Experiment set3S325 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day3

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS15565 +3.9 27.1 hypothetical protein compare
HMPREF1058_RS15090 +2.4 7.3 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS15100 +2.2 5.5 hypothetical protein compare
HMPREF1058_RS15080 +2.0 5.8 glycoside hydrolase family 97 protein compare
HMPREF1058_RS11825 +1.9 10.3 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS04545 +1.9 6.9 hypothetical protein compare
HMPREF1058_RS02250 +1.9 15.3 hypothetical protein compare
HMPREF1058_RS10230 +1.9 2.0 hypothetical protein compare
HMPREF1058_RS16250 +1.8 10.3 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS02255 +1.8 10.2 DUF3244 domain-containing protein compare
HMPREF1058_RS02260 +1.6 8.4 hypothetical protein compare
HMPREF1058_RS0119645 +1.6 4.5 AAA family ATPase compare
HMPREF1058_RS11270 +1.6 11.1 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS11165 +1.5 6.7 glycoside hydrolase family 127 protein compare
HMPREF1058_RS07720 +1.5 8.4 sigma-70 family RNA polymerase sigma factor compare
HMPREF1058_RS03295 +1.4 2.2 sulfur carrier protein ThiS compare
HMPREF1058_RS02800 +1.4 7.0 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS02245 +1.4 3.3 cytidylate kinase-like family protein compare
HMPREF1058_RS14020 +1.3 10.2 cardiolipin synthase compare
HMPREF1058_RS11880 +1.3 10.5 hypothetical protein compare
HMPREF1058_RS15085 +1.2 5.4 TonB-dependent receptor compare
HMPREF1058_RS05695 +1.1 2.4 helix-turn-helix domain-containing protein compare
HMPREF1058_RS15095 +1.0 3.9 hypothetical protein compare
HMPREF1058_RS19120 +1.0 1.4 hypothetical protein compare
HMPREF1058_RS02320 +1.0 2.4 hypothetical protein compare
HMPREF1058_RS03200 +1.0 4.3 V-type ATP synthase subunit K compare
HMPREF1058_RS15570 +1.0 8.1 hypothetical protein compare
HMPREF1058_RS02335 +1.0 1.8 hypothetical protein compare
HMPREF1058_RS04530 +0.9 1.2 hypothetical protein compare
HMPREF1058_RS07310 +0.9 5.3 glucosamine-6-phosphate deaminase compare
HMPREF1058_RS16255 +0.9 3.9 isochorismate synthase compare
HMPREF1058_RS17370 +0.9 3.5 UpxY family transcription antiterminator compare
HMPREF1058_RS21725 +0.9 2.4 hypothetical protein compare
HMPREF1058_RS16260 +0.9 1.5 hotdog fold thioesterase compare
HMPREF1058_RS10885 +0.8 4.9 glycosyltransferase compare
HMPREF1058_RS03180 +0.8 5.7 V-type ATP synthase subunit A compare
HMPREF1058_RS16830 +0.8 3.6 acyl-ACP thioesterase compare
HMPREF1058_RS07735 +0.8 3.2 chloride channel protein compare
HMPREF1058_RS16515 +0.8 4.0 GNAT family N-acetyltransferase compare
HMPREF1058_RS03190 +0.8 3.5 V-type ATP synthase subunit D compare
HMPREF1058_RS03170 +0.8 3.0 hypothetical protein compare
HMPREF1058_RS05185 +0.8 3.9 hypothetical protein compare
HMPREF1058_RS07445 +0.7 2.7 uracil-DNA glycosylase compare
HMPREF1058_RS03690 +0.7 3.7 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS21310 +0.7 1.6 hypothetical protein compare
HMPREF1058_RS21380 +0.7 1.7 hypothetical protein compare
HMPREF1058_RS20440 +0.7 2.1 hypothetical protein compare
HMPREF1058_RS21210 +0.7 1.6 hypothetical protein compare
HMPREF1058_RS17645 +0.7 5.3 DUF5113 domain-containing protein compare
HMPREF1058_RS21575 +0.7 1.4 mobilization protein compare
