Experiment set3S305 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day1

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS10230 +1.3 6.0 hypothetical protein compare
HMPREF1058_RS02260 +0.9 6.8 hypothetical protein compare
HMPREF1058_RS04530 +0.9 2.0 hypothetical protein compare
HMPREF1058_RS17815 +0.8 5.0 MFS transporter compare
HMPREF1058_RS14590 +0.8 2.3 AraC family transcriptional regulator compare
HMPREF1058_RS14020 +0.8 6.0 cardiolipin synthase compare
HMPREF1058_RS04600 +0.8 2.3 hypothetical protein compare
HMPREF1058_RS04545 +0.7 3.3 hypothetical protein compare
HMPREF1058_RS18505 +0.7 1.4 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS09890 +0.7 1.0 DUF3876 domain-containing protein compare
HMPREF1058_RS02255 +0.6 3.9 DUF3244 domain-containing protein compare
HMPREF1058_RS06945 +0.6 1.4 tRNA-Thr compare
HMPREF1058_RS21310 +0.6 3.0 hypothetical protein compare
HMPREF1058_RS02065 +0.6 1.3 hypothetical protein compare
HMPREF1058_RS00515 +0.6 4.0 YicC family protein compare
HMPREF1058_RS02800 +0.6 4.0 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS15430 +0.6 4.7 aspartate-alanine antiporter compare
HMPREF1058_RS05200 +0.6 3.4 MaoC family dehydratase compare
HMPREF1058_RS01625 +0.6 2.1 hypothetical protein compare
HMPREF1058_RS16515 +0.6 3.7 GNAT family N-acetyltransferase compare
HMPREF1058_RS03200 +0.6 2.4 V-type ATP synthase subunit K compare
HMPREF1058_RS05570 +0.6 1.7 helix-turn-helix domain-containing protein compare
HMPREF1058_RS02320 +0.6 2.2 hypothetical protein compare
HMPREF1058_RS0119615 +0.5 1.4 hypothetical protein compare
HMPREF1058_RS07840 +0.5 1.6 hypothetical protein compare
HMPREF1058_RS13045 +0.5 1.9 hypothetical protein compare
HMPREF1058_RS0119380 +0.5 1.8 IS66 family insertion sequence element accessory protein TnpB compare
HMPREF1058_RS04270 +0.5 1.1 ferredoxin compare
HMPREF1058_RS06420 +0.5 1.6 type II toxin-antitoxin system HicA family toxin compare
HMPREF1058_RS15080 +0.5 3.9 glycoside hydrolase family 97 protein compare
HMPREF1058_RS11375 +0.5 0.7 TIGR00730 family Rossman fold protein compare
HMPREF1058_RS02000 +0.5 2.1 type II toxin-antitoxin system HicA family toxin compare
HMPREF1058_RS05825 +0.5 3.6 thiamine diphosphokinase compare
HMPREF1058_RS15895 +0.5 2.0 transcriptional repressor compare
HMPREF1058_RS01370 +0.5 2.8 hypothetical protein compare
HMPREF1058_RS18570 +0.5 1.9 GNAT family N-acetyltransferase compare
HMPREF1058_RS06375 +0.5 2.0 glutaminase A compare
HMPREF1058_RS09905 +0.5 1.6 conjugative transposon protein TraK compare
HMPREF1058_RS01855 +0.5 1.9 hypothetical protein compare
HMPREF1058_RS20485 +0.5 1.1 mobilization protein compare
HMPREF1058_RS03275 +0.5 1.6 hypothetical protein compare
HMPREF1058_RS03170 +0.5 2.7 hypothetical protein compare
HMPREF1058_RS17395 +0.4 1.4 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS06460 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS16830 +0.4 2.9 acyl-ACP thioesterase compare
HMPREF1058_RS02250 +0.4 4.0 hypothetical protein compare
HMPREF1058_RS04940 +0.4 1.4 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS16675 +0.4 2.9 DUF1282 family protein compare
HMPREF1058_RS15690 +0.4 3.4 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS15440 +0.4 3.4 tetratricopeptide repeat protein compare
