Experiment set3S306 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day1

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS10230 +1.1 5.8 hypothetical protein compare
HMPREF1058_RS02260 +0.9 6.5 hypothetical protein compare
HMPREF1058_RS19120 +0.9 1.8 hypothetical protein compare
HMPREF1058_RS18770 +0.8 1.8 hypothetical protein compare
HMPREF1058_RS14590 +0.8 2.7 AraC family transcriptional regulator compare
HMPREF1058_RS18505 +0.8 1.6 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS06945 +0.7 1.7 tRNA-Thr compare
HMPREF1058_RS0119615 +0.7 1.1 hypothetical protein compare
HMPREF1058_RS04600 +0.7 1.9 hypothetical protein compare
HMPREF1058_RS17815 +0.7 4.4 MFS transporter compare
HMPREF1058_RS05415 +0.7 2.7 Hsp20/alpha crystallin family protein compare
HMPREF1058_RS15430 +0.7 5.5 aspartate-alanine antiporter compare
HMPREF1058_RS05615 +0.7 1.3 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS06460 +0.6 1.7 hypothetical protein compare
HMPREF1058_RS02255 +0.6 4.1 DUF3244 domain-containing protein compare
HMPREF1058_RS21310 +0.6 1.8 hypothetical protein compare
HMPREF1058_RS14020 +0.6 5.0 cardiolipin synthase compare
HMPREF1058_RS0119260 +0.6 1.3 hypothetical protein compare
HMPREF1058_RS05695 +0.6 1.6 helix-turn-helix domain-containing protein compare
HMPREF1058_RS21725 +0.6 2.4 hypothetical protein compare
HMPREF1058_RS00525 +0.6 2.3 DUF4290 domain-containing protein compare
HMPREF1058_RS15690 +0.6 3.9 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS15895 +0.6 2.9 transcriptional repressor compare
HMPREF1058_RS00515 +0.6 4.2 YicC family protein compare
HMPREF1058_RS02250 +0.6 5.0 hypothetical protein compare
HMPREF1058_RS19025 +0.5 1.5 hypothetical protein compare
HMPREF1058_RS01845 +0.5 1.9 site-specific integrase compare
HMPREF1058_RS16855 +0.5 0.8 LPS export ABC transporter periplasmic protein LptC compare
HMPREF1058_RS21440 +0.5 1.9 hypothetical protein compare
HMPREF1058_RS03690 +0.5 2.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS13200 +0.5 1.5 hypothetical protein compare
HMPREF1058_RS09905 +0.5 1.4 conjugative transposon protein TraK compare
HMPREF1058_RS17370 +0.5 2.8 UpxY family transcription antiterminator compare
HMPREF1058_RS06035 +0.5 2.8 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS02800 +0.5 3.5 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS0119640 +0.5 2.7 hypothetical protein compare
HMPREF1058_RS01235 +0.5 2.7 phosphoserine phosphatase SerB compare
HMPREF1058_RS0119995 +0.5 1.9 DUF3795 domain-containing protein compare
HMPREF1058_RS03505 +0.5 2.5 TIGR03905 family TSCPD domain-containing protein compare
HMPREF1058_RS15440 +0.5 3.6 tetratricopeptide repeat protein compare
HMPREF1058_RS02320 +0.4 2.1 hypothetical protein compare
HMPREF1058_RS03200 +0.4 2.3 V-type ATP synthase subunit K compare
HMPREF1058_RS21380 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS02245 +0.4 2.1 cytidylate kinase-like family protein compare
HMPREF1058_RS16515 +0.4 2.7 GNAT family N-acetyltransferase compare
HMPREF1058_RS13045 +0.4 1.9 hypothetical protein compare
HMPREF1058_RS02495 +0.4 3.2 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS14355 +0.4 2.9 GNAT family N-acetyltransferase compare
HMPREF1058_RS03485 +0.4 2.0 RloB domain-containing protein compare
