Experiment set3S338 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day4

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS15565 +3.6 22.4 hypothetical protein compare
HMPREF1058_RS15100 +2.9 5.9 hypothetical protein compare
HMPREF1058_RS15090 +2.9 7.5 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS02250 +2.5 19.5 hypothetical protein compare
HMPREF1058_RS11270 +2.5 17.0 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS16250 +2.4 11.3 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS15080 +2.4 6.0 glycoside hydrolase family 97 protein compare
HMPREF1058_RS11825 +2.2 10.0 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS10230 +2.1 2.1 hypothetical protein compare
HMPREF1058_RS04545 +2.1 6.8 hypothetical protein compare
HMPREF1058_RS02255 +2.0 9.0 DUF3244 domain-containing protein compare
HMPREF1058_RS02260 +1.8 7.0 hypothetical protein compare
HMPREF1058_RS0119645 +1.8 4.8 AAA family ATPase compare
HMPREF1058_RS14020 +1.8 13.0 cardiolipin synthase compare
HMPREF1058_RS16260 +1.8 3.1 hotdog fold thioesterase compare
HMPREF1058_RS19120 +1.7 1.5 hypothetical protein compare
HMPREF1058_RS11165 +1.6 6.0 glycoside hydrolase family 127 protein compare
HMPREF1058_RS02800 +1.6 6.6 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS11880 +1.5 11.7 hypothetical protein compare
HMPREF1058_RS02245 +1.5 2.7 cytidylate kinase-like family protein compare
HMPREF1058_RS15085 +1.4 5.6 TonB-dependent receptor compare
HMPREF1058_RS15095 +1.4 4.2 hypothetical protein compare
HMPREF1058_RS07720 +1.4 8.6 sigma-70 family RNA polymerase sigma factor compare
HMPREF1058_RS16255 +1.3 4.3 isochorismate synthase compare
HMPREF1058_RS02335 +1.2 2.2 hypothetical protein compare
HMPREF1058_RS16515 +1.2 6.5 GNAT family N-acetyltransferase compare
HMPREF1058_RS05695 +1.2 1.9 helix-turn-helix domain-containing protein compare
HMPREF1058_RS03295 +1.2 1.5 sulfur carrier protein ThiS compare
HMPREF1058_RS04430 +1.1 6.2 alpha-1,2-fucosyltransferase compare
HMPREF1058_RS02320 +1.1 2.2 hypothetical protein compare
HMPREF1058_RS10955 +1.1 6.2 phosphatase PAP2 family protein compare
HMPREF1058_RS15570 +1.1 8.5 hypothetical protein compare
HMPREF1058_RS03180 +1.1 7.0 V-type ATP synthase subunit A compare
HMPREF1058_RS10885 +1.0 6.4 glycosyltransferase compare
HMPREF1058_RS04600 +1.0 2.1 hypothetical protein compare
HMPREF1058_RS16830 +1.0 4.2 acyl-ACP thioesterase compare
HMPREF1058_RS18505 +1.0 1.2 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS10860 +1.0 7.8 glycosyltransferase family 8 protein compare
HMPREF1058_RS03170 +1.0 3.3 hypothetical protein compare
HMPREF1058_RS04950 +1.0 1.3 hypothetical protein compare
HMPREF1058_RS10890 +1.0 5.5 glycosyltransferase family 2 protein compare
HMPREF1058_RS04745 +1.0 3.0 helix-turn-helix domain-containing protein compare
HMPREF1058_RS07735 +1.0 3.5 chloride channel protein compare
HMPREF1058_RS05200 +1.0 4.7 MaoC family dehydratase compare
HMPREF1058_RS07310 +1.0 5.2 glucosamine-6-phosphate deaminase compare
HMPREF1058_RS21725 +1.0 2.5 hypothetical protein compare
HMPREF1058_RS06945 +1.0 1.2 tRNA-Thr compare
HMPREF1058_RS21380 +0.9 1.8 hypothetical protein compare
HMPREF1058_RS03200 +0.9 3.8 V-type ATP synthase subunit K compare
