Experiment set3S304 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day1

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS12490 -7.5 -6.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS14610 -7.5 -8.9 adenylosuccinate synthase compare
HMPREF1058_RS15075 -6.8 -10.4 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS16760 -6.3 -4.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS09675 -6.3 -8.2 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS06875 -6.1 -10.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HMPREF1058_RS06195 -6.0 -5.9 diaminopimelate decarboxylase compare
HMPREF1058_RS07955 -6.0 -19.6 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS06870 -5.9 -16.3 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS11730 -5.7 -3.9 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS10995 -5.5 -13.6 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS08025 -5.4 -11.0 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS14785 -5.4 -10.9 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS11310 -4.8 -7.3 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS06310 -4.8 -4.7 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS07655 -4.7 -2.6 hypothetical protein compare
HMPREF1058_RS02880 -4.7 -17.8 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS14770 -4.7 -13.4 prephenate dehydrogenase compare
HMPREF1058_RS06190 -4.5 -5.4 aspartate kinase compare
HMPREF1058_RS08535 -4.5 -3.1 elongation factor P compare
HMPREF1058_RS16730 -4.4 -4.3 chorismate synthase compare
HMPREF1058_RS14035 -4.3 -2.9 hypothetical protein compare
HMPREF1058_RS10840 -4.2 -4.7 hypothetical protein compare
HMPREF1058_RS13970 -4.2 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS09445 -4.2 -2.8 tyrosine-type recombinase/integrase compare
HMPREF1058_RS14005 -4.2 -5.7 3-dehydroquinate synthase compare
HMPREF1058_RS03510 -3.9 -7.3 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS16750 -3.9 -2.7 shikimate dehydrogenase compare
HMPREF1058_RS15395 -3.8 -2.6 dihydroorotase compare
HMPREF1058_RS11490 -3.8 -7.4 redox-regulated ATPase YchF compare
HMPREF1058_RS16625 -3.6 -8.9 hypothetical protein compare
HMPREF1058_RS03970 -3.5 -2.4 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS04080 -3.5 -7.9 AAA family ATPase compare
HMPREF1058_RS06600 -3.4 -7.4 DedA family protein compare
HMPREF1058_RS11040 -3.4 -13.4 polysaccharide deacetylase family protein compare
HMPREF1058_RS12105 -3.3 -3.6 shikimate kinase compare
HMPREF1058_RS02885 -3.2 -16.6 response regulator transcription factor compare
HMPREF1058_RS16620 -3.2 -15.0 GGGtGRT protein compare
HMPREF1058_RS13350 -3.1 -14.3 Trk system potassium transporter TrkA compare
HMPREF1058_RS16845 -3.1 -9.7 SurA N-terminal domain-containing protein compare
HMPREF1058_RS01800 -3.1 -4.9 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS11890 -3.0 -5.5 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS09590 -3.0 -9.7 hypothetical protein compare
HMPREF1058_RS03085 -2.9 -3.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS04070 -2.9 -8.0 hypothetical protein compare
HMPREF1058_RS17130 -2.8 -5.5 tetratricopeptide repeat protein compare
HMPREF1058_RS17080 -2.8 -1.9 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS14465 -2.8 -3.2 enoyl-ACP reductase compare
HMPREF1058_RS18265 -2.8 -5.1 aspartate 1-decarboxylase compare
HMPREF1058_RS13910 -2.8 -10.0 nucleoside deaminase compare
