Experiment set3S318 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS12490 -9.2 -6.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS09675 -7.7 -7.5 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS14610 -7.6 -7.4 adenylosuccinate synthase compare
HMPREF1058_RS15075 -7.4 -8.9 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS06195 -6.4 -4.4 diaminopimelate decarboxylase compare
HMPREF1058_RS10995 -6.3 -10.5 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS07955 -6.1 -20.6 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS14770 -6.1 -9.3 prephenate dehydrogenase compare
HMPREF1058_RS10840 -6.0 -4.8 hypothetical protein compare
HMPREF1058_RS11730 -5.8 -3.9 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS11040 -5.6 -13.1 polysaccharide deacetylase family protein compare
HMPREF1058_RS14785 -5.6 -10.6 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS08025 -5.5 -13.2 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS16760 -5.5 -6.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS16500 -5.3 -7.3 OadG family protein compare
HMPREF1058_RS06310 -5.0 -3.5 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS07655 -4.9 -2.7 hypothetical protein compare
HMPREF1058_RS16730 -4.8 -3.3 chorismate synthase compare
HMPREF1058_RS06600 -4.6 -6.2 DedA family protein compare
HMPREF1058_RS11310 -4.5 -9.0 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS13970 -4.4 -4.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS14035 -4.4 -3.0 hypothetical protein compare
HMPREF1058_RS14790 -4.3 -17.5 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS00595 -4.3 -6.2 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS14005 -4.3 -5.8 3-dehydroquinate synthase compare
HMPREF1058_RS06870 -4.3 -18.3 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS06875 -4.2 -11.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HMPREF1058_RS08535 -4.0 -3.8 elongation factor P compare
HMPREF1058_RS16750 -4.0 -2.7 shikimate dehydrogenase compare
HMPREF1058_RS06560 -4.0 -14.6 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS15395 -3.9 -2.6 dihydroorotase compare
HMPREF1058_RS08840 -3.9 -16.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS10835 -3.9 -12.4 UDP-galactopyranose mutase compare
HMPREF1058_RS16495 -3.8 -6.7 biotin/lipoyl-binding protein compare
HMPREF1058_RS16505 -3.8 -14.6 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS16625 -3.7 -12.5 hypothetical protein compare
HMPREF1058_RS03970 -3.6 -2.5 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS12105 -3.6 -4.2 shikimate kinase compare
HMPREF1058_RS06190 -3.6 -9.6 aspartate kinase compare
HMPREF1058_RS04075 -3.6 -5.3 DUF58 domain-containing protein compare
HMPREF1058_RS16845 -3.4 -9.7 SurA N-terminal domain-containing protein compare
HMPREF1058_RS02405 -3.4 -26.1 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS02410 -3.4 -26.1 methylmalonyl-CoA mutase compare
HMPREF1058_RS03535 -3.4 -2.3 UvrD-helicase domain-containing protein compare
HMPREF1058_RS18265 -3.4 -5.0 aspartate 1-decarboxylase compare
HMPREF1058_RS12115 -3.4 -18.2 acetylglutamate kinase compare
HMPREF1058_RS09585 -3.3 -22.9 argininosuccinate lyase compare
HMPREF1058_RS12780 -3.3 -19.0 M20 family metallo-hydrolase compare
HMPREF1058_RS11890 -3.3 -5.4 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS04070 -3.3 -9.2 hypothetical protein compare
HMPREF1058_RS09445 -3.3 -2.8 tyrosine-type recombinase/integrase compare
HMPREF1058_RS03510 -3.2 -8.1 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS03085 -3.2 -3.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS08295 -3.2 -10.8 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS17155 -3.2 -5.6 dCMP deaminase family protein compare
HMPREF1058_RS14795 -3.2 -9.9 prephenate dehydratase compare
HMPREF1058_RS01800 -3.2 -5.1 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS17885 -3.1 -20.9 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS04080 -3.1 -8.3 AAA family ATPase compare
HMPREF1058_RS05140 -3.0 -6.5 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS16620 -3.0 -15.3 GGGtGRT protein compare
HMPREF1058_RS17080 -2.9 -2.0 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS08835 -2.9 -13.4 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS11490 -2.8 -8.2 redox-regulated ATPase YchF compare
HMPREF1058_RS04050 -2.8 -9.4 protein BatD compare
HMPREF1058_RS17130 -2.8 -5.8 tetratricopeptide repeat protein compare
HMPREF1058_RS10850 -2.8 -14.6 glycosyltransferase family 2 protein compare