HMPREF1058_RS09905 +0.9 2.1 conjugative transposon protein TraK compare
HMPREF1058_RS18890 +0.9 2.3 DUF3127 domain-containing protein compare
HMPREF1058_RS03185 +0.9 6.7 V-type ATP synthase subunit B compare
HMPREF1058_RS21310 +0.9 1.6 hypothetical protein compare
HMPREF1058_RS18870 +0.9 1.2 hypothetical protein compare
HMPREF1058_RS11830 +0.9 6.8 hypothetical protein compare
HMPREF1058_RS05415 +0.9 2.4 Hsp20/alpha crystallin family protein compare
HMPREF1058_RS10705 +0.9 6.5 hypothetical protein compare
HMPREF1058_RS01530 +0.9 1.6 NAD(P)H-dependent oxidoreductase compare
HMPREF1058_RS11155 +0.8 3.2 PD-(D/E)XK nuclease domain-containing protein compare
HMPREF1058_RS10875 +0.8 5.1 glycosyltransferase compare
HMPREF1058_RS0119640 +0.8 3.8 hypothetical protein compare
HMPREF1058_RS17645 +0.8 5.9 DUF5113 domain-containing protein compare
HMPREF1058_RS17370 +0.8 3.0 UpxY family transcription antiterminator compare
HMPREF1058_RS13060 +0.8 2.3 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS07370 +0.8 5.1 N-acetylglucosamine-6-phosphate deacetylase compare
HMPREF1058_RS19025 +0.8 1.2 hypothetical protein compare
HMPREF1058_RS06265 +0.8 4.1 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS03195 +0.8 4.1 V-type ATP synthase subunit I compare
HMPREF1058_RS10815 +0.7 4.2 DUF4249 domain-containing protein compare
HMPREF1058_RS08000 +0.7 2.3 hypothetical protein compare
HMPREF1058_RS11840 +0.7 5.7 hypothetical protein compare
HMPREF1058_RS17650 +0.7 2.5 response regulator transcription factor compare
HMPREF1058_RS01625 +0.7 1.0 hypothetical protein compare
HMPREF1058_RS10455 +0.7 3.9 glycine C-acetyltransferase compare
HMPREF1058_RS03935 +0.7 4.3 hypothetical protein compare
HMPREF1058_RS17870 +0.7 3.1 metallophosphoesterase compare
HMPREF1058_RS03275 +0.7 2.3 hypothetical protein compare
HMPREF1058_RS17285 +0.7 3.7 glycosyltransferase compare
HMPREF1058_RS09860 +0.7 0.8 DUF3408 domain-containing protein compare
HMPREF1058_RS08765 +0.7 4.9 AMP-binding protein compare
HMPREF1058_RS05950 +0.7 2.6 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS13065 +0.7 4.1 hypothetical protein compare
HMPREF1058_RS18010 +0.7 3.4 L-asparaginase 2 compare
HMPREF1058_RS14315 +0.7 1.7 thioesterase family protein compare
HMPREF1058_RS21210 +0.7 1.6 hypothetical protein compare
HMPREF1058_RS03175 +0.7 3.4 DUF2764 domain-containing protein compare
HMPREF1058_RS07545 +0.7 1.1 hypothetical protein compare
HMPREF1058_RS10120 +0.7 1.1 hypothetical protein compare
HMPREF1058_RS17345 +0.7 3.2 CatB-related O-acetyltransferase compare
HMPREF1058_RS20440 +0.7 1.2 hypothetical protein compare
HMPREF1058_RS01640 +0.7 5.2 BamA/TamA family outer membrane protein compare
HMPREF1058_RS04555 +0.7 1.7 YqaJ viral recombinase family protein compare
HMPREF1058_RS09030 +0.7 2.8 pyridoxamine 5'-phosphate oxidase family protein compare
HMPREF1058_RS03940 +0.7 3.6 Nif3-like dinuclear metal center hexameric protein compare
HMPREF1058_RS07445 +0.7 2.0 uracil-DNA glycosylase compare
HMPREF1058_RS20490 +0.6 2.0 RNA polymerase subunit sigma-70 compare
HMPREF1058_RS11015 +0.6 4.5 hypothetical protein compare
HMPREF1058_RS10805 +0.6 2.8 FecR family protein compare
HMPREF1058_RS15540 +0.6 1.2 YccF domain-containing protein compare