HMPREF1058_RS15920 -2.7 -3.5 hypothetical protein compare
HMPREF1058_RS08295 -2.7 -10.0 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS04050 -2.6 -8.7 protein BatD compare
HMPREF1058_RS00595 -2.6 -6.2 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS07960 -2.6 -20.9 response regulator compare
HMPREF1058_RS03535 -2.5 -2.9 UvrD-helicase domain-containing protein compare
HMPREF1058_RS01705 -2.5 -2.8 Na+/H+ antiporter NhaC family protein compare
HMPREF1058_RS16500 -2.5 -8.0 OadG family protein compare
HMPREF1058_RS06410 -2.5 -5.5 elongation factor 4 compare
HMPREF1058_RS06040 -2.5 -10.2 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS14220 -2.4 -6.6 energy transducer TonB compare
HMPREF1058_RS04075 -2.4 -5.4 DUF58 domain-containing protein compare
HMPREF1058_RS06225 -2.3 -5.1 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS02405 -2.3 -18.3 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS06880 -2.3 -10.2 amidophosphoribosyltransferase compare
HMPREF1058_RS04370 -2.3 -8.7 agmatine deiminase family protein compare
HMPREF1058_RS15375 -2.3 -3.5 DUF4369 domain-containing protein compare
HMPREF1058_RS14790 -2.3 -9.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS12505 -2.3 -2.2 RNA polymerase factor sigma-54 compare
HMPREF1058_RS09440 -2.3 -5.9 ribosome-associated translation inhibitor RaiA compare
HMPREF1058_RS03530 -2.3 -2.1 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS10850 -2.3 -12.8 glycosyltransferase family 2 protein compare
HMPREF1058_RS11205 -2.3 -2.5 radical SAM protein compare
HMPREF1058_RS14225 -2.2 -9.4 polyprenyl synthetase family protein compare
HMPREF1058_RS16835 -2.2 -12.2 ketol-acid reductoisomerase compare
HMPREF1058_RS10255 -2.2 -4.2 hypothetical protein compare
HMPREF1058_RS04065 -2.2 -3.4 VWA domain-containing protein compare
HMPREF1058_RS16755 -2.1 -4.2 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS02410 -2.1 -17.7 methylmalonyl-CoA mutase compare
HMPREF1058_RS10835 -2.1 -9.8 UDP-galactopyranose mutase compare
HMPREF1058_RS06560 -2.1 -10.9 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS12880 -2.1 -11.6 thiamine-phosphate kinase compare
HMPREF1058_RS05140 -2.1 -6.4 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS13965 -2.1 -3.2 hypothetical protein compare
HMPREF1058_RS17155 -2.1 -4.9 dCMP deaminase family protein compare
HMPREF1058_RS16495 -2.0 -5.7 biotin/lipoyl-binding protein compare
HMPREF1058_RS01650 -2.0 -8.2 hypothetical protein compare
HMPREF1058_RS11535 -2.0 -10.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS14200 -2.0 -12.7 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS00625 -1.9 -10.7 MFS transporter compare
HMPREF1058_RS10270 -1.9 -6.3 hypothetical protein compare
HMPREF1058_RS15390 -1.9 -4.7 5-methyltetrahydrofolate--homocysteine methyltransferase compare
HMPREF1058_RS16505 -1.9 -11.4 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS03000 -1.9 -9.5 IMP dehydrogenase compare
HMPREF1058_RS03770 -1.9 -9.8 RNA polymerase sigma factor compare
HMPREF1058_RS09180 -1.9 -7.9 hypothetical protein compare
HMPREF1058_RS14795 -1.9 -5.6 prephenate dehydratase compare
HMPREF1058_RS03800 -1.9 -10.9 serine hydroxymethyltransferase compare
HMPREF1058_RS02975 -1.9 -5.4 hypothetical protein compare
HMPREF1058_RS16510 -1.9 -4.1 methylmalonyl-CoA epimerase compare
HMPREF1058_RS07635 -1.8 -4.3 50S ribosomal protein L9 compare
HMPREF1058_RS12525 -1.8 -5.1 Na/Pi cotransporter family protein compare
