Experiment set3S335 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day6

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS15565 +7.0 32.6 hypothetical protein compare
HMPREF1058_RS10230 +3.8 2.8 hypothetical protein compare
HMPREF1058_RS15090 +3.7 9.2 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS15100 +3.4 6.4 hypothetical protein compare
HMPREF1058_RS11270 +3.2 19.6 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS15080 +3.1 7.1 glycoside hydrolase family 97 protein compare
HMPREF1058_RS02250 +3.1 23.3 hypothetical protein compare
HMPREF1058_RS02255 +2.8 10.5 DUF3244 domain-containing protein compare
HMPREF1058_RS03950 +2.7 2.9 type I restriction enzyme HsdR N-terminal domain-containing protein compare
HMPREF1058_RS01500 +2.7 1.9 hypothetical protein compare
HMPREF1058_RS02260 +2.6 11.1 hypothetical protein compare
HMPREF1058_RS16250 +2.5 10.5 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS0119645 +2.4 4.7 AAA family ATPase compare
HMPREF1058_RS04545 +2.4 7.8 hypothetical protein compare
HMPREF1058_RS02245 +2.3 4.3 cytidylate kinase-like family protein compare
HMPREF1058_RS02800 +2.3 9.9 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS14020 +2.1 13.4 cardiolipin synthase compare
HMPREF1058_RS07720 +2.1 9.3 sigma-70 family RNA polymerase sigma factor compare
HMPREF1058_RS11825 +2.1 6.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS15095 +2.0 5.6 hypothetical protein compare
HMPREF1058_RS07310 +2.0 9.9 glucosamine-6-phosphate deaminase compare
HMPREF1058_RS15085 +2.0 7.0 TonB-dependent receptor compare
HMPREF1058_RS19120 +1.9 2.3 hypothetical protein compare
HMPREF1058_RS16260 +1.9 4.1 hotdog fold thioesterase compare
HMPREF1058_RS03295 +1.9 2.0 sulfur carrier protein ThiS compare
HMPREF1058_RS11165 +1.8 6.4 glycoside hydrolase family 127 protein compare
HMPREF1058_RS10955 +1.8 8.7 phosphatase PAP2 family protein compare
HMPREF1058_RS16830 +1.8 7.3 acyl-ACP thioesterase compare
HMPREF1058_RS11880 +1.7 12.2 hypothetical protein compare
HMPREF1058_RS02755 +1.7 1.1 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS03200 +1.7 7.4 V-type ATP synthase subunit K compare
HMPREF1058_RS16255 +1.6 4.8 isochorismate synthase compare
HMPREF1058_RS04430 +1.5 7.1 alpha-1,2-fucosyltransferase compare
HMPREF1058_RS02320 +1.5 2.3 hypothetical protein compare
HMPREF1058_RS01530 +1.5 2.6 NAD(P)H-dependent oxidoreductase compare
HMPREF1058_RS01625 +1.5 2.2 hypothetical protein compare
HMPREF1058_RS03170 +1.5 4.0 hypothetical protein compare
HMPREF1058_RS16515 +1.4 6.6 GNAT family N-acetyltransferase compare
HMPREF1058_RS15570 +1.4 11.1 hypothetical protein compare
HMPREF1058_RS17650 +1.4 4.2 response regulator transcription factor compare
HMPREF1058_RS19205 +1.4 1.5 hypothetical protein compare
HMPREF1058_RS11435 +1.4 3.8 DNA mismatch repair protein MutS compare
HMPREF1058_RS03190 +1.4 6.7 V-type ATP synthase subunit D compare
HMPREF1058_RS21725 +1.3 3.5 hypothetical protein compare
HMPREF1058_RS02335 +1.3 1.5 hypothetical protein compare
HMPREF1058_RS18940 +1.3 1.2 hypothetical protein compare
HMPREF1058_RS01445 +1.3 1.9 cysteine-rich CWC family protein compare
HMPREF1058_RS06375 +1.3 2.4 glutaminase A compare
HMPREF1058_RS11275 +1.3 1.9 hypothetical protein compare