HMPREF1058_RS05035 +0.6 4.4 C69 family dipeptidase compare
HMPREF1058_RS04340 +0.6 1.8 hypothetical protein compare
HMPREF1058_RS04235 +0.6 2.5 NUDIX hydrolase compare
HMPREF1058_RS04130 +0.6 1.2 winged helix-turn-helix domain-containing protein compare
HMPREF1058_RS02490 +0.6 1.1 four helix bundle protein compare
HMPREF1058_RS01235 +0.6 3.1 phosphoserine phosphatase SerB compare
HMPREF1058_RS17105 +0.6 3.4 hypothetical protein compare
HMPREF1058_RS05945 +0.6 3.8 DUF4836 family protein compare
HMPREF1058_RS00465 +0.6 1.9 translation initiation factor compare
HMPREF1058_RS03190 +0.6 2.5 V-type ATP synthase subunit D compare
HMPREF1058_RS05185 +0.6 2.6 hypothetical protein compare
HMPREF1058_RS06420 +0.6 1.0 type II toxin-antitoxin system HicA family toxin compare
HMPREF1058_RS13425 +0.6 2.8 HU family DNA-binding protein compare
HMPREF1058_RS06725 +0.6 3.9 glycosyl transferase compare
HMPREF1058_RS13045 +0.6 1.8 hypothetical protein compare
HMPREF1058_RS0120135 +0.6 1.8 hypothetical protein compare
HMPREF1058_RS0120025 +0.6 2.5 DUF975 family protein compare
HMPREF1058_RS11275 +0.6 0.9 hypothetical protein compare
HMPREF1058_RS04445 +0.6 0.9 porin family protein compare
HMPREF1058_RS07155 +0.6 1.8 DUF4891 domain-containing protein compare
HMPREF1058_RS21475 +0.6 0.6 smalltalk protein compare
HMPREF1058_RS09825 +0.6 2.1 RteC domain-containing protein compare
HMPREF1058_RS15550 +0.6 1.1 thioredoxin family protein compare
HMPREF1058_RS04515 +0.6 0.9 hypothetical protein compare
HMPREF1058_RS16675 +0.6 2.4 DUF1282 family protein compare
HMPREF1058_RS16405 +0.6 2.4 PepSY-like domain-containing protein compare
HMPREF1058_RS01615 +0.6 0.6 tRNA-Lys compare
HMPREF1058_RS03485 +0.6 2.3 RloB domain-containing protein compare
HMPREF1058_RS15525 +0.6 2.1 hypothetical protein compare
HMPREF1058_RS06375 +0.6 1.3 glutaminase A compare
HMPREF1058_RS01435 +0.5 3.3 anaerobic ribonucleoside-triphosphate reductase compare
HMPREF1058_RS10855 +0.5 3.4 glycosyltransferase family 2 protein compare
HMPREF1058_RS01330 +0.5 2.6 hypothetical protein compare
HMPREF1058_RS05355 +0.5 2.2 helix-turn-helix domain-containing protein compare
HMPREF1058_RS05955 +0.5 2.7 hypothetical protein compare
HMPREF1058_RS09240 +0.5 3.4 type I methionyl aminopeptidase compare
HMPREF1058_RS13020 +0.5 2.5 hypothetical protein compare
HMPREF1058_RS21545 +0.5 1.3 hypothetical protein compare
HMPREF1058_RS10125 +0.5 2.7 AAA family ATPase compare
HMPREF1058_RS05455 +0.5 3.0 alpha/beta fold hydrolase compare
HMPREF1058_RS21140 +0.5 0.9 ISAs1 family transposase compare
HMPREF1058_RS03250 +0.5 2.3 hypothetical protein compare
HMPREF1058_RS11430 +0.5 2.8 flavin reductase compare
HMPREF1058_RS21620 +0.5 1.1 hypothetical protein compare
HMPREF1058_RS02085 +0.5 3.0 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS16280 +0.5 1.2 MarR family transcriptional regulator compare
HMPREF1058_RS03930 +0.5 2.3 ABC transporter permease compare
HMPREF1058_RS17910 +0.5 1.6 PadR family transcriptional regulator compare
HMPREF1058_RS03075 +0.5 2.5 DNA helicase RecQ compare
HMPREF1058_RS14725 +0.5 2.8 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS13855 +0.5 2.2 histidine phosphatase family protein compare
