Experiment set3S335 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day6

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS12490 -6.9 -3.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS09675 -6.3 -4.4 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS11040 -6.0 -4.2 polysaccharide deacetylase family protein compare
HMPREF1058_RS13655 -5.6 -3.9 cardiolipin synthase compare
HMPREF1058_RS02405 -5.4 -10.5 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS14610 -5.3 -3.7 adenylosuccinate synthase compare
HMPREF1058_RS10710 -5.2 -11.2 DUF3108 domain-containing protein compare
HMPREF1058_RS15075 -5.2 -3.6 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS06870 -5.0 -9.0 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS02410 -5.0 -9.0 methylmalonyl-CoA mutase compare
HMPREF1058_RS06875 -4.9 -3.4 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HMPREF1058_RS08840 -4.9 -8.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS10840 -4.8 -2.9 hypothetical protein compare
HMPREF1058_RS07955 -4.7 -3.2 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS18635 -4.7 -1.5 PepSY-like domain-containing protein compare
HMPREF1058_RS08025 -4.6 -3.2 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS10995 -4.5 -3.1 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS09180 -4.5 -4.3 hypothetical protein compare
HMPREF1058_RS14120 -4.5 -7.4 DUF349 domain-containing protein compare
HMPREF1058_RS00635 -4.5 -9.5 substrate-binding domain-containing protein compare
HMPREF1058_RS14770 -4.4 -4.3 prephenate dehydrogenase compare
HMPREF1058_RS06380 -4.3 -4.2 copper homeostasis protein CutC compare
HMPREF1058_RS12115 -4.3 -10.1 acetylglutamate kinase compare
HMPREF1058_RS14785 -4.3 -3.0 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS00630 -4.3 -7.7 carbohydrate kinase compare
HMPREF1058_RS16625 -4.3 -3.0 hypothetical protein compare
HMPREF1058_RS01450 -4.3 -2.9 acetyl-CoA carboxylase biotin carboxylase subunit compare
HMPREF1058_RS02975 -4.2 -1.7 hypothetical protein compare
HMPREF1058_RS00615 -4.2 -12.6 TonB-dependent receptor compare
HMPREF1058_RS07745 -4.2 -11.8 N-acetylglucosamine-6-phosphate deacetylase compare
HMPREF1058_RS09185 -4.2 -2.9 DUF4252 domain-containing protein compare
HMPREF1058_RS16760 -4.1 -2.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS09745 -4.1 -7.8 glycosyltransferase compare
HMPREF1058_RS06195 -4.0 -2.8 diaminopimelate decarboxylase compare
HMPREF1058_RS00205 -4.0 -9.6 cation:proton antiporter compare
HMPREF1058_RS01460 -4.0 -2.4 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS16620 -3.9 -3.8 GGGtGRT protein compare
HMPREF1058_RS12105 -3.9 -3.8 shikimate kinase compare
HMPREF1058_RS06320 -3.9 -5.3 electron transport complex subunit RsxA compare
HMPREF1058_RS00620 -3.9 -15.8 GH32 C-terminal domain-containing protein compare
HMPREF1058_RS10490 -3.9 -9.9 rhomboid family intramembrane serine protease compare
HMPREF1058_RS03000 -3.8 -3.7 IMP dehydrogenase compare
HMPREF1058_RS08855 -3.8 -11.7 arginine repressor compare
HMPREF1058_RS09590 -3.8 -7.3 hypothetical protein compare
HMPREF1058_RS14740 -3.8 -6.3 iron ABC transporter permease compare
HMPREF1058_RS15435 -3.8 -5.2 hypothetical protein compare
HMPREF1058_RS14565 -3.8 -12.4 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS12780 -3.8 -10.3 M20 family metallo-hydrolase compare
HMPREF1058_RS16500 -3.7 -2.6 OadG family protein compare
