Experiment set3S304 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day1

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS10230 +1.2 4.1 hypothetical protein compare
HMPREF1058_RS14590 +1.2 3.9 AraC family transcriptional regulator compare
HMPREF1058_RS17815 +1.1 7.6 MFS transporter compare
HMPREF1058_RS02260 +1.1 5.6 hypothetical protein compare
HMPREF1058_RS15430 +1.1 7.2 aspartate-alanine antiporter compare
HMPREF1058_RS00515 +1.1 7.7 YicC family protein compare
HMPREF1058_RS18505 +0.9 1.8 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS0119615 +0.9 1.3 hypothetical protein compare
HMPREF1058_RS17205 +0.9 3.4 DUF4199 domain-containing protein compare
HMPREF1058_RS09890 +0.9 1.3 DUF3876 domain-containing protein compare
HMPREF1058_RS19120 +0.8 1.8 hypothetical protein compare
HMPREF1058_RS15440 +0.8 5.9 tetratricopeptide repeat protein compare
HMPREF1058_RS15895 +0.8 3.6 transcriptional repressor compare
HMPREF1058_RS01115 +0.8 3.9 hypothetical protein compare
HMPREF1058_RS18770 +0.8 2.0 hypothetical protein compare
HMPREF1058_RS06460 +0.7 1.9 hypothetical protein compare
HMPREF1058_RS02255 +0.7 4.1 DUF3244 domain-containing protein compare
HMPREF1058_RS09905 +0.7 2.5 conjugative transposon protein TraK compare
HMPREF1058_RS0119260 +0.7 1.0 hypothetical protein compare
HMPREF1058_RS21310 +0.7 2.4 hypothetical protein compare
HMPREF1058_RS18535 +0.7 1.6 nucleotidyltransferase domain-containing protein compare
HMPREF1058_RS12690 +0.7 2.1 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS13200 +0.6 2.0 hypothetical protein compare
HMPREF1058_RS0119380 +0.6 2.2 IS66 family insertion sequence element accessory protein TnpB compare
HMPREF1058_RS21725 +0.6 2.5 hypothetical protein compare
HMPREF1058_RS16715 +0.6 1.9 hypothetical protein compare
HMPREF1058_RS17370 +0.6 3.2 UpxY family transcription antiterminator compare
HMPREF1058_RS02000 +0.6 2.1 type II toxin-antitoxin system HicA family toxin compare
HMPREF1058_RS01235 +0.6 2.9 phosphoserine phosphatase SerB compare
HMPREF1058_RS04575 +0.6 1.4 hypothetical protein compare
HMPREF1058_RS01845 +0.5 1.9 site-specific integrase compare
HMPREF1058_RS21575 +0.5 1.3 mobilization protein compare
HMPREF1058_RS02495 +0.5 3.7 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS15360 +0.5 2.8 hypothetical protein compare
HMPREF1058_RS04545 +0.5 2.2 hypothetical protein compare
HMPREF1058_RS19025 +0.5 1.1 hypothetical protein compare
HMPREF1058_RS14020 +0.5 3.6 cardiolipin synthase compare
HMPREF1058_RS05200 +0.5 2.6 MaoC family dehydratase compare
HMPREF1058_RS17725 +0.5 3.8 hypothetical protein compare
HMPREF1058_RS15435 +0.5 4.0 hypothetical protein compare
HMPREF1058_RS16190 +0.5 2.1 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS10305 +0.5 2.8 hypothetical protein compare
HMPREF1058_RS03050 +0.5 1.2 hypothetical protein compare
HMPREF1058_RS02320 +0.5 2.4 hypothetical protein compare
HMPREF1058_RS16515 +0.5 3.1 GNAT family N-acetyltransferase compare
HMPREF1058_RS16270 +0.5 2.5 MATE family efflux transporter compare
HMPREF1058_RS07840 +0.5 1.4 hypothetical protein compare
HMPREF1058_RS01925 +0.5 2.2 helix-turn-helix domain-containing protein compare
HMPREF1058_RS04505 +0.5 2.4 type I restriction enzyme HsdR N-terminal domain-containing protein compare
HMPREF1058_RS02910 +0.5 4.2 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS04600 +0.5 0.9 hypothetical protein compare