HMPREF1058_RS17820 +0.4 2.8 energy-dependent translational throttle protein EttA compare
HMPREF1058_RS03935 +0.4 2.4 hypothetical protein compare
HMPREF1058_RS21355 +0.4 1.5 mobilization protein compare
HMPREF1058_RS02335 +0.4 1.3 hypothetical protein compare
HMPREF1058_RS03435 +0.4 1.4 DNA-binding protein compare
HMPREF1058_RS02000 +0.4 1.9 type II toxin-antitoxin system HicA family toxin compare
HMPREF1058_RS05490 +0.4 2.1 helix-turn-helix domain-containing protein compare
HMPREF1058_RS03480 +0.4 2.7 ATP-binding protein compare
HMPREF1058_RS03500 +0.4 2.1 DEAD/DEAH box helicase compare
HMPREF1058_RS03555 +0.4 1.5 glutathione peroxidase compare
HMPREF1058_RS14160 +0.4 1.3 hypothetical protein compare
HMPREF1058_RS05200 +0.4 2.3 MaoC family dehydratase compare
HMPREF1058_RS16675 +0.4 2.4 DUF1282 family protein compare
HMPREF1058_RS21575 +0.4 0.6 mobilization protein compare
HMPREF1058_RS18535 +0.4 1.3 nucleotidyltransferase domain-containing protein compare
HMPREF1058_RS17725 +0.4 3.0 hypothetical protein compare
HMPREF1058_RS03075 +0.4 2.3 DNA helicase RecQ compare
HMPREF1058_RS0119820 +0.4 1.2 hypothetical protein compare
HMPREF1058_RS16190 +0.4 2.1 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS08075 +0.4 2.2 hypothetical protein compare
HMPREF1058_RS10305 +0.4 1.6 hypothetical protein compare
HMPREF1058_RS15080 +0.4 3.0 glycoside hydrolase family 97 protein compare
HMPREF1058_RS13020 +0.4 1.5 hypothetical protein compare
HMPREF1058_RS20715 +0.4 2.8 hypothetical protein compare
HMPREF1058_RS01615 +0.4 0.7 tRNA-Lys compare
HMPREF1058_RS16715 +0.4 1.3 hypothetical protein compare
HMPREF1058_RS03295 +0.4 0.8 sulfur carrier protein ThiS compare
HMPREF1058_RS0119595 +0.4 2.7 hypothetical protein compare
HMPREF1058_RS18700 +0.4 1.7 class I SAM-dependent methyltransferase compare
HMPREF1058_RS14485 +0.4 2.3 lipoyl synthase compare
HMPREF1058_RS06375 +0.4 1.7 glutaminase A compare
HMPREF1058_RS07910 +0.4 2.0 response regulator transcription factor compare
HMPREF1058_RS01715 +0.4 1.7 LysO family transporter compare
HMPREF1058_RS18415 +0.4 1.4 VOC family protein compare
HMPREF1058_RS11990 +0.4 1.5 MarR family transcriptional regulator compare
HMPREF1058_RS17215 +0.4 2.9 DEAD/DEAH box helicase compare
HMPREF1058_RS04545 +0.3 1.6 hypothetical protein compare
HMPREF1058_RS15935 +0.3 2.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
HMPREF1058_RS05795 +0.3 1.5 DMT family protein compare
HMPREF1058_RS07920 +0.3 1.9 DUF108 domain-containing protein compare
HMPREF1058_RS02485 +0.3 2.2 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS10120 +0.3 1.8 hypothetical protein compare
HMPREF1058_RS01115 +0.3 1.8 hypothetical protein compare
HMPREF1058_RS11290 +0.3 2.4 PspC domain-containing protein compare
HMPREF1058_RS03250 +0.3 2.0 hypothetical protein compare
HMPREF1058_RS17435 +0.3 1.1 DUF3575 domain-containing protein compare
HMPREF1058_RS12995 +0.3 1.2 hypothetical protein compare
HMPREF1058_RS06265 +0.3 2.4 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS14315 +0.3 1.8 thioesterase family protein compare
HMPREF1058_RS01370 +0.3 2.2 hypothetical protein compare
HMPREF1058_RS03630 +0.3 1.7 WecB/TagA/CpsF family glycosyltransferase compare
HMPREF1058_RS04270 +0.3 0.8 ferredoxin compare
HMPREF1058_RS21480 +0.3 0.8 hypothetical protein compare