HMPREF1058_RS21140 +1.3 1.7 ISAs1 family transposase compare
HMPREF1058_RS03180 +1.3 8.0 V-type ATP synthase subunit A compare
HMPREF1058_RS07735 +1.2 3.6 chloride channel protein compare
HMPREF1058_RS21310 +1.2 2.0 hypothetical protein compare
HMPREF1058_RS13060 +1.2 3.0 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS16015 +1.2 1.3 helix-turn-helix domain-containing protein compare
HMPREF1058_RS05200 +1.2 6.2 MaoC family dehydratase compare
HMPREF1058_RS04950 +1.2 1.5 hypothetical protein compare
HMPREF1058_RS03185 +1.2 7.8 V-type ATP synthase subunit B compare
HMPREF1058_RS06420 +1.2 1.7 type II toxin-antitoxin system HicA family toxin compare
HMPREF1058_RS05695 +1.1 2.0 helix-turn-helix domain-containing protein compare
HMPREF1058_RS10885 +1.1 5.7 glycosyltransferase compare
HMPREF1058_RS10860 +1.1 4.7 glycosyltransferase family 8 protein compare
HMPREF1058_RS17645 +1.1 6.9 DUF5113 domain-containing protein compare
HMPREF1058_RS18010 +1.1 3.7 L-asparaginase 2 compare
HMPREF1058_RS10890 +1.1 5.6 glycosyltransferase family 2 protein compare
HMPREF1058_RS10455 +1.1 5.1 glycine C-acetyltransferase compare
HMPREF1058_RS10330 +1.1 3.3 hypothetical protein compare
HMPREF1058_RS10815 +1.1 4.8 DUF4249 domain-containing protein compare
HMPREF1058_RS08765 +1.1 7.2 AMP-binding protein compare
HMPREF1058_RS18890 +1.0 2.4 DUF3127 domain-containing protein compare
HMPREF1058_RS04995 +1.0 4.5 putative sulfate exporter family transporter compare
HMPREF1058_RS11830 +1.0 8.0 hypothetical protein compare
HMPREF1058_RS02490 +1.0 2.6 four helix bundle protein compare
HMPREF1058_RS04235 +1.0 3.6 NUDIX hydrolase compare
HMPREF1058_RS01235 +1.0 5.0 phosphoserine phosphatase SerB compare
HMPREF1058_RS10705 +1.0 5.9 hypothetical protein compare
HMPREF1058_RS21210 +1.0 1.8 hypothetical protein compare
HMPREF1058_RS15430 +1.0 6.8 aspartate-alanine antiporter compare
HMPREF1058_RS04115 +1.0 1.9 CinA family protein compare
HMPREF1058_RS18505 +1.0 1.0 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS10160 +1.0 1.5 hypothetical protein compare
HMPREF1058_RS05185 +1.0 3.5 hypothetical protein compare
HMPREF1058_RS17370 +0.9 1.9 UpxY family transcription antiterminator compare
HMPREF1058_RS07370 +0.9 5.3 N-acetylglucosamine-6-phosphate deacetylase compare
HMPREF1058_RS07545 +0.9 1.2 hypothetical protein compare
HMPREF1058_RS05615 +0.9 0.9 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS11840 +0.9 6.6 hypothetical protein compare
HMPREF1058_RS11155 +0.9 3.2 PD-(D/E)XK nuclease domain-containing protein compare
HMPREF1058_RS12600 +0.9 2.2 hypothetical protein compare
HMPREF1058_RS06265 +0.9 4.1 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS09940 +0.9 1.3 lysozyme compare
HMPREF1058_RS0119615 +0.9 1.3 hypothetical protein compare
HMPREF1058_RS09905 +0.9 1.7 conjugative transposon protein TraK compare
HMPREF1058_RS07445 +0.9 2.5 uracil-DNA glycosylase compare
HMPREF1058_RS14560 +0.9 3.1 2-isopropylmalate synthase compare
HMPREF1058_RS10665 +0.9 2.3 hypothetical protein compare
HMPREF1058_RS0119640 +0.9 3.2 hypothetical protein compare
HMPREF1058_RS01205 +0.9 1.2 methyltransferase compare
HMPREF1058_RS10805 +0.9 3.2 FecR family protein compare
HMPREF1058_RS13065 +0.9 4.7 hypothetical protein compare
HMPREF1058_RS03940 +0.8 3.2 Nif3-like dinuclear metal center hexameric protein compare