HMPREF1058_RS01625 +0.5 1.6 hypothetical protein compare
HMPREF1058_RS15080 +0.5 3.6 glycoside hydrolase family 97 protein compare
HMPREF1058_RS17820 +0.5 2.7 energy-dependent translational throttle protein EttA compare
HMPREF1058_RS14600 +0.5 2.3 DNA alkylation repair protein compare
HMPREF1058_RS21070 +0.5 1.9 potassium-transporting ATPase subunit F compare
HMPREF1058_RS15690 +0.5 3.1 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS04580 +0.4 1.0 hypothetical protein compare
HMPREF1058_RS19140 +0.4 1.7 hypothetical protein compare
HMPREF1058_RS12995 +0.4 1.5 hypothetical protein compare
HMPREF1058_RS17215 +0.4 3.6 DEAD/DEAH box helicase compare
HMPREF1058_RS19195 +0.4 1.7 hypothetical protein compare
HMPREF1058_RS06265 +0.4 2.9 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS14355 +0.4 1.8 GNAT family N-acetyltransferase compare
HMPREF1058_RS10955 +0.4 2.8 phosphatase PAP2 family protein compare
HMPREF1058_RS01085 +0.4 2.1 DUF134 domain-containing protein compare
HMPREF1058_RS13735 +0.4 2.6 hypothetical protein compare
HMPREF1058_RS21550 +0.4 1.4 hypothetical protein compare
HMPREF1058_RS10010 +0.4 1.3 hypothetical protein compare
HMPREF1058_RS11270 +0.4 3.3 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS17600 +0.4 1.5 hypothetical protein compare
HMPREF1058_RS19000 +0.4 1.7 type II toxin-antitoxin system RelE/ParE family toxin compare
HMPREF1058_RS08685 +0.4 2.7 hypothetical protein compare
HMPREF1058_RS10135 +0.4 2.0 hypothetical protein compare
HMPREF1058_RS04475 +0.4 2.3 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS14485 +0.4 2.3 lipoyl synthase compare
HMPREF1058_RS11165 +0.4 3.0 glycoside hydrolase family 127 protein compare
HMPREF1058_RS05695 +0.4 1.4 helix-turn-helix domain-containing protein compare
HMPREF1058_RS15090 +0.4 3.0 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS19010 +0.4 1.7 M48 family metallopeptidase compare
HMPREF1058_RS15855 +0.4 2.7 uridine kinase compare
HMPREF1058_RS17105 +0.4 2.5 hypothetical protein compare
HMPREF1058_RS18110 +0.4 2.1 LUD domain-containing protein compare
HMPREF1058_RS00440 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS13900 +0.4 1.3 YraN family protein compare
HMPREF1058_RS03275 +0.4 1.6 hypothetical protein compare
HMPREF1058_RS06945 +0.4 0.7 tRNA-Thr compare
HMPREF1058_RS05020 +0.4 2.5 twin-arginine translocase subunit TatC compare
HMPREF1058_RS04150 +0.4 2.2 proline/glycine betaine ABC transporter permease compare
HMPREF1058_RS05185 +0.4 2.6 hypothetical protein compare
HMPREF1058_RS16525 +0.4 1.3 hypothetical protein compare
HMPREF1058_RS13090 +0.4 1.3 UpxY family transcription antiterminator compare
HMPREF1058_RS07910 +0.4 1.7 response regulator transcription factor compare
HMPREF1058_RS18870 +0.4 0.7 hypothetical protein compare
HMPREF1058_RS15445 +0.4 2.2 DUF418 domain-containing protein compare
HMPREF1058_RS02305 +0.4 2.2 hypothetical protein compare
HMPREF1058_RS03475 +0.4 0.9 radical SAM protein compare
HMPREF1058_RS06010 +0.4 2.6 efflux transporter outer membrane subunit compare
HMPREF1058_RS0119820 +0.4 1.2 hypothetical protein compare
HMPREF1058_RS18610 +0.4 1.8 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS03505 +0.4 1.7 TIGR03905 family TSCPD domain-containing protein compare
HMPREF1058_RS08500 +0.4 1.7 CidA/LrgA family protein compare
HMPREF1058_RS18105 +0.4 3.0 lactate utilization protein compare