HMPREF1058_RS17950 -1.8 -8.4 biotin synthase BioB compare
HMPREF1058_RS13655 -1.8 -12.7 cardiolipin synthase compare
HMPREF1058_RS14130 -1.8 -6.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HMPREF1058_RS16815 -1.8 -11.1 dihydroxy-acid dehydratase compare
HMPREF1058_RS18205 -1.7 -6.1 ferrous iron transport protein B compare
HMPREF1058_RS06380 -1.7 -7.8 copper homeostasis protein CutC compare
HMPREF1058_RS10920 -1.7 -3.3 viroplasmin family protein compare
HMPREF1058_RS16805 -1.7 -6.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
HMPREF1058_RS01665 -1.7 -3.8 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS16820 -1.7 -11.9 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS17885 -1.6 -12.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS03755 -1.6 -10.5 DUF3078 domain-containing protein compare
HMPREF1058_RS01695 -1.6 -7.2 LacI family DNA-binding transcriptional regulator compare
HMPREF1058_RS06915 -1.6 -7.5 diaminopimelate epimerase compare
HMPREF1058_RS02750 -1.6 -1.8 BamA/TamA family outer membrane protein compare
HMPREF1058_RS09610 -1.6 -8.7 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS10290 -1.6 -3.5 hypothetical protein compare
HMPREF1058_RS00560 -1.6 -3.1 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS16685 -1.5 -12.1 methionine synthase compare
HMPREF1058_RS05755 -1.5 -8.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
HMPREF1058_RS09750 -1.5 -7.0 glycosyltransferase compare
HMPREF1058_RS11910 -1.5 -8.8 DEAD/DEAH box helicase compare
HMPREF1058_RS14270 -1.5 -9.2 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS07615 -1.5 -7.4 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB compare
HMPREF1058_RS03305 -1.5 -9.4 UvrD-helicase domain-containing protein compare
HMPREF1058_RS03980 -1.5 -2.0 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS15665 -1.5 -6.7 MFS transporter compare
HMPREF1058_RS09185 -1.5 -5.3 DUF4252 domain-containing protein compare
HMPREF1058_RS14075 -1.5 -4.3 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS15965 -1.5 -5.5 recombinase RecA compare
HMPREF1058_RS07245 -1.5 -3.7 Rne/Rng family ribonuclease compare
HMPREF1058_RS14550 -1.5 -9.6 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS18220 -1.5 -8.4 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
HMPREF1058_RS14835 -1.4 -5.7 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS11930 -1.4 -4.5 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS15410 -1.4 -7.7 DUF4136 domain-containing protein compare
HMPREF1058_RS14565 -1.4 -11.3 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS17945 -1.4 -6.0 hypothetical protein compare
HMPREF1058_RS09240 -1.4 -8.4 type I methionyl aminopeptidase compare
HMPREF1058_RS15750 -1.4 -8.5 glucosaminidase domain-containing protein compare
HMPREF1058_RS14745 -1.4 -7.5 ABC transporter substrate-binding protein compare
HMPREF1058_RS12200 -1.4 -5.2 CvpA family protein compare
HMPREF1058_RS14755 -1.4 -10.9 hypothetical protein compare
HMPREF1058_RS14915 -1.4 -6.6 N-acetyltransferase compare
HMPREF1058_RS14505 -1.3 -3.1 mechanosensitive ion channel compare
HMPREF1058_RS00630 -1.3 -7.8 carbohydrate kinase compare
HMPREF1058_RS06910 -1.3 -9.4 LL-diaminopimelate aminotransferase compare
HMPREF1058_RS15740 -1.3 -5.5 hypothetical protein compare
HMPREF1058_RS09585 -1.3 -10.1 argininosuccinate lyase compare
HMPREF1058_RS07040 -1.3 -8.5 tetratricopeptide repeat protein compare