HMPREF1058_RS14200 -2.8 -16.1 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS10255 -2.7 -4.6 hypothetical protein compare
HMPREF1058_RS09180 -2.7 -8.3 hypothetical protein compare
HMPREF1058_RS09185 -2.6 -6.8 DUF4252 domain-containing protein compare
HMPREF1058_RS04375 -2.6 -11.5 carbon-nitrogen hydrolase compare
HMPREF1058_RS08855 -2.6 -8.4 arginine repressor compare
HMPREF1058_RS06380 -2.6 -10.7 copper homeostasis protein CutC compare
HMPREF1058_RS02880 -2.5 -17.0 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS09590 -2.5 -9.5 hypothetical protein compare
HMPREF1058_RS13655 -2.4 -19.1 cardiolipin synthase compare
HMPREF1058_RS14465 -2.4 -4.4 enoyl-ACP reductase compare
HMPREF1058_RS12505 -2.4 -1.7 RNA polymerase factor sigma-54 compare
HMPREF1058_RS14220 -2.4 -4.7 energy transducer TonB compare
HMPREF1058_RS04065 -2.4 -2.2 VWA domain-containing protein compare
HMPREF1058_RS08845 -2.4 -12.5 argininosuccinate synthase compare
HMPREF1058_RS08640 -2.4 -6.8 acetylornithine carbamoyltransferase compare
HMPREF1058_RS06040 -2.4 -9.8 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS10920 -2.4 -2.7 viroplasmin family protein compare
HMPREF1058_RS03530 -2.3 -2.2 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS14550 -2.3 -15.0 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS07670 -2.3 -4.0 HAMP domain-containing histidine kinase compare
HMPREF1058_RS11205 -2.3 -2.2 radical SAM protein compare
HMPREF1058_RS00625 -2.3 -12.2 MFS transporter compare
HMPREF1058_RS16510 -2.2 -7.0 methylmalonyl-CoA epimerase compare
HMPREF1058_RS07190 -2.2 -10.6 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS13965 -2.2 -3.2 hypothetical protein compare
HMPREF1058_RS17050 -2.1 -9.5 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS14565 -2.1 -13.6 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS15375 -2.1 -2.8 DUF4369 domain-containing protein compare
HMPREF1058_RS01655 -2.1 -8.6 DUF4296 domain-containing protein compare
HMPREF1058_RS02975 -2.1 -4.7 hypothetical protein compare
HMPREF1058_RS03800 -2.1 -11.9 serine hydroxymethyltransferase compare
HMPREF1058_RS10710 -2.0 -13.4 DUF3108 domain-containing protein compare
HMPREF1058_RS09750 -2.0 -10.8 glycosyltransferase compare
HMPREF1058_RS07635 -2.0 -4.8 50S ribosomal protein L9 compare
HMPREF1058_RS16685 -2.0 -15.7 methionine synthase compare
HMPREF1058_RS03000 -2.0 -12.5 IMP dehydrogenase compare
HMPREF1058_RS10270 -1.9 -6.7 hypothetical protein compare
HMPREF1058_RS14075 -1.9 -5.5 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS11915 -1.9 -2.8 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS02170 -1.9 -8.7 hypothetical protein compare
HMPREF1058_RS14835 -1.9 -7.7 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS14555 -1.9 -2.7 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS06410 -1.8 -5.2 elongation factor 4 compare
HMPREF1058_RS10290 -1.8 -2.6 hypothetical protein compare
HMPREF1058_RS02100 -1.8 -11.7 efflux RND transporter permease subunit compare
HMPREF1058_RS01745 -1.8 -7.4 PorT family protein compare
HMPREF1058_RS01460 -1.8 -4.1 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS10295 -1.8 -2.0 hypothetical protein compare
HMPREF1058_RS09745 -1.8 -11.9 glycosyltransferase compare
HMPREF1058_RS15565 -1.8 -14.2 hypothetical protein compare
HMPREF1058_RS00590 -1.8 -7.2 hypothetical protein compare
HMPREF1058_RS12070 -1.8 -5.0 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS15390 -1.8 -5.9 5-methyltetrahydrofolate--homocysteine methyltransferase compare
HMPREF1058_RS02095 -1.7 -8.2 efflux transporter outer membrane subunit compare
HMPREF1058_RS18695 -1.7 -3.3 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS10275 -1.7 -11.4 RNA-splicing ligase RtcB compare
HMPREF1058_RS15520 -1.7 -5.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS17060 -1.7 -8.9 HAD family hydrolase compare
HMPREF1058_RS14490 -1.7 -12.9 S9 family peptidase compare
HMPREF1058_RS15965 -1.7 -6.0 recombinase RecA compare
HMPREF1058_RS02750 -1.7 -1.9 BamA/TamA family outer membrane protein compare
HMPREF1058_RS11925 -1.7 -3.7 DUF2975 domain-containing protein compare
HMPREF1058_RS07960 -1.7 -13.4 response regulator compare
HMPREF1058_RS18205 -1.7 -6.0 ferrous iron transport protein B compare
HMPREF1058_RS17045 -1.7 -5.7 hypothetical protein compare
HMPREF1058_RS11930 -1.6 -6.7 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS03305 -1.6 -8.9 UvrD-helicase domain-containing protein compare