HMPREF1058_RS15090 +0.4 3.2 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS10120 +0.4 1.9 hypothetical protein compare
HMPREF1058_RS01920 +0.4 2.0 hypothetical protein compare
HMPREF1058_RS05015 +0.4 1.4 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1058_RS21645 +0.4 1.6 hypothetical protein compare
HMPREF1058_RS10805 +0.4 2.9 FecR family protein compare
HMPREF1058_RS16190 +0.4 1.5 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS18565 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS13200 +0.4 1.5 hypothetical protein compare
HMPREF1058_RS03580 +0.4 1.1 UpxY family transcription antiterminator compare
HMPREF1058_RS03505 +0.4 2.0 TIGR03905 family TSCPD domain-containing protein compare
HMPREF1058_RS08000 +0.4 1.4 hypothetical protein compare
HMPREF1058_RS05130 +0.4 2.2 site-specific integrase compare
HMPREF1058_RS04385 +0.4 1.6 methylated-DNA--[protein]-cysteine S-methyltransferase compare
HMPREF1058_RS05695 +0.4 1.5 helix-turn-helix domain-containing protein compare
HMPREF1058_RS02495 +0.4 2.6 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS01360 +0.4 2.7 DUF3871 family protein compare
HMPREF1058_RS04235 +0.4 1.8 NUDIX hydrolase compare
HMPREF1058_RS01845 +0.4 1.2 site-specific integrase compare
HMPREF1058_RS05185 +0.4 2.2 hypothetical protein compare
HMPREF1058_RS20935 +0.4 2.2 helix-turn-helix domain-containing protein compare
HMPREF1058_RS00525 +0.4 1.4 DUF4290 domain-containing protein compare
HMPREF1058_RS01955 +0.4 2.2 hypothetical protein compare
HMPREF1058_RS15100 +0.4 2.4 hypothetical protein compare
HMPREF1058_RS09970 +0.4 0.9 hypothetical protein compare
HMPREF1058_RS11165 +0.4 3.0 glycoside hydrolase family 127 protein compare
HMPREF1058_RS17600 +0.4 1.3 hypothetical protein compare
HMPREF1058_RS14355 +0.4 2.1 GNAT family N-acetyltransferase compare
HMPREF1058_RS21545 +0.4 1.4 hypothetical protein compare
HMPREF1058_RS17370 +0.4 1.6 UpxY family transcription antiterminator compare
HMPREF1058_RS10010 +0.4 1.2 hypothetical protein compare
HMPREF1058_RS06725 +0.4 2.8 glycosyl transferase compare
HMPREF1058_RS01235 +0.4 2.2 phosphoserine phosphatase SerB compare
HMPREF1058_RS11880 +0.4 3.4 hypothetical protein compare
HMPREF1058_RS10135 +0.4 2.5 hypothetical protein compare
HMPREF1058_RS05020 +0.4 2.1 twin-arginine translocase subunit TatC compare
HMPREF1058_RS17820 +0.4 2.3 energy-dependent translational throttle protein EttA compare
HMPREF1058_RS04665 +0.4 2.6 NigD-like N-terminal domain-containing protein compare
HMPREF1058_RS03475 +0.4 1.3 radical SAM protein compare
HMPREF1058_RS03450 +0.4 1.3 hypothetical protein compare
HMPREF1058_RS01915 +0.4 2.1 hypothetical protein compare
HMPREF1058_RS11825 +0.4 1.9 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS04670 +0.3 2.1 fluoride efflux transporter CrcB compare
HMPREF1058_RS20490 +0.3 1.1 RNA polymerase subunit sigma-70 compare
HMPREF1058_RS16015 +0.3 1.8 helix-turn-helix domain-containing protein compare
HMPREF1058_RS14065 +0.3 2.7 lytic transglycosylase domain-containing protein compare
HMPREF1058_RS08100 +0.3 1.6 BlaI/MecI/CopY family transcriptional regulator compare
HMPREF1058_RS16855 +0.3 0.5 LPS export ABC transporter periplasmic protein LptC compare
HMPREF1058_RS04190 +0.3 1.6 HAD family hydrolase compare