HMPREF1058_RS12805 -1.3 -8.6 RNA polymerase sigma factor compare
HMPREF1058_RS14740 -1.3 -7.8 iron ABC transporter permease compare
HMPREF1058_RS15520 -1.3 -4.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS06885 -1.3 -5.5 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
HMPREF1058_RS01265 -1.3 -3.4 FHA domain-containing protein compare
HMPREF1058_RS14830 -1.3 -1.4 RecQ family ATP-dependent DNA helicase compare
HMPREF1058_RS06925 -1.3 -4.1 glutamate synthase subunit beta compare
HMPREF1058_RS14605 -1.3 -3.8 transcriptional repressor compare
HMPREF1058_RS09925 -1.3 -2.3 conjugal transfer protein TraO compare
HMPREF1058_RS07310 -1.3 -7.7 glucosamine-6-phosphate deaminase compare
HMPREF1058_RS18635 -1.3 -2.3 PepSY-like domain-containing protein compare
HMPREF1058_RS10825 -1.3 -7.7 glycosyltransferase family 9 protein compare
HMPREF1058_RS02170 -1.2 -7.6 hypothetical protein compare
HMPREF1058_RS10855 -1.2 -8.5 glycosyltransferase family 2 protein compare
HMPREF1058_RS15405 -1.2 -7.3 outer membrane beta-barrel protein compare
HMPREF1058_RS15330 -1.2 -3.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS03090 -1.2 -7.3 trigger factor compare
HMPREF1058_RS16775 -1.2 -6.3 tRNA pseudouridine(38-40) synthase TruA compare
HMPREF1058_RS16490 -1.2 -8.0 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1058_RS17170 -1.2 -8.3 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS02095 -1.2 -6.4 efflux transporter outer membrane subunit compare
HMPREF1058_RS01270 -1.2 -6.0 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1058_RS07440 -1.2 -5.4 aspartate--ammonia ligase compare
HMPREF1058_RS05925 -1.2 -2.2 DUF5024 domain-containing protein compare
HMPREF1058_RS10275 -1.2 -7.3 RNA-splicing ligase RtcB compare
HMPREF1058_RS04375 -1.2 -6.4 carbon-nitrogen hydrolase compare
HMPREF1058_RS01655 -1.2 -4.9 DUF4296 domain-containing protein compare
HMPREF1058_RS08320 -1.2 -3.8 MotA/TolQ/ExbB proton channel family protein compare
HMPREF1058_RS10985 -1.2 -4.8 RNA methyltransferase compare
HMPREF1058_RS10940 -1.2 -9.3 U32 family peptidase compare
HMPREF1058_RS09460 -1.2 -8.2 gamma carbonic anhydrase family protein compare
HMPREF1058_RS05615 -1.2 -1.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS14760 -1.2 -10.0 TonB-dependent receptor compare
HMPREF1058_RS10970 -1.1 -8.3 ribonuclease R compare
HMPREF1058_RS16260 -1.1 -4.4 hotdog fold thioesterase compare
HMPREF1058_RS18560 -1.1 -4.3 recombination protein RecR compare
HMPREF1058_RS18235 -1.1 -3.9 3'-5' exonuclease compare
HMPREF1058_RS17090 -1.1 -5.4 hypothetical protein compare
HMPREF1058_RS14500 -1.1 -8.8 FprA family A-type flavoprotein compare
HMPREF1058_RS02100 -1.1 -7.5 efflux RND transporter permease subunit compare
HMPREF1058_RS03765 -1.1 -6.3 trimeric intracellular cation channel family protein compare
HMPREF1058_RS13905 -1.1 -2.5 hypothetical protein compare
HMPREF1058_RS02875 -1.1 -2.2 cysteine synthase A compare
HMPREF1058_RS14555 -1.1 -1.6 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS16245 -1.1 -4.9 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
HMPREF1058_RS15320 -1.1 -3.4 hypothetical protein compare
HMPREF1058_RS05780 -1.1 -6.8 PD40 domain-containing protein compare
HMPREF1058_RS10055 -1.1 -8.4 translational GTPase TypA compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in mouse experiments

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono across organisms