HMPREF1058_RS03185 +0.7 5.4 V-type ATP synthase subunit B compare
HMPREF1058_RS03485 +0.7 2.7 RloB domain-containing protein compare
HMPREF1058_RS04385 +0.7 3.1 methylated-DNA--[protein]-cysteine S-methyltransferase compare
HMPREF1058_RS04600 +0.7 1.5 hypothetical protein compare
HMPREF1058_RS11830 +0.7 5.7 hypothetical protein compare
HMPREF1058_RS09905 +0.7 1.7 conjugative transposon protein TraK compare
HMPREF1058_RS03940 +0.7 3.8 Nif3-like dinuclear metal center hexameric protein compare
HMPREF1058_RS10890 +0.7 4.2 glycosyltransferase family 2 protein compare
HMPREF1058_RS18890 +0.7 1.5 DUF3127 domain-containing protein compare
HMPREF1058_RS20490 +0.6 1.8 RNA polymerase subunit sigma-70 compare
HMPREF1058_RS04445 +0.6 1.0 porin family protein compare
HMPREF1058_RS01475 +0.6 1.5 hypothetical protein compare
HMPREF1058_RS06945 +0.6 0.9 tRNA-Thr compare
HMPREF1058_RS16675 +0.6 3.0 DUF1282 family protein compare
HMPREF1058_RS07370 +0.6 4.4 N-acetylglucosamine-6-phosphate deacetylase compare
HMPREF1058_RS21635 +0.6 1.4 transcriptional regulator compare
HMPREF1058_RS05415 +0.6 1.7 Hsp20/alpha crystallin family protein compare
HMPREF1058_RS03075 +0.6 3.5 DNA helicase RecQ compare
HMPREF1058_RS05200 +0.6 3.2 MaoC family dehydratase compare
HMPREF1058_RS01625 +0.6 1.1 hypothetical protein compare
HMPREF1058_RS08000 +0.6 2.2 hypothetical protein compare
HMPREF1058_RS17650 +0.6 2.0 response regulator transcription factor compare
HMPREF1058_RS10455 +0.6 3.6 glycine C-acetyltransferase compare
HMPREF1058_RS04235 +0.6 2.2 NUDIX hydrolase compare
HMPREF1058_RS11840 +0.6 4.9 hypothetical protein compare
HMPREF1058_RS17345 +0.6 2.8 CatB-related O-acetyltransferase compare
HMPREF1058_RS03195 +0.6 3.3 V-type ATP synthase subunit I compare
HMPREF1058_RS21045 +0.6 2.2 hypothetical protein compare
HMPREF1058_RS06420 +0.6 1.2 type II toxin-antitoxin system HicA family toxin compare
HMPREF1058_RS01925 +0.6 2.1 helix-turn-helix domain-containing protein compare
HMPREF1058_RS10860 +0.6 4.8 glycosyltransferase family 8 protein compare
HMPREF1058_RS04430 +0.6 3.4 alpha-1,2-fucosyltransferase compare
HMPREF1058_RS21695 +0.6 1.5 hypothetical protein compare
HMPREF1058_RS04340 +0.6 1.8 hypothetical protein compare
HMPREF1058_RS07545 +0.6 1.6 hypothetical protein compare
HMPREF1058_RS13065 +0.6 3.7 hypothetical protein compare
HMPREF1058_RS03435 +0.6 1.8 DNA-binding protein compare
HMPREF1058_RS05360 +0.6 1.0 helix-turn-helix domain-containing protein compare
HMPREF1058_RS11155 +0.6 2.7 PD-(D/E)XK nuclease domain-containing protein compare
HMPREF1058_RS10875 +0.6 4.0 glycosyltransferase compare
HMPREF1058_RS01065 +0.6 2.2 hypothetical protein compare
HMPREF1058_RS10815 +0.5 3.4 DUF4249 domain-containing protein compare
HMPREF1058_RS10705 +0.5 4.1 hypothetical protein compare
HMPREF1058_RS05190 +0.5 1.4 hypothetical protein compare
HMPREF1058_RS04950 +0.5 0.6 hypothetical protein compare
HMPREF1058_RS12640 +0.5 2.7 hypothetical protein compare
HMPREF1058_RS05950 +0.5 2.0 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS05035 +0.5 3.6 C69 family dipeptidase compare
HMPREF1058_RS06265 +0.5 2.6 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS16715 +0.5 1.0 hypothetical protein compare
HMPREF1058_RS01235 +0.5 2.7 phosphoserine phosphatase SerB compare
