_RS15435 -4.9 -11.3 hypothetical protein compare
HMPREF1058_RS02405 -4.9 -23.1 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS04070 -4.8 -3.3 hypothetical protein compare
HMPREF1058_RS06310 -4.8 -3.3 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS07655 -4.7 -1.6 hypothetical protein compare
HMPREF1058_RS04075 -4.6 -3.2 DUF58 domain-containing protein compare
HMPREF1058_RS16730 -4.5 -3.1 chorismate synthase compare
HMPREF1058_RS08840 -4.5 -17.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS09185 -4.5 -7.5 DUF4252 domain-containing protein compare
HMPREF1058_RS14005 -4.4 -3.0 3-dehydroquinate synthase compare
HMPREF1058_RS06380 -4.4 -9.0 copper homeostasis protein CutC compare
HMPREF1058_RS01665 -4.4 -4.0 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS03510 -4.4 -4.2 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS08535 -4.4 -2.7 elongation factor P compare
HMPREF1058_RS13970 -4.4 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS12070 -4.3 -4.2 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS02975 -4.3 -3.7 hypothetical protein compare
HMPREF1058_RS12115 -4.3 -13.8 acetylglutamate kinase compare
HMPREF1058_RS06320 -4.3 -12.7 electron transport complex subunit RsxA compare
HMPREF1058_RS10710 -4.3 -17.4 DUF3108 domain-containing protein compare
HMPREF1058_RS10720 -4.2 -10.0 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS06335 -4.1 -12.8 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS04080 -4.1 -5.6 AAA family ATPase compare
HMPREF1058_RS09445 -4.1 -1.8 tyrosine-type recombinase/integrase compare
HMPREF1058_RS14035 -4.1 -2.3 hypothetical protein compare
HMPREF1058_RS06190 -4.1 -6.2 aspartate kinase compare
HMPREF1058_RS10270 -4.0 -5.3 hypothetical protein compare
HMPREF1058_RS09745 -4.0 -14.5 glycosyltransferase compare
HMPREF1058_RS07635 -4.0 -3.7 50S ribosomal protein L9 compare
HMPREF1058_RS09750 -3.9 -10.1 glycosyltransferase compare
HMPREF1058_RS12780 -3.9 -17.9 M20 family metallo-hydrolase compare
HMPREF1058_RS06340 -3.9 -8.2 electron transport complex subunit RsxC compare
HMPREF1058_RS00625 -3.9 -12.0 MFS transporter compare
HMPREF1058_RS12105 -3.8 -3.5 shikimate kinase compare
HMPREF1058_RS05140 -3.8 -2.6 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS17155 -3.8 -3.6 dCMP deaminase family protein compare
HMPREF1058_RS18265 -3.8 -3.6 aspartate 1-decarboxylase compare
HMPREF1058_RS00635 -3.7 -18.9 substrate-binding domain-containing protein compare
HMPREF1058_RS16750 -3.7 -2.4 shikimate dehydrogenase compare
HMPREF1058_RS02220 -3.7 -9.1 branched-chain amino acid aminotransferase compare
HMPREF1058_RS21520 -3.7 -1.3 hypothetical protein compare
HMPREF1058_RS06345 -3.7 -8.9 Fe-S cluster domain-containing protein compare
HMPREF1058_RS14835 -3.7 -7.6 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS04050 -3.7 -5.0 protein BatD compare
HMPREF1058_RS00595 -3.7 -5.7 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS14200 -3.6 -15.7 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS14790 -3.6 -13.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS14590 -3.6 -3.9 AraC family transcriptional regulator compare
HMPREF1058_RS04065 -3.6 -1.9 VWA domain-containing protein compare
HMPREF1058_RS17050 -3.6 -11.7 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS15395 -3.6 -2.4 dihydroorotase compare
HMPREF1058_RS06350 -3.6 -9.3 SoxR reducing system RseC family protein compare
HMPREF1058_RS17060 -3.5 -11.3 HAD family hydrolase compare
HMPREF1058_RS07670 -3.5 -2.9 HAMP domain-containing histidine kinase compare
HMPREF1058_RS17815 -3.5 -7.7 MFS transporter compare
HMPREF1058_RS04035 -3.5 -3.6 hypothetical protein compare
HMPREF1058_RS00615 -3.5 -22.5 TonB-dependent receptor compare
HMPREF1058_RS11890 -3.5 -4.1 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS17130 -3.5 -4.1 tetratricopeptide repeat protein compare
