Experiment set3S318 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS14020 +1.6 12.8 cardiolipin synthase compare
HMPREF1058_RS02260 +1.5 11.4 hypothetical protein compare
HMPREF1058_RS16830 +1.4 9.1 acyl-ACP thioesterase compare
HMPREF1058_RS10230 +1.4 3.9 hypothetical protein compare
HMPREF1058_RS15100 +1.2 5.1 hypothetical protein compare
HMPREF1058_RS07310 +1.2 8.5 glucosamine-6-phosphate deaminase compare
HMPREF1058_RS02250 +1.2 10.6 hypothetical protein compare
HMPREF1058_RS02800 +1.2 8.8 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS15090 +1.1 5.6 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS02255 +1.1 6.7 DUF3244 domain-containing protein compare
HMPREF1058_RS16515 +1.1 6.0 GNAT family N-acetyltransferase compare
HMPREF1058_RS21310 +1.0 3.3 hypothetical protein compare
HMPREF1058_RS17815 +1.0 6.1 MFS transporter compare
HMPREF1058_RS04545 +1.0 4.3 hypothetical protein compare
HMPREF1058_RS15080 +1.0 5.2 glycoside hydrolase family 97 protein compare
HMPREF1058_RS02220 +0.9 5.0 branched-chain amino acid aminotransferase compare
HMPREF1058_RS11825 +0.9 3.9 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS03170 +0.9 4.8 hypothetical protein compare
HMPREF1058_RS02245 +0.8 3.0 cytidylate kinase-like family protein compare
HMPREF1058_RS15460 +0.8 4.8 amidohydrolase compare
HMPREF1058_RS05415 +0.8 2.7 Hsp20/alpha crystallin family protein compare
HMPREF1058_RS0119615 +0.8 1.9 hypothetical protein compare
HMPREF1058_RS03295 +0.7 1.3 sulfur carrier protein ThiS compare
HMPREF1058_RS03195 +0.7 4.8 V-type ATP synthase subunit I compare
HMPREF1058_RS16815 +0.7 4.2 dihydroxy-acid dehydratase compare
HMPREF1058_RS16820 +0.7 5.7 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS11270 +0.7 5.8 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS05695 +0.7 3.0 helix-turn-helix domain-containing protein compare
HMPREF1058_RS05200 +0.7 4.2 MaoC family dehydratase compare
HMPREF1058_RS11165 +0.7 5.2 glycoside hydrolase family 127 protein compare
HMPREF1058_RS18570 +0.7 3.3 GNAT family N-acetyltransferase compare
HMPREF1058_RS21380 +0.7 1.9 hypothetical protein compare
HMPREF1058_RS04115 +0.7 2.4 CinA family protein compare
HMPREF1058_RS11880 +0.7 6.3 hypothetical protein compare
HMPREF1058_RS16250 +0.7 5.4 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS03185 +0.7 5.3 V-type ATP synthase subunit B compare
HMPREF1058_RS03180 +0.7 5.1 V-type ATP synthase subunit A compare
HMPREF1058_RS01235 +0.7 3.6 phosphoserine phosphatase SerB compare
HMPREF1058_RS05105 +0.6 1.5 hypothetical protein compare
HMPREF1058_RS15430 +0.6 5.1 aspartate-alanine antiporter compare
HMPREF1058_RS0119380 +0.6 2.0 IS66 family insertion sequence element accessory protein TnpB compare
HMPREF1058_RS03200 +0.6 2.5 V-type ATP synthase subunit K compare
HMPREF1058_RS21575 +0.6 1.6 mobilization protein compare
HMPREF1058_RS0119645 +0.6 3.8 AAA family ATPase compare
HMPREF1058_RS06265 +0.6 3.8 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS10955 +0.6 3.5 phosphatase PAP2 family protein compare
HMPREF1058_RS06070 +0.6 1.9 ferritin compare
HMPREF1058_RS06375 +0.6 2.7 glutaminase A compare
HMPREF1058_RS01625 +0.6 1.5 hypothetical protein compare
HMPREF1058_RS15085 +0.6 4.0 TonB-dependent receptor compare
