Experiment set3S306 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day1

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS09675 -7.7 -7.5 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS14610 -7.5 -10.3 adenylosuccinate synthase compare
HMPREF1058_RS15075 -6.7 -14.4 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS06195 -6.3 -7.5 diaminopimelate decarboxylase compare
HMPREF1058_RS14785 -6.1 -9.3 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS10840 -6.0 -5.7 hypothetical protein compare
HMPREF1058_RS11730 -5.9 -4.0 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS14770 -5.8 -11.1 prephenate dehydrogenase compare
HMPREF1058_RS10995 -5.7 -14.5 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS07955 -5.5 -25.7 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS16760 -5.2 -7.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS06310 -5.0 -3.5 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS08025 -5.0 -13.5 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS07655 -4.9 -3.0 hypothetical protein compare
HMPREF1058_RS12490 -4.6 -9.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS06875 -4.5 -14.6 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HMPREF1058_RS14005 -4.4 -6.0 3-dehydroquinate synthase compare
HMPREF1058_RS12105 -4.4 -5.4 shikimate kinase compare
HMPREF1058_RS09445 -4.4 -3.0 tyrosine-type recombinase/integrase compare
HMPREF1058_RS11040 -4.3 -12.8 polysaccharide deacetylase family protein compare
HMPREF1058_RS08535 -4.2 -4.0 elongation factor P compare
HMPREF1058_RS06600 -4.2 -7.5 DedA family protein compare
HMPREF1058_RS14035 -4.2 -4.0 hypothetical protein compare
HMPREF1058_RS16730 -4.2 -5.6 chorismate synthase compare
HMPREF1058_RS16750 -4.1 -2.8 shikimate dehydrogenase compare
HMPREF1058_RS13970 -4.0 -5.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS06190 -4.0 -7.6 aspartate kinase compare
HMPREF1058_RS15395 -4.0 -2.7 dihydroorotase compare
HMPREF1058_RS11310 -4.0 -9.3 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS14790 -3.8 -16.6 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS06870 -3.8 -19.0 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS03970 -3.6 -2.5 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS16845 -3.6 -9.2 SurA N-terminal domain-containing protein compare
HMPREF1058_RS02880 -3.3 -21.8 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS10850 -3.1 -18.5 glycosyltransferase family 2 protein compare
HMPREF1058_RS14795 -3.1 -10.3 prephenate dehydratase compare
HMPREF1058_RS01800 -3.0 -5.3 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS18265 -3.0 -5.3 aspartate 1-decarboxylase compare
HMPREF1058_RS11890 -3.0 -5.9 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS17080 -3.0 -2.0 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS03535 -3.0 -2.8 UvrD-helicase domain-containing protein compare
HMPREF1058_RS03085 -2.9 -3.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS14465 -2.8 -3.8 enoyl-ACP reductase compare
HMPREF1058_RS17155 -2.8 -5.7 dCMP deaminase family protein compare
HMPREF1058_RS17885 -2.8 -20.8 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS00595 -2.8 -7.3 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS16625 -2.8 -11.7 hypothetical protein compare
HMPREF1058_RS11490 -2.8 -8.8 redox-regulated ATPase YchF compare
HMPREF1058_RS08295 -2.7 -10.6 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS03000 -2.7 -13.1 IMP dehydrogenase compare
HMPREF1058_RS08840 -2.7 -17.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS06560 -2.7 -14.5 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS03510 -2.6 -7.8 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS10835 -2.6 -12.1 UDP-galactopyranose mutase compare
HMPREF1058_RS05140 -2.6 -7.5 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS07190 -2.6 -8.2 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS16620 -2.6 -13.0 GGGtGRT protein compare
HMPREF1058_RS02405 -2.5 -19.4 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS12780 -2.5 -15.8 M20 family metallo-hydrolase compare
HMPREF1058_RS15390 -2.5 -6.8 5-methyltetrahydrofolate--homocysteine methyltransferase compare
HMPREF1058_RS04075 -2.4 -5.7 DUF58 domain-containing protein compare
HMPREF1058_RS14220 -2.4 -6.9 energy transducer TonB compare
HMPREF1058_RS02410 -2.4 -19.5 methylmalonyl-CoA mutase compare
HMPREF1058_RS09585 -2.4 -18.6 argininosuccinate lyase compare
HMPREF1058_RS16685 -2.4 -18.7 methionine synthase compare