HMPREF1058_RS07745 -3.4 -15.7 N-acetylglucosamine-6-phosphate deacetylase compare
HMPREF1058_RS16845 -3.4 -7.9 SurA N-terminal domain-containing protein compare
HMPREF1058_RS03085 -3.4 -2.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS15665 -3.4 -8.2 MFS transporter compare
HMPREF1058_RS10835 -3.4 -11.5 UDP-galactopyranose mutase compare
HMPREF1058_RS03970 -3.4 -2.3 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS11915 -3.3 -1.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS11310 -3.3 -8.8 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS06040 -3.3 -9.9 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS03980 -3.3 -1.6 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS00560 -3.2 -3.7 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS01450 -3.2 -4.6 acetyl-CoA carboxylase biotin carboxylase subunit compare
HMPREF1058_RS00205 -3.2 -13.7 cation:proton antiporter compare
HMPREF1058_RS03535 -3.1 -1.9 UvrD-helicase domain-containing protein compare
HMPREF1058_RS14120 -3.1 -14.6 DUF349 domain-containing protein compare
HMPREF1058_RS09585 -3.0 -20.9 argininosuccinate lyase compare
HMPREF1058_RS04370 -3.0 -8.1 agmatine deiminase family protein compare
HMPREF1058_RS00630 -3.0 -12.2 carbohydrate kinase compare
HMPREF1058_RS11490 -3.0 -7.1 redox-regulated ATPase YchF compare
HMPREF1058_RS01800 -3.0 -4.4 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS01650 -3.0 -8.2 hypothetical protein compare
HMPREF1058_RS02880 -2.9 -17.5 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS17885 -2.9 -18.7 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS08855 -2.8 -14.1 arginine repressor compare
HMPREF1058_RS00620 -2.8 -15.6 GH32 C-terminal domain-containing protein compare
HMPREF1058_RS01745 -2.8 -8.7 PorT family protein compare
HMPREF1058_RS14215 -2.8 -4.5 (d)CMP kinase compare
HMPREF1058_RS16510 -2.8 -4.6 methylmalonyl-CoA epimerase compare
HMPREF1058_RS08295 -2.8 -9.7 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS10850 -2.7 -14.6 glycosyltransferase family 2 protein compare
HMPREF1058_RS15520 -2.7 -5.4 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS14565 -2.7 -17.2 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS04550 -2.7 -1.6 hypothetical protein compare
HMPREF1058_RS17040 -2.7 -8.2 NTP transferase domain-containing protein compare
HMPREF1058_RS18635 -2.6 -2.0 PepSY-like domain-containing protein compare
HMPREF1058_RS14465 -2.6 -2.5 enoyl-ACP reductase compare
HMPREF1058_RS17080 -2.6 -1.3 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS14550 -2.6 -16.7 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS14660 -2.6 -10.3 TolC family protein compare
HMPREF1058_RS14795 -2.6 -6.9 prephenate dehydratase compare
HMPREF1058_RS10490 -2.6 -14.4 rhomboid family intramembrane serine protease compare
HMPREF1058_RS08845 -2.6 -11.4 argininosuccinate synthase compare
HMPREF1058_RS10295 -2.6 -1.9 hypothetical protein compare
HMPREF1058_RS09590 -2.6 -7.4 hypothetical protein compare
HMPREF1058_RS10255 -2.5 -3.6 hypothetical protein compare
HMPREF1058_RS01655 -2.5 -8.3 DUF4296 domain-containing protein compare
HMPREF1058_RS05145 -2.5 -10.2 ATP-binding protein compare
HMPREF1058_RS06880 -2.5 -10.1 amidophosphoribosyltransferase compare
HMPREF1058_RS14745 -2.5 -10.1 ABC transporter substrate-binding protein compare
HMPREF1058_RS07725 -2.5 -9.2 NigD-like N-terminal domain-containing protein compare
HMPREF1058_RS02100 -2.5 -12.5 efflux RND transporter permease subunit compare
HMPREF1058_RS06085 -2.5 -17.4 hypothetical protein compare
HMPREF1058_RS06330 -2.5 -4.5 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS08640 -2.4 -3.1 acetylornithine carbamoyltransferase compare
HMPREF1058_RS06410 -2.4 -5.4 elongation factor 4 compare
HMPREF1058_RS07750 -2.4 -16.9 efflux RND transporter permease subunit compare