HMPREF1058_RS02485 +0.6 3.6 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS04270 +0.6 1.3 ferredoxin compare
HMPREF1058_RS16255 +0.6 4.1 isochorismate synthase compare
HMPREF1058_RS18565 +0.6 1.1 hypothetical protein compare
HMPREF1058_RS00515 +0.6 4.1 YicC family protein compare
HMPREF1058_RS02495 +0.6 3.6 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS15895 +0.6 2.3 transcriptional repressor compare
HMPREF1058_RS03190 +0.5 2.5 V-type ATP synthase subunit D compare
HMPREF1058_RS21725 +0.5 2.0 hypothetical protein compare
HMPREF1058_RS13045 +0.5 2.4 hypothetical protein compare
HMPREF1058_RS05185 +0.5 3.3 hypothetical protein compare
HMPREF1058_RS05790 +0.5 1.5 hypothetical protein compare
HMPREF1058_RS17370 +0.5 2.7 UpxY family transcription antiterminator compare
HMPREF1058_RS16675 +0.5 3.6 DUF1282 family protein compare
HMPREF1058_RS09905 +0.5 1.7 conjugative transposon protein TraK compare
HMPREF1058_RS04950 +0.5 1.3 hypothetical protein compare
HMPREF1058_RS02320 +0.5 1.7 hypothetical protein compare
HMPREF1058_RS03275 +0.5 1.6 hypothetical protein compare
HMPREF1058_RS03175 +0.5 2.8 DUF2764 domain-containing protein compare
HMPREF1058_RS0120025 +0.5 2.9 DUF975 family protein compare
HMPREF1058_RS04445 +0.5 0.7 porin family protein compare
HMPREF1058_RS04745 +0.5 1.4 helix-turn-helix domain-containing protein compare
HMPREF1058_RS19000 +0.5 2.1 type II toxin-antitoxin system RelE/ParE family toxin compare
HMPREF1058_RS14065 +0.5 3.6 lytic transglycosylase domain-containing protein compare
HMPREF1058_RS04600 +0.5 1.1 hypothetical protein compare
HMPREF1058_RS04575 +0.5 1.3 hypothetical protein compare
HMPREF1058_RS15095 +0.5 2.6 hypothetical protein compare
HMPREF1058_RS10890 +0.5 3.2 glycosyltransferase family 2 protein compare
HMPREF1058_RS01820 +0.5 1.1 hypothetical protein compare
HMPREF1058_RS21070 +0.4 1.8 potassium-transporting ATPase subunit F compare
HMPREF1058_RS10885 +0.4 3.4 glycosyltransferase compare
HMPREF1058_RS18365 +0.4 2.8 methylcobamide--CoM methyltransferase compare
HMPREF1058_RS10875 +0.4 3.5 glycosyltransferase compare
HMPREF1058_RS18925 +0.4 2.6 DEAD/DEAH box helicase compare
HMPREF1058_RS03490 +0.4 2.2 glycosyltransferase family 4 protein compare
HMPREF1058_RS01855 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS21355 +0.4 1.5 mobilization protein compare
HMPREF1058_RS14730 +0.4 3.1 threonine synthase compare
HMPREF1058_RS06945 +0.4 0.8 tRNA-Thr compare
HMPREF1058_RS15690 +0.4 3.2 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS06460 +0.4 1.3 hypothetical protein compare
HMPREF1058_RS16420 +0.4 3.2 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS01475 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS10120 +0.4 1.3 hypothetical protein compare
HMPREF1058_RS16525 +0.4 1.4 hypothetical protein compare
HMPREF1058_RS05825 +0.4 2.8 thiamine diphosphokinase compare
HMPREF1058_RS05725 +0.4 0.9 hypothetical protein compare
HMPREF1058_RS05820 +0.4 2.3 nicotinamide mononucleotide transporter compare
HMPREF1058_RS19025 +0.4 0.9 hypothetical protein compare
HMPREF1058_RS01720 +0.4 1.9 lysine exporter LysO family protein compare
HMPREF1058_RS21210 +0.4 1.2 hypothetical protein compare