HMPREF1058_RS03530 -2.4 -2.2 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS14200 -2.4 -14.3 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS17130 -2.4 -3.6 tetratricopeptide repeat protein compare
HMPREF1058_RS13910 -2.4 -10.0 nucleoside deaminase compare
HMPREF1058_RS07635 -2.4 -5.2 50S ribosomal protein L9 compare
HMPREF1058_RS12505 -2.4 -2.7 RNA polymerase factor sigma-54 compare
HMPREF1058_RS16500 -2.3 -7.9 OadG family protein compare
HMPREF1058_RS04070 -2.3 -8.4 hypothetical protein compare
HMPREF1058_RS10270 -2.3 -7.4 hypothetical protein compare
HMPREF1058_RS02885 -2.3 -14.4 response regulator transcription factor compare
HMPREF1058_RS00625 -2.2 -11.8 MFS transporter compare
HMPREF1058_RS08640 -2.2 -6.1 acetylornithine carbamoyltransferase compare
HMPREF1058_RS04065 -2.2 -3.3 VWA domain-containing protein compare
HMPREF1058_RS12115 -2.2 -12.1 acetylglutamate kinase compare
HMPREF1058_RS03800 -2.2 -13.0 serine hydroxymethyltransferase compare
HMPREF1058_RS06040 -2.2 -10.1 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS16510 -2.2 -7.1 methylmalonyl-CoA epimerase compare
HMPREF1058_RS04050 -2.1 -9.0 protein BatD compare
HMPREF1058_RS11205 -2.1 -2.6 radical SAM protein compare
HMPREF1058_RS16505 -2.1 -11.7 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS08855 -2.1 -6.2 arginine repressor compare
HMPREF1058_RS10255 -2.0 -4.1 hypothetical protein compare
HMPREF1058_RS16495 -2.0 -6.1 biotin/lipoyl-binding protein compare
HMPREF1058_RS09590 -2.0 -8.2 hypothetical protein compare
HMPREF1058_RS10920 -2.0 -3.6 viroplasmin family protein compare
HMPREF1058_RS04080 -1.9 -6.7 AAA family ATPase compare
HMPREF1058_RS10295 -1.9 -4.6 hypothetical protein compare
HMPREF1058_RS03980 -1.9 -2.3 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS06225 -1.9 -5.0 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS08845 -1.9 -11.4 argininosuccinate synthase compare
HMPREF1058_RS13965 -1.9 -3.5 hypothetical protein compare
HMPREF1058_RS06410 -1.9 -5.3 elongation factor 4 compare
HMPREF1058_RS07200 -1.9 -11.5 tryptophan synthase subunit alpha compare
HMPREF1058_RS09180 -1.8 -9.5 hypothetical protein compare
HMPREF1058_RS13655 -1.8 -13.0 cardiolipin synthase compare
HMPREF1058_RS02750 -1.8 -1.7 BamA/TamA family outer membrane protein compare
HMPREF1058_RS08850 -1.7 -9.1 N-acetyltransferase compare
HMPREF1058_RS08835 -1.7 -8.9 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS07960 -1.7 -15.0 response regulator compare
HMPREF1058_RS03755 -1.7 -11.1 DUF3078 domain-containing protein compare
HMPREF1058_RS14550 -1.7 -12.0 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS02975 -1.7 -6.4 hypothetical protein compare
HMPREF1058_RS09185 -1.6 -6.7 DUF4252 domain-containing protein compare
HMPREF1058_RS01650 -1.6 -7.6 hypothetical protein compare
HMPREF1058_RS15565 -1.6 -12.6 hypothetical protein compare
HMPREF1058_RS15375 -1.6 -3.0 DUF4369 domain-containing protein compare
HMPREF1058_RS07195 -1.6 -6.1 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS10290 -1.6 -3.8 hypothetical protein compare
HMPREF1058_RS14835 -1.6 -7.1 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS16490 -1.6 -9.4 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1058_RS14500 -1.6 -11.8 FprA family A-type flavoprotein compare
HMPREF1058_RS04025 -1.5 -9.2 hypothetical protein compare
HMPREF1058_RS06380 -1.5 -6.3 copper homeostasis protein CutC compare
HMPREF1058_RS00560 -1.5 -3.5 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS15965 -1.5 -5.9 recombinase RecA compare
HMPREF1058_RS12455 -1.5 -2.6 dUTP diphosphatase compare
HMPREF1058_RS07170 -1.5 -9.8 tryptophan synthase subunit beta compare
HMPREF1058_RS14565 -1.5 -11.3 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS04370 -1.5 -7.0 agmatine deiminase family protein compare
HMPREF1058_RS11930 -1.5 -4.3 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS09750 -1.5 -7.1 glycosyltransferase compare
HMPREF1058_RS02100 -1.4 -10.2 efflux RND transporter permease subunit compare
HMPREF1058_RS10275 -1.4 -9.2 RNA-splicing ligase RtcB compare
HMPREF1058_RS15920 -1.4 -3.0 hypothetical protein compare
HMPREF1058_RS07215 -1.4 -9.8 two-component sensor histidine kinase compare
HMPREF1058_RS13350 -1.4 -9.6 Trk system potassium transporter TrkA compare
HMPREF1058_RS18205 -1.4 -5.6 ferrous iron transport protein B compare
HMPREF1058_RS07210 -1.4 -8.3 response regulator transcription factor compare
HMPREF1058_RS14130 -1.4 -5.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HMPREF1058_RS09680 -1.4 -4.7 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS14075 -1.4 -3.4 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS02170 -1.4 -8.0 hypothetical protein compare