HMPREF1058_RS06855 +0.3 1.7 Hsp20/alpha crystallin family protein compare
HMPREF1058_RS21645 +0.3 1.5 hypothetical protein compare
HMPREF1058_RS06420 +0.3 1.2 type II toxin-antitoxin system HicA family toxin compare
HMPREF1058_RS19000 +0.3 1.4 type II toxin-antitoxin system RelE/ParE family toxin compare
HMPREF1058_RS04195 +0.3 1.2 chloramphenicol acetyltransferase compare
HMPREF1058_RS04530 +0.3 0.5 hypothetical protein compare
HMPREF1058_RS00690 +0.3 2.1 DUF3332 domain-containing protein compare
HMPREF1058_RS09825 +0.3 1.8 RteC domain-containing protein compare
HMPREF1058_RS07515 +0.3 0.9 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS03460 +0.3 1.4 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
HMPREF1058_RS04235 +0.3 1.5 NUDIX hydrolase compare
HMPREF1058_RS17190 +0.3 1.8 hypothetical protein compare
HMPREF1058_RS11195 +0.3 2.2 DUF4884 domain-containing protein compare
HMPREF1058_RS01915 +0.3 1.2 hypothetical protein compare
HMPREF1058_RS11690 +0.3 2.4 acyl-CoA thioesterase compare
HMPREF1058_RS07845 +0.3 1.7 S26 family signal peptidase compare
HMPREF1058_RS19205 +0.3 1.8 hypothetical protein compare
HMPREF1058_RS0120000 +0.3 1.1 hypothetical protein compare
HMPREF1058_RS03725 +0.3 2.5 pyruvate, phosphate dikinase compare
HMPREF1058_RS03170 +0.3 1.7 hypothetical protein compare
HMPREF1058_RS01065 +0.3 1.4 hypothetical protein compare
HMPREF1058_RS21140 +0.3 1.3 ISAs1 family transposase compare
HMPREF1058_RS01125 +0.3 1.7 Rpn family recombination-promoting nuclease/putative transposase compare
HMPREF1058_RS04940 +0.3 1.0 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS07370 +0.3 2.5 N-acetylglucosamine-6-phosphate deacetylase compare
HMPREF1058_RS18995 +0.3 1.7 hypothetical protein compare
HMPREF1058_RS04385 +0.3 1.4 methylated-DNA--[protein]-cysteine S-methyltransferase compare
HMPREF1058_RS02910 +0.3 2.7 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS16955 +0.3 1.6 cold shock domain-containing protein compare
HMPREF1058_RS15995 +0.3 1.9 helix-turn-helix domain-containing protein compare
HMPREF1058_RS03490 +0.3 1.5 glycosyltransferase family 4 protein compare
HMPREF1058_RS11165 +0.3 2.4 glycoside hydrolase family 127 protein compare
HMPREF1058_RS0120025 +0.3 2.1 DUF975 family protein compare
HMPREF1058_RS18100 +0.3 1.8 (Fe-S)-binding protein compare
HMPREF1058_RS06725 +0.3 2.0 glycosyl transferase compare
HMPREF1058_RS14065 +0.3 2.2 lytic transglycosylase domain-containing protein compare
HMPREF1058_RS01625 +0.3 0.9 hypothetical protein compare
HMPREF1058_RS03710 +0.3 2.1 hypothetical protein compare
HMPREF1058_RS16565 +0.3 1.3 TlpA family protein disulfide reductase compare
HMPREF1058_RS00430 +0.3 1.7 DUF4488 domain-containing protein compare
HMPREF1058_RS05125 +0.3 1.5 hypothetical protein compare
HMPREF1058_RS16525 +0.3 1.5 hypothetical protein compare
HMPREF1058_RS02305 +0.3 2.0 hypothetical protein compare
HMPREF1058_RS16405 +0.3 2.0 PepSY-like domain-containing protein compare
HMPREF1058_RS07130 +0.3 1.8 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS21070 +0.3 1.2 potassium-transporting ATPase subunit F compare
HMPREF1058_RS12975 +0.3 2.3 hypothetical protein compare
HMPREF1058_RS00355 +0.3 1.7 hypothetical protein compare
HMPREF1058_RS01630 +0.3 2.1 hypothetical protein compare