HMPREF1058_RS10330 +0.4 1.8 hypothetical protein compare
HMPREF1058_RS15440 +0.4 3.0 tetratricopeptide repeat protein compare
HMPREF1058_RS04515 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS21045 +0.4 1.7 hypothetical protein compare
HMPREF1058_RS10305 +0.4 2.1 hypothetical protein compare
HMPREF1058_RS01085 +0.4 2.6 DUF134 domain-containing protein compare
HMPREF1058_RS04580 +0.4 0.9 hypothetical protein compare
HMPREF1058_RS04740 +0.4 2.1 DUF5606 domain-containing protein compare
HMPREF1058_RS04430 +0.4 2.1 alpha-1,2-fucosyltransferase compare
HMPREF1058_RS03655 +0.4 2.0 ABC transporter ATP-binding protein compare
HMPREF1058_RS15230 +0.4 1.7 DUF4348 domain-containing protein compare
HMPREF1058_RS03585 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS05950 +0.4 2.0 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS17015 +0.4 2.3 SpoIID/LytB domain-containing protein compare
HMPREF1058_RS01065 +0.4 1.8 hypothetical protein compare
HMPREF1058_RS18870 +0.4 0.7 hypothetical protein compare
HMPREF1058_RS21590 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS09860 +0.4 0.8 DUF3408 domain-containing protein compare
HMPREF1058_RS11275 +0.4 1.7 hypothetical protein compare
HMPREF1058_RS12640 +0.4 2.1 hypothetical protein compare
HMPREF1058_RS10615 +0.4 1.5 acyl carrier protein compare
HMPREF1058_RS07365 +0.4 2.4 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS02335 +0.4 0.8 hypothetical protein compare
HMPREF1058_RS03250 +0.4 1.9 hypothetical protein compare
HMPREF1058_RS09895 +0.4 2.2 DUF4141 domain-containing protein compare
HMPREF1058_RS13640 +0.4 2.2 hypothetical protein compare
HMPREF1058_RS11430 +0.4 1.9 flavin reductase compare
HMPREF1058_RS03075 +0.4 1.7 DNA helicase RecQ compare
HMPREF1058_RS04700 +0.4 1.8 RNA-binding S4 domain-containing protein compare
HMPREF1058_RS03485 +0.4 1.6 RloB domain-containing protein compare
HMPREF1058_RS03580 +0.4 1.1 UpxY family transcription antiterminator compare
HMPREF1058_RS10860 +0.4 3.0 glycosyltransferase family 8 protein compare
HMPREF1058_RS01370 +0.4 2.3 hypothetical protein compare
HMPREF1058_RS20715 +0.4 2.8 hypothetical protein compare
HMPREF1058_RS01925 +0.3 1.6 helix-turn-helix domain-containing protein compare
HMPREF1058_RS06725 +0.3 2.5 glycosyl transferase compare
HMPREF1058_RS05805 +0.3 2.7 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
HMPREF1058_RS18810 +0.3 1.4 phosphohydrolase compare
HMPREF1058_RS01330 +0.3 2.1 hypothetical protein compare
HMPREF1058_RS12570 +0.3 1.5 HIT family protein compare
HMPREF1058_RS07370 +0.3 2.8 N-acetylglucosamine-6-phosphate deacetylase compare
HMPREF1058_RS13785 +0.3 2.7 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS05940 +0.3 1.8 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
HMPREF1058_RS17345 +0.3 1.8 CatB-related O-acetyltransferase compare
HMPREF1058_RS03935 +0.3 1.9 hypothetical protein compare
HMPREF1058_RS10815 +0.3 2.5 DUF4249 domain-containing protein compare
HMPREF1058_RS00640 +0.3 1.3 amino acid-binding protein compare
HMPREF1058_RS21475 +0.3 0.6 smalltalk protein compare
HMPREF1058_RS20335 +0.3 1.5 DpnD/PcfM family protein compare
HMPREF1058_RS21695 +0.3 1.0 hypothetical protein compare
HMPREF1058_RS18770 +0.3 0.7 hypothetical protein compare