HMPREF1058_RS00590 -1.4 -6.2 hypothetical protein compare
HMPREF1058_RS02095 -1.4 -7.3 efflux transporter outer membrane subunit compare
HMPREF1058_RS18695 -1.3 -2.9 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS15750 -1.3 -8.9 glucosaminidase domain-containing protein compare
HMPREF1058_RS17635 -1.3 -6.1 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase compare
HMPREF1058_RS08645 -1.3 -5.2 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS07670 -1.3 -4.0 HAMP domain-containing histidine kinase compare
HMPREF1058_RS13635 -1.3 -4.4 gliding motility lipoprotein GldH compare
HMPREF1058_RS14745 -1.3 -8.9 ABC transporter substrate-binding protein compare
HMPREF1058_RS09925 -1.3 -4.6 conjugal transfer protein TraO compare
HMPREF1058_RS01270 -1.3 -7.0 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1058_RS06880 -1.3 -8.3 amidophosphoribosyltransferase compare
HMPREF1058_RS12460 -1.3 -9.1 tetratricopeptide repeat protein compare
HMPREF1058_RS11535 -1.3 -6.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS12795 -1.3 -6.3 CYTH domain-containing protein compare
HMPREF1058_RS01665 -1.2 -3.8 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS17950 -1.2 -6.0 biotin synthase BioB compare
HMPREF1058_RS14755 -1.2 -10.0 hypothetical protein compare
HMPREF1058_RS11215 -1.2 -3.9 DUF4294 domain-containing protein compare
HMPREF1058_RS03305 -1.2 -7.1 UvrD-helicase domain-containing protein compare
HMPREF1058_RS15410 -1.2 -7.8 DUF4136 domain-containing protein compare
HMPREF1058_RS14830 -1.2 -2.0 RecQ family ATP-dependent DNA helicase compare
HMPREF1058_RS07185 -1.2 -7.9 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS09440 -1.2 -4.5 ribosome-associated translation inhibitor RaiA compare
HMPREF1058_RS14700 -1.2 -3.8 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS01655 -1.2 -5.5 DUF4296 domain-containing protein compare
HMPREF1058_RS09485 -1.2 -9.8 PDZ domain-containing protein compare
HMPREF1058_RS14740 -1.2 -7.4 iron ABC transporter permease compare
HMPREF1058_RS14225 -1.2 -6.3 polyprenyl synthetase family protein compare
HMPREF1058_RS18235 -1.1 -4.1 3'-5' exonuclease compare
HMPREF1058_RS01275 -1.1 -7.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HMPREF1058_RS12880 -1.1 -7.5 thiamine-phosphate kinase compare
HMPREF1058_RS13905 -1.1 -3.3 hypothetical protein compare
HMPREF1058_RS17965 -1.1 -2.1 DUF452 family protein compare
HMPREF1058_RS20295 -1.1 -1.8 hypothetical protein compare
HMPREF1058_RS15975 -1.1 -4.6 saccharopine dehydrogenase family protein compare
HMPREF1058_RS09685 -1.1 -7.9 tetratricopeptide repeat protein compare
HMPREF1058_RS08315 -1.1 -3.7 biopolymer transporter ExbD compare
HMPREF1058_RS00600 -1.1 -7.2 diaminopimelate dehydrogenase compare
HMPREF1058_RS00630 -1.1 -7.3 carbohydrate kinase compare
HMPREF1058_RS14490 -1.1 -8.6 S9 family peptidase compare
HMPREF1058_RS07245 -1.1 -3.4 Rne/Rng family ribonuclease compare
HMPREF1058_RS14680 -1.1 -7.1 homoserine O-succinyltransferase compare
HMPREF1058_RS16835 -1.0 -6.5 ketol-acid reductoisomerase compare
HMPREF1058_RS17775 -1.0 -4.4 hypothetical protein compare
HMPREF1058_RS10285 -1.0 -2.4 hypothetical protein compare
HMPREF1058_RS14545 -1.0 -7.5 2-isopropylmalate synthase compare
HMPREF1058_RS08770 -1.0 -4.0 cupin domain-containing protein compare
HMPREF1058_RS16440 -1.0 -5.0 endonuclease MutS2 compare
HMPREF1058_RS10855 -1.0 -7.7 glycosyltransferase family 2 protein compare
HMPREF1058_RS02875 -1.0 -2.6 cysteine synthase A compare
HMPREF1058_RS14555 -1.0 -2.9 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS15330 -1.0 -4.5 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS14495 -1.0 -5.2 TIGR01212 family radical SAM protein compare
HMPREF1058_RS17945 -1.0 -5.7 hypothetical protein compare
HMPREF1058_RS14760 -1.0 -8.6 TonB-dependent receptor compare
HMPREF1058_RS02105 -1.0 -5.0 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS03090 -1.0 -6.4 trigger factor compare
HMPREF1058_RS07175 -1.0 -6.9 anthranilate synthase component I family protein compare
HMPREF1058_RS17050 -1.0 -5.2 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS10985 -1.0 -4.0 RNA methyltransferase compare
HMPREF1058_RS08325 -1.0 -3.5 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS07040 -1.0 -7.7 tetratricopeptide repeat protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in mouse experiments

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono across organisms