HMPREF1058_RS14745 -1.6 -11.4 ABC transporter substrate-binding protein compare
HMPREF1058_RS04370 -1.6 -7.1 agmatine deiminase family protein compare
HMPREF1058_RS09685 -1.6 -12.7 tetratricopeptide repeat protein compare
HMPREF1058_RS00630 -1.6 -9.3 carbohydrate kinase compare
HMPREF1058_RS15920 -1.6 -2.4 hypothetical protein compare
HMPREF1058_RS17040 -1.6 -6.7 NTP transferase domain-containing protein compare
HMPREF1058_RS09680 -1.6 -3.8 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS08770 -1.6 -3.3 cupin domain-containing protein compare
HMPREF1058_RS08645 -1.6 -5.1 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS13350 -1.5 -10.1 Trk system potassium transporter TrkA compare
HMPREF1058_RS12455 -1.5 -2.7 dUTP diphosphatase compare
HMPREF1058_RS00560 -1.5 -3.5 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS01665 -1.5 -4.9 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS14740 -1.5 -8.9 iron ABC transporter permease compare
HMPREF1058_RS00205 -1.5 -10.6 cation:proton antiporter compare
HMPREF1058_RS07195 -1.5 -5.5 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS09000 -1.5 -7.6 FecR domain-containing protein compare
HMPREF1058_RS13635 -1.5 -5.5 gliding motility lipoprotein GldH compare
HMPREF1058_RS14700 -1.5 -4.7 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS04025 -1.4 -8.6 hypothetical protein compare
HMPREF1058_RS14755 -1.4 -11.5 hypothetical protein compare
HMPREF1058_RS06085 -1.4 -11.5 hypothetical protein compare
HMPREF1058_RS15665 -1.4 -6.7 MFS transporter compare
HMPREF1058_RS01650 -1.4 -6.3 hypothetical protein compare
HMPREF1058_RS17170 -1.4 -8.0 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS07215 -1.4 -8.8 two-component sensor histidine kinase compare
HMPREF1058_RS11920 -1.4 -6.1 DUF2975 domain-containing protein compare
HMPREF1058_RS15750 -1.4 -8.8 glucosaminidase domain-containing protein compare
HMPREF1058_RS07040 -1.4 -9.2 tetratricopeptide repeat protein compare
HMPREF1058_RS09610 -1.4 -7.9 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS10910 -1.4 -11.3 glycosyltransferase family 39 protein compare
HMPREF1058_RS05780 -1.4 -9.4 PD40 domain-containing protein compare
HMPREF1058_RS05145 -1.3 -7.8 ATP-binding protein compare
HMPREF1058_RS18675 -1.3 -4.8 ATP synthase F0 subunit C compare
HMPREF1058_RS07210 -1.3 -6.4 response regulator transcription factor compare
HMPREF1058_RS02885 -1.3 -9.4 response regulator transcription factor compare
HMPREF1058_RS18635 -1.3 -2.4 PepSY-like domain-containing protein compare
HMPREF1058_RS02105 -1.3 -5.5 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS14830 -1.3 -1.8 RecQ family ATP-dependent DNA helicase compare
HMPREF1058_RS14660 -1.3 -8.1 TolC family protein compare
HMPREF1058_RS06225 -1.3 -4.5 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS14760 -1.3 -11.2 TonB-dependent receptor compare
HMPREF1058_RS08850 -1.3 -8.2 N-acetyltransferase compare
HMPREF1058_RS17775 -1.3 -4.3 hypothetical protein compare
HMPREF1058_RS13910 -1.3 -4.2 nucleoside deaminase compare
HMPREF1058_RS11535 -1.3 -7.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS19090 -1.3 -1.3 tRNA-Phe compare
HMPREF1058_RS06880 -1.3 -7.1 amidophosphoribosyltransferase compare
HMPREF1058_RS01270 -1.3 -6.3 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1058_RS13595 -1.3 -8.7 phosphotransferase compare
HMPREF1058_RS14225 -1.3 -6.4 polyprenyl synthetase family protein compare
HMPREF1058_RS12320 -1.2 -4.7 glycoside hydrolase family 13 protein compare
HMPREF1058_RS08320 -1.2 -2.9 MotA/TolQ/ExbB proton channel family protein compare
HMPREF1058_RS0119830 -1.2 -1.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS08315 -1.2 -3.9 biopolymer transporter ExbD compare
HMPREF1058_RS09460 -1.2 -8.3 gamma carbonic anhydrase family protein compare
HMPREF1058_RS16490 -1.2 -7.2 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1058_RS06060 -1.2 -7.9 YegS/Rv2252/BmrU family lipid kinase compare
HMPREF1058_RS01695 -1.2 -6.1 LacI family DNA-binding transcriptional regulator compare
HMPREF1058_RS14735 -1.2 -6.4 ABC transporter ATP-binding protein compare
HMPREF1058_RS03980 -1.2 -1.7 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS17950 -1.2 -6.6 biotin synthase BioB compare
HMPREF1058_RS09620 -1.2 -5.0 hypothetical protein compare
HMPREF1058_RS07200 -1.2 -6.5 tryptophan synthase subunit alpha compare
HMPREF1058_RS16900 -1.2 -4.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in mouse experiments

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono across organisms