HMPREF1058_RS19120 +0.3 0.6 hypothetical protein compare
HMPREF1058_RS01715 +0.3 1.6 LysO family transporter compare
HMPREF1058_RS09775 +0.3 0.6 helix-turn-helix domain-containing protein compare
HMPREF1058_RS11815 +0.3 2.4 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS09965 +0.3 1.3 DUF3873 domain-containing protein compare
HMPREF1058_RS06180 +0.3 1.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS13065 +0.3 2.6 hypothetical protein compare
HMPREF1058_RS21140 +0.3 0.8 ISAs1 family transposase compare
HMPREF1058_RS08075 +0.3 1.7 hypothetical protein compare
HMPREF1058_RS05955 +0.3 2.0 hypothetical protein compare
HMPREF1058_RS03710 +0.3 1.9 hypothetical protein compare
HMPREF1058_RS11690 +0.3 2.1 acyl-CoA thioesterase compare
HMPREF1058_RS06905 +0.3 1.5 hypothetical protein compare
HMPREF1058_RS06420 +0.3 1.1 type II toxin-antitoxin system HicA family toxin compare
HMPREF1058_RS03435 +0.3 1.5 DNA-binding protein compare
HMPREF1058_RS05480 +0.3 1.5 helix-turn-helix domain-containing protein compare
HMPREF1058_RS13900 +0.3 1.0 YraN family protein compare
HMPREF1058_RS00465 +0.3 1.0 translation initiation factor compare
HMPREF1058_RS03930 +0.3 1.7 ABC transporter permease compare
HMPREF1058_RS04130 +0.3 0.7 winged helix-turn-helix domain-containing protein compare
HMPREF1058_RS05345 +0.3 1.4 site-specific integrase compare
HMPREF1058_RS14315 +0.3 1.4 thioesterase family protein compare
HMPREF1058_RS01845 +0.3 0.9 site-specific integrase compare
HMPREF1058_RS16530 +0.3 1.7 Rossmann-like and DUF2520 domain-containing protein compare
HMPREF1058_RS01630 +0.3 2.1 hypothetical protein compare
HMPREF1058_RS18885 +0.3 1.8 hypothetical protein compare
HMPREF1058_RS01425 +0.3 2.2 sirohydrochlorin cobaltochelatase compare
HMPREF1058_RS14355 +0.3 1.4 GNAT family N-acetyltransferase compare
HMPREF1058_RS10975 +0.3 2.0 serine acetyltransferase compare
HMPREF1058_RS07090 +0.3 0.9 hypothetical protein compare
HMPREF1058_RS05945 +0.3 2.0 DUF4836 family protein compare
HMPREF1058_RS18065 +0.3 1.0 ABC transporter ATP-binding protein compare
HMPREF1058_RS17365 +0.3 1.2 nucleotidyltransferase domain-containing protein compare
HMPREF1058_RS02480 +0.3 1.7 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS04560 +0.3 0.7 hypothetical protein compare
HMPREF1058_RS15025 +0.3 2.0 FecR family protein compare
HMPREF1058_RS0119985 +0.3 1.7 NAD(P)H-dependent oxidoreductase subunit E compare
HMPREF1058_RS00200 +0.3 1.0 tRNA threonylcarbamoyladenosine dehydratase compare
HMPREF1058_RS18890 +0.3 1.0 DUF3127 domain-containing protein compare
HMPREF1058_RS12225 +0.3 1.6 GNAT family N-acetyltransferase compare
HMPREF1058_RS03685 +0.3 2.1 Fic family protein compare
HMPREF1058_RS02365 +0.3 2.5 DUF4981 domain-containing protein compare
HMPREF1058_RS01530 +0.3 0.9 NAD(P)H-dependent oxidoreductase compare
HMPREF1058_RS10125 +0.3 1.8 AAA family ATPase compare
HMPREF1058_RS00610 +0.3 1.8 DsbA family protein compare
HMPREF1058_RS09715 +0.3 1.9 hypothetical protein compare
HMPREF1058_RS13060 +0.3 1.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS17725 +0.3 2.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in mouse experiments

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono across organisms