HMPREF1058_RS06375 +0.5 1.3 glutaminase A compare
HMPREF1058_RS08765 +0.5 3.8 AMP-binding protein compare
HMPREF1058_RS08940 +0.5 1.2 RNA polymerase sigma-70 factor compare
HMPREF1058_RS01720 +0.5 2.4 lysine exporter LysO family protein compare
HMPREF1058_RS05725 +0.5 1.3 hypothetical protein compare
HMPREF1058_RS0120025 +0.5 2.1 DUF975 family protein compare
HMPREF1058_RS02085 +0.5 2.9 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS16525 +0.5 1.1 hypothetical protein compare
HMPREF1058_RS05465 +0.5 1.7 DNA-binding protein compare
HMPREF1058_RS05625 +0.5 2.8 HipA domain-containing protein compare
HMPREF1058_RS09915 +0.5 1.6 conjugative transposon protein TraM compare
HMPREF1058_RS16405 +0.5 2.2 PepSY-like domain-containing protein compare
HMPREF1058_RS03275 +0.5 1.6 hypothetical protein compare
HMPREF1058_RS17105 +0.5 2.3 hypothetical protein compare
HMPREF1058_RS05945 +0.5 3.3 DUF4836 family protein compare
HMPREF1058_RS01330 +0.5 2.5 hypothetical protein compare
HMPREF1058_RS14315 +0.5 1.2 thioesterase family protein compare
HMPREF1058_RS05215 +0.5 2.2 GtrA family protein compare
HMPREF1058_RS01370 +0.5 2.6 hypothetical protein compare
HMPREF1058_RS11240 +0.5 1.9 GNAT family N-acetyltransferase compare
HMPREF1058_RS18010 +0.5 2.3 L-asparaginase 2 compare
HMPREF1058_RS05355 +0.5 2.0 helix-turn-helix domain-containing protein compare
HMPREF1058_RS02510 +0.5 3.4 DUF2027 domain-containing protein compare
HMPREF1058_RS10805 +0.5 2.2 FecR family protein compare
HMPREF1058_RS00465 +0.5 1.2 translation initiation factor compare
HMPREF1058_RS21550 +0.5 1.1 hypothetical protein compare
HMPREF1058_RS05720 +0.5 2.2 hypothetical protein compare
HMPREF1058_RS05075 +0.5 1.6 hypothetical protein compare
HMPREF1058_RS03935 +0.5 2.6 hypothetical protein compare
HMPREF1058_RS18925 +0.5 2.6 DEAD/DEAH box helicase compare
HMPREF1058_RS12570 +0.5 1.6 HIT family protein compare
HMPREF1058_RS00355 +0.5 2.9 hypothetical protein compare
HMPREF1058_RS01115 +0.5 1.8 hypothetical protein compare
HMPREF1058_RS09860 +0.5 0.6 DUF3408 domain-containing protein compare
HMPREF1058_RS18980 +0.5 2.1 SGNH/GDSL hydrolase family protein compare
HMPREF1058_RS13020 +0.5 2.2 hypothetical protein compare
HMPREF1058_RS16565 +0.5 1.5 TlpA family protein disulfide reductase compare
HMPREF1058_RS01820 +0.5 1.0 hypothetical protein compare
HMPREF1058_RS09895 +0.4 2.3 DUF4141 domain-containing protein compare
HMPREF1058_RS16600 +0.4 1.6 PepSY-associated TM helix domain-containing protein compare
HMPREF1058_RS10955 +0.4 2.7 phosphatase PAP2 family protein compare
HMPREF1058_RS06255 +0.4 2.3 hypothetical protein compare
HMPREF1058_RS13425 +0.4 2.7 HU family DNA-binding protein compare
HMPREF1058_RS16020 +0.4 1.3 hypothetical protein compare
HMPREF1058_RS11430 +0.4 2.5 flavin reductase compare
HMPREF1058_RS11015 +0.4 3.3 hypothetical protein compare
HMPREF1058_RS16485 +0.4 2.9 cyclomaltodextrinase C-terminal domain-containing protein compare
HMPREF1058_RS01360 +0.4 2.4 DUF3871 family protein compare
HMPREF1058_RS07155 +0.4 1.8 DUF4891 domain-containing protein compare
HMPREF1058_RS04255 +0.4 1.9 MgtC/SapB family protein compare
HMPREF1058_RS21480 +0.4 0.9 hypothetical protein compare