HMPREF1058_RS04375 -3.6 -2.5 carbon-nitrogen hydrolase compare
HMPREF1058_RS14790 -3.5 -11.5 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS17045 -3.5 -2.4 hypothetical protein compare
HMPREF1058_RS11730 -3.5 -1.9 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS14200 -3.5 -13.8 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS09750 -3.4 -4.1 glycosyltransferase compare
HMPREF1058_RS16505 -3.4 -2.4 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS06345 -3.4 -3.3 Fe-S cluster domain-containing protein compare
HMPREF1058_RS00625 -3.4 -10.1 MFS transporter compare
HMPREF1058_RS06350 -3.4 -4.6 SoxR reducing system RseC family protein compare
HMPREF1058_RS17935 -3.3 -5.6 glycosyltransferase compare
HMPREF1058_RS06560 -3.3 -2.3 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS17050 -3.3 -2.3 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS07655 -3.3 -1.4 hypothetical protein compare
HMPREF1058_RS21520 -3.3 -1.0 hypothetical protein compare
HMPREF1058_RS10720 -3.3 -3.9 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS13350 -3.3 -5.9 Trk system potassium transporter TrkA compare
HMPREF1058_RS14745 -3.2 -8.1 ABC transporter substrate-binding protein compare
HMPREF1058_RS07750 -3.2 -14.0 efflux RND transporter permease subunit compare
HMPREF1058_RS03805 -3.2 -4.9 PorT family protein compare
HMPREF1058_RS10295 -3.2 -1.7 hypothetical protein compare
HMPREF1058_RS00595 -3.2 -2.2 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS14835 -3.1 -3.1 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS16495 -3.1 -2.1 biotin/lipoyl-binding protein compare
HMPREF1058_RS06085 -3.1 -11.9 hypothetical protein compare
HMPREF1058_RS08995 -3.0 -15.9 GH92 family glycosyl hydrolase compare
HMPREF1058_RS04035 -3.0 -2.1 hypothetical protein compare
HMPREF1058_RS02125 -3.0 -7.9 PorT family protein compare
HMPREF1058_RS14215 -3.0 -2.1 (d)CMP kinase compare
HMPREF1058_RS02880 -3.0 -11.4 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS07755 -3.0 -10.0 TolC family protein compare
HMPREF1058_RS14660 -3.0 -6.3 TolC family protein compare
HMPREF1058_RS01665 -3.0 -2.0 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS06335 -3.0 -4.1 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS18235 -3.0 -2.9 3'-5' exonuclease compare
HMPREF1058_RS09890 -2.9 -0.9 DUF3876 domain-containing protein compare
HMPREF1058_RS10270 -2.9 -3.3 hypothetical protein compare
HMPREF1058_RS14550 -2.9 -10.9 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS17060 -2.9 -4.0 HAD family hydrolase compare
HMPREF1058_RS10835 -2.9 -5.2 UDP-galactopyranose mutase compare
HMPREF1058_RS16510 -2.8 -3.4 methylmalonyl-CoA epimerase compare
HMPREF1058_RS02130 -2.8 -12.5 hypothetical protein compare
HMPREF1058_RS15660 -2.8 -11.1 galactokinase compare
HMPREF1058_RS03910 -2.8 -3.4 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS01650 -2.8 -4.2 hypothetical protein compare
HMPREF1058_RS06325 -2.8 -1.9 electron transport complex subunit E compare
HMPREF1058_RS11535 -2.8 -6.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS07675 -2.7 -7.3 elongation factor G compare
HMPREF1058_RS16690 -2.7 -8.3 NTP transferase domain-containing protein compare
HMPREF1058_RS11310 -2.7 -3.7 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS07890 -2.7 -7.5 hypothetical protein compare
HMPREF1058_RS14735 -2.7 -5.8 ABC transporter ATP-binding protein compare
HMPREF1058_RS10965 -2.7 -7.4 cation transporter compare