HMPREF1058_RS04115 +0.5 1.1 CinA family protein compare
HMPREF1058_RS18980 +0.5 2.3 SGNH/GDSL hydrolase family protein compare
HMPREF1058_RS12570 +0.5 1.6 HIT family protein compare
HMPREF1058_RS06070 +0.5 1.4 ferritin compare
HMPREF1058_RS10330 +0.5 1.9 hypothetical protein compare
HMPREF1058_RS18150 +0.5 2.3 Fic family protein compare
HMPREF1058_RS09940 +0.5 0.8 lysozyme compare
HMPREF1058_RS21715 +0.5 2.4 hypothetical protein compare
HMPREF1058_RS12600 +0.5 1.4 hypothetical protein compare
HMPREF1058_RS17275 +0.5 1.8 GDP-L-fucose synthase compare
HMPREF1058_RS18320 +0.5 2.0 DUF3826 domain-containing protein compare
HMPREF1058_RS12640 +0.5 2.7 hypothetical protein compare
HMPREF1058_RS16035 +0.5 1.3 hypothetical protein compare
HMPREF1058_RS01830 +0.5 2.0 DUF882 domain-containing protein compare
HMPREF1058_RS01360 +0.5 2.3 DUF3871 family protein compare
HMPREF1058_RS14730 +0.5 2.4 threonine synthase compare
HMPREF1058_RS12305 +0.5 2.9 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS00390 +0.5 1.5 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS17335 +0.5 3.4 hydroxymethylglutaryl-CoA lyase compare
HMPREF1058_RS01205 +0.5 0.9 methyltransferase compare
HMPREF1058_RS17880 +0.5 1.2 diacylglycerol kinase family protein compare
HMPREF1058_RS03690 +0.5 2.2 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS01475 +0.5 1.2 hypothetical protein compare
HMPREF1058_RS01720 +0.5 2.0 lysine exporter LysO family protein compare
HMPREF1058_RS10645 +0.5 2.1 ATP-binding protein compare
HMPREF1058_RS10665 +0.5 1.3 hypothetical protein compare
HMPREF1058_RS10305 +0.5 1.5 hypothetical protein compare
HMPREF1058_RS02145 +0.5 1.3 hypothetical protein compare
HMPREF1058_RS02340 +0.4 2.7 RNA degradosome polyphosphate kinase compare
HMPREF1058_RS10765 +0.4 2.1 ribonuclease III compare
HMPREF1058_RS09715 +0.4 1.7 hypothetical protein compare
HMPREF1058_RS13735 +0.4 1.8 hypothetical protein compare
HMPREF1058_RS10190 +0.4 1.4 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS11585 +0.4 3.3 hypothetical protein compare
HMPREF1058_RS07585 +0.4 2.0 NADPH-dependent oxidoreductase compare
HMPREF1058_RS02655 +0.4 2.4 type I-C CRISPR-associated protein Cas7/Csd2 compare
HMPREF1058_RS19145 +0.4 1.5 phage antirepressor KilAC domain-containing protein compare
HMPREF1058_RS01980 +0.4 2.4 hypothetical protein compare
HMPREF1058_RS12035 +0.4 1.2 phosphate butyryltransferase compare
HMPREF1058_RS01250 +0.4 2.3 DUF4738 domain-containing protein compare
HMPREF1058_RS04260 +0.4 1.9 DNA recombination protein RmuC compare
HMPREF1058_RS17005 +0.4 1.5 DUF4251 domain-containing protein compare
HMPREF1058_RS17865 +0.4 1.7 hypothetical protein compare
HMPREF1058_RS05490 +0.4 1.4 helix-turn-helix domain-containing protein compare
HMPREF1058_RS17605 +0.4 1.9 DedA family protein compare
HMPREF1058_RS02005 +0.4 1.3 hypothetical protein compare
HMPREF1058_RS12310 +0.4 3.3 TonB-dependent receptor compare
HMPREF1058_RS15230 +0.4 1.2 DUF4348 domain-containing protein compare
HMPREF1058_RS01425 +0.4 2.4 sirohydrochlorin cobaltochelatase compare
HMPREF1058_RS02365 +0.4 3.2 DUF4981 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in mouse experiments

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono across organisms