HMPREF1058_RS21140 +0.4 0.8 ISAs1 family transposase compare
HMPREF1058_RS12305 +0.4 2.9 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS03655 +0.4 2.0 ABC transporter ATP-binding protein compare
HMPREF1058_RS18750 +0.4 2.1 hypothetical protein compare
HMPREF1058_RS11400 +0.4 1.7 TatD family hydrolase compare
HMPREF1058_RS01640 +0.4 3.5 BamA/TamA family outer membrane protein compare
HMPREF1058_RS03460 +0.4 1.7 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
HMPREF1058_RS16955 +0.4 1.4 cold shock domain-containing protein compare
HMPREF1058_RS04515 +0.4 0.8 hypothetical protein compare
HMPREF1058_RS18610 +0.4 1.8 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS21620 +0.4 0.7 hypothetical protein compare
HMPREF1058_RS04555 +0.4 1.3 YqaJ viral recombinase family protein compare
HMPREF1058_RS03930 +0.4 2.0 ABC transporter permease compare
HMPREF1058_RS16455 +0.4 2.3 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS13060 +0.4 1.5 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS12600 +0.4 1.2 hypothetical protein compare
HMPREF1058_RS07480 +0.4 2.6 nucleotidyltransferase family protein compare
HMPREF1058_RS18320 +0.4 1.8 DUF3826 domain-containing protein compare
HMPREF1058_RS21625 +0.4 1.0 hypothetical protein compare
HMPREF1058_RS01530 +0.4 1.0 NAD(P)H-dependent oxidoreductase compare
HMPREF1058_RS18400 +0.4 1.8 RidA family protein compare
HMPREF1058_RS01425 +0.4 2.6 sirohydrochlorin cobaltochelatase compare
HMPREF1058_RS01435 +0.4 2.6 anaerobic ribonucleoside-triphosphate reductase compare
HMPREF1058_RS04560 +0.4 1.0 hypothetical protein compare
HMPREF1058_RS17175 +0.4 2.0 MarC family protein compare
HMPREF1058_RS19220 +0.4 1.8 tape measure protein compare
HMPREF1058_RS00690 +0.4 2.0 DUF3332 domain-containing protein compare
HMPREF1058_RS02365 +0.4 3.3 DUF4981 domain-containing protein compare
HMPREF1058_RS10305 +0.4 1.5 hypothetical protein compare
HMPREF1058_RS02925 +0.4 1.9 peroxide stress protein YaaA compare
HMPREF1058_RS17335 +0.4 3.0 hydroxymethylglutaryl-CoA lyase compare
HMPREF1058_RS06005 +0.4 1.2 GlsB/YeaQ/YmgE family stress response membrane protein compare
HMPREF1058_RS05965 +0.4 1.6 hypothetical protein compare
HMPREF1058_RS13045 +0.4 1.3 hypothetical protein compare
HMPREF1058_RS14065 +0.4 2.5 lytic transglycosylase domain-containing protein compare
HMPREF1058_RS11520 +0.4 1.0 D-tyrosyl-tRNA(Tyr) deacylase compare
HMPREF1058_RS03175 +0.4 2.0 DUF2764 domain-containing protein compare
HMPREF1058_RS02850 +0.4 2.5 DUF1566 domain-containing protein compare
HMPREF1058_RS12605 +0.4 2.5 HAD family hydrolase compare
HMPREF1058_RS06725 +0.4 2.7 glycosyl transferase compare
HMPREF1058_RS11485 +0.4 1.9 ketopantoate reductase family protein compare
HMPREF1058_RS15935 +0.4 1.7 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
HMPREF1058_RS05955 +0.4 2.0 hypothetical protein compare
HMPREF1058_RS05345 +0.4 1.6 site-specific integrase compare
HMPREF1058_RS09765 +0.4 1.3 hypothetical protein compare
HMPREF1058_RS11585 +0.4 3.0 hypothetical protein compare
HMPREF1058_RS13140 +0.4 2.0 sugar transferase compare
HMPREF1058_RS10125 +0.4 1.9 AAA family ATPase compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in mouse experiments

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono across organisms