HMPREF1058_RS06340 -2.7 -3.2 electron transport complex subunit RsxC compare
HMPREF1058_RS05145 -2.7 -4.8 ATP-binding protein compare
HMPREF1058_RS11490 -2.7 -1.8 redox-regulated ATPase YchF compare
HMPREF1058_RS06060 -2.7 -6.8 YegS/Rv2252/BmrU family lipid kinase compare
HMPREF1058_RS08295 -2.7 -2.6 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS01655 -2.7 -4.4 DUF4296 domain-containing protein compare
HMPREF1058_RS06600 -2.6 -2.6 DedA family protein compare
HMPREF1058_RS16855 -2.6 -0.8 LPS export ABC transporter periplasmic protein LptC compare
HMPREF1058_RS04005 -2.6 -8.4 patatin-like phospholipase family protein compare
HMPREF1058_RS17040 -2.6 -3.1 NTP transferase domain-containing protein compare
HMPREF1058_RS06310 -2.6 -1.8 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS12345 -2.6 -11.9 4-alpha-glucanotransferase compare
HMPREF1058_RS07765 -2.6 -5.8 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS04070 -2.6 -1.8 hypothetical protein compare
HMPREF1058_RS09460 -2.6 -11.3 gamma carbonic anhydrase family protein compare
HMPREF1058_RS07725 -2.6 -6.2 NigD-like N-terminal domain-containing protein compare
HMPREF1058_RS14755 -2.6 -12.8 hypothetical protein compare
HMPREF1058_RS14795 -2.6 -6.1 prephenate dehydratase compare
HMPREF1058_RS13910 -2.6 -4.4 nucleoside deaminase compare
HMPREF1058_RS14655 -2.5 -12.0 CusA/CzcA family heavy metal efflux RND transporter compare
HMPREF1058_RS09585 -2.5 -4.4 argininosuccinate lyase compare
HMPREF1058_RS15380 -2.5 -9.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS07760 -2.5 -12.1 efflux RND transporter permease subunit compare
HMPREF1058_RS07285 -2.5 -11.2 ROK family transcriptional regulator compare
HMPREF1058_RS06040 -2.5 -4.4 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS01905 -2.5 -3.1 hypothetical protein compare
HMPREF1058_RS10910 -2.5 -13.4 glycosyltransferase family 39 protein compare
HMPREF1058_RS17805 -2.5 -5.4 HAD family hydrolase compare
HMPREF1058_RS16730 -2.5 -1.7 chorismate synthase compare
HMPREF1058_RS04075 -2.4 -1.7 DUF58 domain-containing protein compare
HMPREF1058_RS02220 -2.4 -3.7 branched-chain amino acid aminotransferase compare
HMPREF1058_RS17235 -2.4 -8.0 glycoside hydrolase family 88 protein compare
HMPREF1058_RS12070 -2.4 -1.7 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS06640 -2.4 -7.3 chain-length determining protein compare
HMPREF1058_RS08845 -2.4 -8.4 argininosuccinate synthase compare
HMPREF1058_RS04080 -2.4 -1.6 AAA family ATPase compare
HMPREF1058_RS06190 -2.4 -2.3 aspartate kinase compare
HMPREF1058_RS10850 -2.3 -10.1 glycosyltransferase family 2 protein compare
HMPREF1058_RS0119720 -2.3 -2.2 hypothetical protein compare
HMPREF1058_RS14005 -2.3 -1.6 3-dehydroquinate synthase compare
HMPREF1058_RS04065 -2.3 -1.2 VWA domain-containing protein compare
HMPREF1058_RS12315 -2.3 -10.7 glycoside hydrolase family 97 protein compare
HMPREF1058_RS14650 -2.3 -7.9 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS03510 -2.3 -1.6 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS13970 -2.3 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS14590 -2.3 -1.6 AraC family transcriptional regulator compare
HMPREF1058_RS17130 -2.3 -2.0 tetratricopeptide repeat protein compare
HMPREF1058_RS17070 -2.3 -11.3 ribokinase compare
HMPREF1058_RS15665 -2.3 -2.2 MFS transporter compare
HMPREF1058_RS08615 -2.3 -7.5 RluA family pseudouridine synthase compare