HMPREF1058_RS09160 +0.3 2.1 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase compare
HMPREF1058_RS04700 +0.3 1.4 RNA-binding S4 domain-containing protein compare
HMPREF1058_RS0120135 +0.3 1.3 hypothetical protein compare
HMPREF1058_RS04460 +0.3 1.7 PepSY-like domain-containing protein compare
HMPREF1058_RS05825 +0.3 1.9 thiamine diphosphokinase compare
HMPREF1058_RS05215 +0.3 1.9 GtrA family protein compare
HMPREF1058_RS16830 +0.3 1.8 acyl-ACP thioesterase compare
HMPREF1058_RS05015 +0.3 1.3 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1058_RS11815 +0.3 2.2 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS0119510 +0.3 1.3 hypothetical protein compare
HMPREF1058_RS03685 +0.3 2.1 Fic family protein compare
HMPREF1058_RS03210 +0.3 2.5 alpha-glucan family phosphorylase compare
HMPREF1058_RS03275 +0.3 0.9 hypothetical protein compare
HMPREF1058_RS11190 +0.3 1.8 rubrerythrin family protein compare
HMPREF1058_RS02530 +0.3 1.6 GxxExxY protein compare
HMPREF1058_RS12130 +0.3 1.7 DUF2807 domain-containing protein compare
HMPREF1058_RS11240 +0.3 1.6 GNAT family N-acetyltransferase compare
HMPREF1058_RS15865 +0.3 1.2 PaaI family thioesterase compare
HMPREF1058_RS10070 +0.3 1.9 uracil phosphoribosyltransferase compare
HMPREF1058_RS09370 +0.3 1.4 DUF3467 domain-containing protein compare
HMPREF1058_RS01085 +0.3 1.8 DUF134 domain-containing protein compare
HMPREF1058_RS01250 +0.3 2.0 DUF4738 domain-containing protein compare
HMPREF1058_RS02465 +0.3 2.1 hypothetical protein compare
HMPREF1058_RS18105 +0.3 2.2 lactate utilization protein compare
HMPREF1058_RS16520 +0.3 1.4 nitroreductase family protein compare
HMPREF1058_RS16350 +0.3 0.5 transposase compare
HMPREF1058_RS13090 +0.3 1.2 UpxY family transcription antiterminator compare
HMPREF1058_RS11640 +0.3 1.8 hypothetical protein compare
HMPREF1058_RS18055 +0.3 1.8 TolC family protein compare
HMPREF1058_RS03400 +0.3 1.6 long-chain fatty acid--CoA ligase compare
HMPREF1058_RS13060 +0.3 1.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS09895 +0.3 1.3 DUF4141 domain-containing protein compare
HMPREF1058_RS16695 +0.3 1.8 phosphotransferase compare
HMPREF1058_RS05185 +0.3 1.5 hypothetical protein compare
HMPREF1058_RS14095 +0.3 1.6 NigD-like N-terminal domain-containing protein compare
HMPREF1058_RS21630 +0.3 1.3 hypothetical protein compare
HMPREF1058_RS04520 +0.3 0.5 hypothetical protein compare
HMPREF1058_RS12690 +0.2 0.8 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS16015 +0.2 1.2 helix-turn-helix domain-containing protein compare
HMPREF1058_RS18365 +0.2 1.4 methylcobamide--CoM methyltransferase compare
HMPREF1058_RS04445 +0.2 0.7 porin family protein compare
HMPREF1058_RS15340 +0.2 2.0 OmpA family protein compare
HMPREF1058_RS15025 +0.2 1.7 FecR family protein compare
HMPREF1058_RS05130 +0.2 1.2 site-specific integrase compare
HMPREF1058_RS15100 +0.2 1.8 hypothetical protein compare
HMPREF1058_RS19180 +0.2 1.3 hypothetical protein compare
HMPREF1058_RS11485 +0.2 1.5 ketopantoate reductase family protein compare
HMPREF1058_RS18110 +0.2 1.6 LUD domain-containing protein compare
HMPREF1058_RS05190 +0.2 1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in mouse experiments

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono across organisms