HMPREF1058_RS19025 +0.8 1.1 hypothetical protein compare
HMPREF1058_RS04340 +0.8 2.0 hypothetical protein compare
HMPREF1058_RS17345 +0.8 3.1 CatB-related O-acetyltransferase compare
HMPREF1058_RS03195 +0.8 3.9 V-type ATP synthase subunit I compare
HMPREF1058_RS0119260 +0.8 0.9 hypothetical protein compare
HMPREF1058_RS17610 +0.8 2.3 DUF47 domain-containing protein compare
HMPREF1058_RS17870 +0.8 3.6 metallophosphoesterase compare
HMPREF1058_RS09525 +0.8 4.0 xylanase compare
HMPREF1058_RS10875 +0.8 4.4 glycosyltransferase compare
HMPREF1058_RS04740 +0.8 3.2 DUF5606 domain-containing protein compare
HMPREF1058_RS0119985 +0.8 2.7 NAD(P)H-dependent oxidoreductase subunit E compare
HMPREF1058_RS10240 +0.8 2.7 phage portal protein compare
HMPREF1058_RS10305 +0.8 2.7 hypothetical protein compare
HMPREF1058_RS17865 +0.8 2.6 hypothetical protein compare
HMPREF1058_RS06255 +0.8 3.1 hypothetical protein compare
HMPREF1058_RS01330 +0.8 2.9 hypothetical protein compare
HMPREF1058_RS02750 +0.7 0.7 BamA/TamA family outer membrane protein compare
HMPREF1058_RS05035 +0.7 4.5 C69 family dipeptidase compare
HMPREF1058_RS0120025 +0.7 2.8 DUF975 family protein compare
HMPREF1058_RS20715 +0.7 3.6 hypothetical protein compare
HMPREF1058_RS01345 +0.7 2.3 recombinase family protein compare
HMPREF1058_RS07155 +0.7 2.1 DUF4891 domain-containing protein compare
HMPREF1058_RS03460 +0.7 2.1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
HMPREF1058_RS18895 +0.7 1.1 hypothetical protein compare
HMPREF1058_RS02085 +0.7 3.5 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS11015 +0.7 4.7 hypothetical protein compare
HMPREF1058_RS03580 +0.7 1.5 UpxY family transcription antiterminator compare
HMPREF1058_RS16520 +0.7 1.8 nitroreductase family protein compare
HMPREF1058_RS10220 +0.7 2.1 hypothetical protein compare
HMPREF1058_RS06260 +0.7 3.0 DUF3943 domain-containing protein compare
HMPREF1058_RS02145 +0.7 2.2 hypothetical protein compare
HMPREF1058_RS10235 +0.7 2.6 phage portal protein compare
HMPREF1058_RS01640 +0.7 5.1 BamA/TamA family outer membrane protein compare
HMPREF1058_RS16035 +0.7 2.1 hypothetical protein compare
HMPREF1058_RS17275 +0.7 2.5 GDP-L-fucose synthase compare
HMPREF1058_RS04700 +0.7 2.2 RNA-binding S4 domain-containing protein compare
HMPREF1058_RS05800 +0.7 1.2 DUF4858 domain-containing protein compare
HMPREF1058_RS05955 +0.7 2.7 hypothetical protein compare
HMPREF1058_RS03930 +0.7 2.4 ABC transporter permease compare
HMPREF1058_RS20490 +0.7 1.0 RNA polymerase subunit sigma-70 compare
HMPREF1058_RS17205 +0.7 1.6 DUF4199 domain-containing protein compare
HMPREF1058_RS01715 +0.7 2.0 LysO family transporter compare
HMPREF1058_RS02765 +0.7 2.0 insulinase family protein compare
HMPREF1058_RS13785 +0.7 3.5 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS18770 +0.7 0.5 hypothetical protein compare
HMPREF1058_RS04445 +0.7 0.9 porin family protein compare
HMPREF1058_RS12305 +0.7 3.7 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS05965 +0.7 2.0 hypothetical protein compare
HMPREF1058_RS03250 +0.6 3.1 hypothetical protein compare
HMPREF1058_RS17365 +0.6 1.1 nucleotidyltransferase domain-containing protein compare
HMPREF1058_RS14485 +0.6 2.4 lipoyl synthase compare