HMPREF1058_RS18050 -2.3 -1.8 DUF4492 domain-containing protein compare
HMPREF1058_RS08535 -2.3 -1.5 elongation factor P compare
HMPREF1058_RS14760 -2.2 -14.1 TonB-dependent receptor compare
HMPREF1058_RS02095 -2.2 -6.3 efflux transporter outer membrane subunit compare
HMPREF1058_RS07960 -2.2 -14.2 response regulator compare
HMPREF1058_RS17170 -2.2 -7.4 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS02100 -2.2 -12.0 efflux RND transporter permease subunit compare
HMPREF1058_RS14285 -2.2 -1.9 DUF5056 domain-containing protein compare
HMPREF1058_RS17885 -2.2 -12.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS07635 -2.2 -2.0 50S ribosomal protein L9 compare
HMPREF1058_RS15390 -2.2 -4.2 5-methyltetrahydrofolate--homocysteine methyltransferase compare
HMPREF1058_RS07040 -2.2 -7.1 tetratricopeptide repeat protein compare
HMPREF1058_RS17940 -2.2 -4.8 alpha-amylase compare
HMPREF1058_RS08315 -2.1 -6.1 biopolymer transporter ExbD compare
HMPREF1058_RS11915 -2.1 -0.9 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS07670 -2.1 -1.3 HAMP domain-containing histidine kinase compare
HMPREF1058_RS15635 -2.1 -12.5 L-arabinose isomerase compare
HMPREF1058_RS06880 -2.1 -9.7 amidophosphoribosyltransferase compare
HMPREF1058_RS06645 -2.1 -8.3 SLBB domain-containing protein compare
HMPREF1058_RS02120 -2.1 -8.7 PCMD domain-containing protein compare
HMPREF1058_RS18265 -2.1 -1.4 aspartate 1-decarboxylase compare
HMPREF1058_RS04370 -2.1 -2.5 agmatine deiminase family protein compare
HMPREF1058_RS10275 -2.1 -8.0 RNA-splicing ligase RtcB compare
HMPREF1058_RS06525 -2.1 -11.0 hypothetical protein compare
HMPREF1058_RS15640 -2.1 -6.1 L-ribulose-5-phosphate 4-epimerase compare
HMPREF1058_RS14075 -2.1 -2.7 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS07440 -2.0 -4.7 aspartate--ammonia ligase compare
HMPREF1058_RS09620 -2.0 -4.5 hypothetical protein compare
HMPREF1058_RS01745 -2.0 -2.8 PorT family protein compare
HMPREF1058_RS06330 -2.0 -3.6 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS14035 -2.0 -1.3 hypothetical protein compare
HMPREF1058_RS10900 -2.0 -7.8 glycosyltransferase compare
HMPREF1058_RS14225 -2.0 -4.0 polyprenyl synthetase family protein compare
HMPREF1058_RS01270 -2.0 -4.6 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1058_RS11930 -2.0 -3.9 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS14125 -2.0 -11.6 magnesium transporter compare
HMPREF1058_RS16685 -2.0 -11.3 methionine synthase compare
HMPREF1058_RS09445 -2.0 -1.0 tyrosine-type recombinase/integrase compare
HMPREF1058_RS08640 -2.0 -1.9 acetylornithine carbamoyltransferase compare
HMPREF1058_RS06505 -2.0 -4.8 LicD family protein compare
HMPREF1058_RS09610 -2.0 -5.9 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS09000 -1.9 -5.6 FecR domain-containing protein compare
HMPREF1058_RS04040 -1.9 -5.0 phosphatase PAP2 family protein compare
HMPREF1058_RS17155 -1.9 -1.3 dCMP deaminase family protein compare
HMPREF1058_RS15920 -1.9 -1.6 hypothetical protein compare
HMPREF1058_RS15630 -1.9 -9.9 FGGY-family carbohydrate kinase compare
HMPREF1058_RS03800 -1.9 -6.4 serine hydroxymethyltransferase compare
HMPREF1058_RS18680 -1.9 -3.7 F0F1 ATP synthase subunit B compare


Specific Phenotypes

For 1 genes in this experiment

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono in Phocaeicola vulgatus CL09T03C04

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono across organisms