HMPREF1058_RS03530 -2.4 -1.5 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS14740 -2.3 -8.3 iron ABC transporter permease compare
HMPREF1058_RS17045 -2.3 -4.1 hypothetical protein compare
HMPREF1058_RS18235 -2.3 -4.1 3'-5' exonuclease compare
HMPREF1058_RS18205 -2.3 -6.6 ferrous iron transport protein B compare
HMPREF1058_RS05925 -2.3 -2.1 DUF5024 domain-containing protein compare
HMPREF1058_RS02125 -2.3 -8.7 PorT family protein compare
HMPREF1058_RS10275 -2.3 -10.1 RNA-splicing ligase RtcB compare
HMPREF1058_RS15390 -2.3 -5.2 5-methyltetrahydrofolate--homocysteine methyltransferase compare
HMPREF1058_RS14755 -2.2 -14.2 hypothetical protein compare
HMPREF1058_RS02095 -2.2 -7.2 efflux transporter outer membrane subunit compare
HMPREF1058_RS17805 -2.2 -8.5 HAD family hydrolase compare
HMPREF1058_RS15660 -2.2 -12.9 galactokinase compare
HMPREF1058_RS08995 -2.2 -14.9 GH92 family glycosyl hydrolase compare
HMPREF1058_RS14075 -2.2 -3.6 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS03800 -2.2 -8.8 serine hydroxymethyltransferase compare
HMPREF1058_RS07675 -2.2 -10.5 elongation factor G compare
HMPREF1058_RS12505 -2.2 -1.5 RNA polymerase factor sigma-54 compare
HMPREF1058_RS14285 -2.2 -3.2 DUF5056 domain-containing protein compare
HMPREF1058_RS11205 -2.2 -1.6 radical SAM protein compare
HMPREF1058_RS14220 -2.2 -5.6 energy transducer TonB compare
HMPREF1058_RS12315 -2.2 -12.5 glycoside hydrolase family 97 protein compare
HMPREF1058_RS08835 -2.1 -8.9 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS03755 -2.1 -11.7 DUF3078 domain-containing protein compare
HMPREF1058_RS17935 -2.1 -12.9 glycosyltransferase compare
HMPREF1058_RS16690 -2.1 -10.2 NTP transferase domain-containing protein compare
HMPREF1058_RS07760 -2.1 -14.2 efflux RND transporter permease subunit compare
HMPREF1058_RS03910 -2.1 -9.9 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS07765 -2.0 -9.1 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS13965 -2.0 -2.0 hypothetical protein compare
HMPREF1058_RS17775 -2.0 -6.1 hypothetical protein compare
HMPREF1058_RS07540 -2.0 -3.6 acetyltransferase compare
HMPREF1058_RS02885 -2.0 -10.1 response regulator transcription factor compare
HMPREF1058_RS07755 -2.0 -10.0 TolC family protein compare
HMPREF1058_RS09000 -2.0 -6.7 FecR domain-containing protein compare
HMPREF1058_RS14760 -2.0 -15.3 TonB-dependent receptor compare
HMPREF1058_RS16685 -2.0 -13.8 methionine synthase compare
HMPREF1058_RS07285 -2.0 -11.3 ROK family transcriptional regulator compare
HMPREF1058_RS06060 -2.0 -7.3 YegS/Rv2252/BmrU family lipid kinase compare
HMPREF1058_RS04005 -2.0 -9.7 patatin-like phospholipase family protein compare
HMPREF1058_RS12320 -1.9 -4.6 glycoside hydrolase family 13 protein compare
HMPREF1058_RS03805 -1.9 -6.4 PorT family protein compare
HMPREF1058_RS10965 -1.9 -7.9 cation transporter compare
HMPREF1058_RS10920 -1.9 -2.9 viroplasmin family protein compare
HMPREF1058_RS18685 -1.9 -5.7 F0F1 ATP synthase subunit delta compare
HMPREF1058_RS18675 -1.9 -4.6 ATP synthase F0 subunit C compare
HMPREF1058_RS11930 -1.9 -4.8 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS11925 -1.9 -2.1 DUF2975 domain-containing protein compare
HMPREF1058_RS11920 -1.9 -4.3 DUF2975 domain-containing protein compare
HMPREF1058_RS15920 -1.9 -2.0 hypothetical protein compare
HMPREF1058_RS15640 -1.8 -8.0 L-ribulose-5-phosphate 4-epimerase compare
HMPREF1058_RS11535 -1.8 -9.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS12345 -1.8 -11.3 4-alpha-glucanotransferase compare
HMPREF1058_RS14700 -1.8 -4.8 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS02710 -1.8 -3.3 transketolase compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in mouse experiments

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono across organisms