HMPREF1058_RS03470 +0.3 1.9 glycosyltransferase compare
HMPREF1058_RS16955 +0.3 2.0 cold shock domain-containing protein compare
HMPREF1058_RS04115 +0.3 0.7 CinA family protein compare
HMPREF1058_RS14730 +0.3 2.6 threonine synthase compare
HMPREF1058_RS07910 +0.3 1.5 response regulator transcription factor compare
HMPREF1058_RS14160 +0.3 0.8 hypothetical protein compare
HMPREF1058_RS03235 +0.3 2.7 ABC transporter substrate-binding protein compare
HMPREF1058_RS15025 +0.3 2.4 FecR family protein compare
HMPREF1058_RS02305 +0.3 1.9 hypothetical protein compare
HMPREF1058_RS03710 +0.3 2.1 hypothetical protein compare
HMPREF1058_RS04575 +0.3 0.8 hypothetical protein compare
HMPREF1058_RS05820 +0.3 1.7 nicotinamide mononucleotide transporter compare
HMPREF1058_RS21475 +0.3 0.6 smalltalk protein compare
HMPREF1058_RS05450 +0.3 2.1 flavodoxin compare
HMPREF1058_RS06355 +0.3 2.2 threonine ammonia-lyase compare
HMPREF1058_RS15460 +0.3 1.9 amidohydrolase compare
HMPREF1058_RS03195 +0.3 2.0 V-type ATP synthase subunit I compare
HMPREF1058_RS06035 +0.3 1.3 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS06855 +0.3 2.2 Hsp20/alpha crystallin family protein compare
HMPREF1058_RS15230 +0.3 1.4 DUF4348 domain-containing protein compare
HMPREF1058_RS06265 +0.3 2.2 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS06210 +0.3 1.3 antibiotic biosynthesis monooxygenase compare
HMPREF1058_RS21355 +0.3 1.3 mobilization protein compare
HMPREF1058_RS11025 +0.3 1.9 zinc ABC transporter substrate-binding protein compare
HMPREF1058_RS06070 +0.3 0.6 ferritin compare
HMPREF1058_RS04700 +0.3 1.5 RNA-binding S4 domain-containing protein compare
HMPREF1058_RS01530 +0.3 1.2 NAD(P)H-dependent oxidoreductase compare
HMPREF1058_RS05590 +0.3 1.7 helix-turn-helix domain-containing protein compare
HMPREF1058_RS01520 +0.3 1.9 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS04030 +0.3 2.4 universal stress protein compare
HMPREF1058_RS01375 +0.3 2.1 site-specific integrase compare
HMPREF1058_RS18710 +0.3 1.8 VWA domain-containing protein compare
HMPREF1058_RS09900 +0.3 1.5 conjugative transposon protein TraJ compare
HMPREF1058_RS21140 +0.3 1.1 ISAs1 family transposase compare
HMPREF1058_RS17215 +0.3 2.3 DEAD/DEAH box helicase compare
HMPREF1058_RS03180 +0.3 2.2 V-type ATP synthase subunit A compare
HMPREF1058_RS05460 +0.3 1.6 aldo/keto reductase compare
HMPREF1058_RS10305 +0.3 1.3 hypothetical protein compare
HMPREF1058_RS04205 +0.3 1.9 bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase compare
HMPREF1058_RS03690 +0.3 1.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS05725 +0.3 1.0 hypothetical protein compare
HMPREF1058_RS06700 +0.3 2.0 glycosyltransferase family 2 protein compare
HMPREF1058_RS03430 +0.3 0.6 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS05615 +0.3 0.5 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS15280 +0.3 1.0 tRNA-Ser compare
HMPREF1058_RS03485 +0.3 1.2 RloB domain-containing protein compare
HMPREF1058_RS12570 +0.3 1.9 HIT family protein compare
HMPREF1058_RS0120025 +0.3 2.0 DUF975 family protein compare
HMPREF1058_RS15240 +0.3 1.6 MBL fold metallo-hydrolase compare
HMPREF1058_RS18105 +0.3 2.3 lactate utilization protein compare
HMPREF1058_RS17725 +0.3 2.0 hypothetical protein compare