HMPREF1058_RS04365 +0.6 5.0 translocation/assembly module TamB compare
HMPREF1058_RS12310 +0.6 4.6 TonB-dependent receptor compare
HMPREF1058_RS04490 +0.6 2.9 energy transducer TonB compare
HMPREF1058_RS04575 +0.6 0.8 hypothetical protein compare
HMPREF1058_RS10765 +0.6 2.9 ribonuclease III compare
HMPREF1058_RS15525 +0.6 2.1 hypothetical protein compare
HMPREF1058_RS11815 +0.6 4.2 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS09550 +0.6 2.0 PepSY domain-containing protein compare
HMPREF1058_RS19220 +0.6 2.2 tape measure protein compare
HMPREF1058_RS05190 +0.6 1.1 hypothetical protein compare
HMPREF1058_RS17285 +0.6 2.5 glycosyltransferase compare
HMPREF1058_RS04165 +0.6 3.0 O-acetyl-ADP-ribose deacetylase compare
HMPREF1058_RS01180 +0.6 1.6 ABC transporter ATP-binding protein compare
HMPREF1058_RS0119250 +0.6 1.2 hypothetical protein compare
HMPREF1058_RS18150 +0.6 2.6 Fic family protein compare
HMPREF1058_RS10650 +0.6 1.6 hypothetical protein compare
HMPREF1058_RS10125 +0.6 2.4 AAA family ATPase compare
HMPREF1058_RS00140 +0.6 2.0 L-rhamnose mutarotase compare
HMPREF1058_RS16600 +0.6 1.8 PepSY-associated TM helix domain-containing protein compare
HMPREF1058_RS00465 +0.6 1.9 translation initiation factor compare
HMPREF1058_RS03600 +0.6 2.9 oligosaccharide repeat unit polymerase compare
HMPREF1058_RS20315 +0.6 3.1 acyltransferase family protein compare
HMPREF1058_RS15995 +0.6 2.8 helix-turn-helix domain-containing protein compare
HMPREF1058_RS04270 +0.6 0.7 ferredoxin compare
HMPREF1058_RS21620 +0.6 0.9 hypothetical protein compare
HMPREF1058_RS16565 +0.6 1.5 TlpA family protein disulfide reductase compare
HMPREF1058_RS02615 +0.6 2.3 [FeFe] hydrogenase H-cluster radical SAM maturase HydE compare
HMPREF1058_RS09965 +0.6 1.1 DUF3873 domain-containing protein compare
HMPREF1058_RS12035 +0.6 1.2 phosphate butyryltransferase compare
HMPREF1058_RS18980 +0.6 2.4 SGNH/GDSL hydrolase family protein compare
HMPREF1058_RS13140 +0.6 2.3 sugar transferase compare
HMPREF1058_RS0119660 +0.6 4.0 DNA cytosine methyltransferase compare
HMPREF1058_RS06945 +0.6 0.6 tRNA-Thr compare
HMPREF1058_RS05945 +0.6 3.2 DUF4836 family protein compare
HMPREF1058_RS18935 +0.6 1.0 hypothetical protein compare
HMPREF1058_RS02365 +0.6 4.0 DUF4981 domain-containing protein compare
HMPREF1058_RS12990 +0.6 0.8 hypothetical protein compare
HMPREF1058_RS21675 +0.6 1.7 hypothetical protein compare
HMPREF1058_RS21515 +0.6 2.2 hypothetical protein compare
HMPREF1058_RS07100 +0.6 2.6 D-xylose transporter XylE compare
HMPREF1058_RS09160 +0.6 1.6 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase compare
HMPREF1058_RS02150 +0.6 2.8 DUF3440 domain-containing protein compare
HMPREF1058_RS21045 +0.6 1.4 hypothetical protein compare
HMPREF1058_RS21645 +0.6 1.6 hypothetical protein compare
HMPREF1058_RS05950 +0.6 1.7 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS16525 +0.6 0.8 hypothetical protein compare
HMPREF1058_RS11485 +0.6 2.0 ketopantoate reductase family protein compare
HMPREF1058_RS01365 +0.6 2.0 DEAD/DEAH box helicase family protein compare


Specific Phenotypes

For 1 genes in this experiment

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono in Phocaeicola vulgatus CL09T03C04

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono across organisms