HMPREF1058_RS18770 +0.3 0.6 hypothetical protein compare
HMPREF1058_RS03500 +0.3 1.3 DEAD/DEAH box helicase compare
HMPREF1058_RS18610 +0.3 1.3 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS04805 +0.3 1.2 hypothetical protein compare
HMPREF1058_RS03330 +0.3 2.0 glutamine synthetase compare
HMPREF1058_RS12640 +0.3 1.2 hypothetical protein compare
HMPREF1058_RS07920 +0.3 1.7 DUF108 domain-containing protein compare
HMPREF1058_RS01645 +0.3 1.2 RNA methyltransferase compare
HMPREF1058_RS03190 +0.3 1.4 V-type ATP synthase subunit D compare
HMPREF1058_RS01715 +0.3 1.5 LysO family transporter compare
HMPREF1058_RS0119260 +0.3 0.4 hypothetical protein compare
HMPREF1058_RS18110 +0.3 1.6 LUD domain-containing protein compare
HMPREF1058_RS13020 +0.3 1.5 hypothetical protein compare
HMPREF1058_RS04525 +0.3 1.2 hypothetical protein compare
HMPREF1058_RS19000 +0.3 1.4 type II toxin-antitoxin system RelE/ParE family toxin compare
HMPREF1058_RS07130 +0.3 1.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS02130 +0.3 2.0 hypothetical protein compare
HMPREF1058_RS02910 +0.3 2.3 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS09825 +0.3 1.5 RteC domain-containing protein compare
HMPREF1058_RS16525 +0.3 0.9 hypothetical protein compare
HMPREF1058_RS21575 +0.3 0.5 mobilization protein compare
HMPREF1058_RS12660 +0.3 2.0 GNAT family N-acetyltransferase compare
HMPREF1058_RS13035 +0.3 2.2 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS05585 +0.3 2.0 site-specific integrase compare
HMPREF1058_RS07720 +0.2 1.8 sigma-70 family RNA polymerase sigma factor compare
HMPREF1058_RS21070 +0.2 1.1 potassium-transporting ATPase subunit F compare
HMPREF1058_RS14145 +0.2 1.6 nucleoside deaminase compare
HMPREF1058_RS15560 +0.2 1.6 DsbA family protein compare
HMPREF1058_RS18080 +0.2 1.6 response regulator transcription factor compare
HMPREF1058_RS17565 +0.2 0.7 tyrosine-type recombinase/integrase compare
HMPREF1058_RS21380 +0.2 0.7 hypothetical protein compare
HMPREF1058_RS01155 +0.2 1.6 TolC family protein compare
HMPREF1058_RS0119595 +0.2 1.1 hypothetical protein compare
HMPREF1058_RS17670 +0.2 1.5 hypothetical protein compare
HMPREF1058_RS10070 +0.2 1.9 uracil phosphoribosyltransferase compare
HMPREF1058_RS03295 +0.2 0.6 sulfur carrier protein ThiS compare
HMPREF1058_RS03490 +0.2 1.2 glycosyltransferase family 4 protein compare
HMPREF1058_RS05690 +0.2 1.0 hypothetical protein compare
HMPREF1058_RS04515 +0.2 0.7 hypothetical protein compare
HMPREF1058_RS04220 +0.2 1.3 class I SAM-dependent methyltransferase compare
HMPREF1058_RS15340 +0.2 1.9 OmpA family protein compare
HMPREF1058_RS01500 +0.2 0.7 hypothetical protein compare
HMPREF1058_RS03640 +0.2 1.8 acyltransferase compare
HMPREF1058_RS05215 +0.2 1.7 GtrA family protein compare
HMPREF1058_RS10615 +0.2 1.0 acyl carrier protein compare
HMPREF1058_RS08685 +0.2 1.4 hypothetical protein compare
HMPREF1058_RS11055 +0.2 1.7 5-dehydro-4-deoxy-D-glucuronate isomerase compare
HMPREF1058_RS08155 +0.2 2.0 glycosyl hydrolase family 30 compare
HMPREF1058_RS05415 +0.2 0.6 Hsp20/alpha crystallin family protein compare
HMPREF1058_RS17035 +0.2 1.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in mouse experiments

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono across organisms