HMPREF1058_RS00610 +0.4 2.2 DsbA family protein compare
HMPREF1058_RS02485 +0.4 2.1 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS0119335 +0.4 1.2 site-specific integrase compare
HMPREF1058_RS02250 +0.4 3.2 hypothetical protein compare
HMPREF1058_RS15025 +0.4 2.5 FecR family protein compare
HMPREF1058_RS06725 +0.4 2.7 glycosyl transferase compare
HMPREF1058_RS03200 +0.4 1.8 V-type ATP synthase subunit K compare
HMPREF1058_RS06255 +0.4 2.6 hypothetical protein compare
HMPREF1058_RS15450 +0.4 3.0 transcription-repair coupling factor compare
HMPREF1058_RS17190 +0.4 2.0 hypothetical protein compare
HMPREF1058_RS03295 +0.4 0.5 sulfur carrier protein ThiS compare
HMPREF1058_RS11815 +0.4 2.6 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS0119575 +0.3 0.9 hypothetical protein compare
HMPREF1058_RS0119645 +0.3 1.8 AAA family ATPase compare
HMPREF1058_RS04520 +0.3 0.7 hypothetical protein compare
HMPREF1058_RS0119640 +0.3 1.7 hypothetical protein compare
HMPREF1058_RS13045 +0.3 1.2 hypothetical protein compare
HMPREF1058_RS12975 +0.3 2.4 hypothetical protein compare
HMPREF1058_RS0119995 +0.3 1.5 DUF3795 domain-containing protein compare
HMPREF1058_RS10805 +0.3 2.2 FecR family protein compare
HMPREF1058_RS02800 +0.3 2.2 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS03480 +0.3 1.6 ATP-binding protein compare
HMPREF1058_RS16955 +0.3 1.5 cold shock domain-containing protein compare
HMPREF1058_RS06420 +0.3 1.2 type II toxin-antitoxin system HicA family toxin compare
HMPREF1058_RS10615 +0.3 1.4 acyl carrier protein compare
HMPREF1058_RS03935 +0.3 2.2 hypothetical protein compare
HMPREF1058_RS04740 +0.3 1.6 DUF5606 domain-containing protein compare
HMPREF1058_RS03925 +0.3 1.2 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS16565 +0.3 1.6 TlpA family protein disulfide reductase compare
HMPREF1058_RS04030 +0.3 2.6 universal stress protein compare
HMPREF1058_RS21635 +0.3 0.6 transcriptional regulator compare
HMPREF1058_RS11080 +0.3 2.2 ORF6N domain-containing protein compare
HMPREF1058_RS09825 +0.3 1.6 RteC domain-containing protein compare
HMPREF1058_RS04560 +0.3 1.3 hypothetical protein compare
HMPREF1058_RS14160 +0.3 0.9 hypothetical protein compare
HMPREF1058_RS21475 +0.3 0.5 smalltalk protein compare
HMPREF1058_RS17160 +0.3 1.0 DUF4847 family protein compare
HMPREF1058_RS03245 +0.3 0.8 thiamine phosphate synthase compare
HMPREF1058_RS15770 +0.3 1.6 FtsX-like permease family protein compare
HMPREF1058_RS04555 +0.3 1.1 YqaJ viral recombinase family protein compare
HMPREF1058_RS09895 +0.3 1.8 DUF4141 domain-containing protein compare
HMPREF1058_RS17460 +0.3 2.3 nucleotidyl transferase AbiEii/AbiGii toxin family protein compare
HMPREF1058_RS09740 +0.3 2.4 glycosyltransferase family 4 protein compare
HMPREF1058_RS08075 +0.3 1.6 hypothetical protein compare
HMPREF1058_RS19030 +0.3 1.9 hypothetical protein compare
HMPREF1058_RS18810 +0.3 1.4 phosphohydrolase compare
HMPREF1058_RS00505 +0.3 1.8 hypothetical protein compare
HMPREF1058_RS01360 +0.3 2.2 DUF3871 family protein compare
HMPREF1058_RS0119510 +0.3 1.7 hypothetical protein compare
HMPREF1058_RS15335 +0.3 2.0 hypothetical protein compare
HMPREF1058_RS0119230 +0.3 1.4 Txe/YoeB family addiction module toxin compare
HMPREF1058_RS06035 +0.3 1.5 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS03640 +0.3 2.3 acyltransferase compare
HMPREF1058_RS0119490 +0.3 1.5 DDE transposase compare
HMPREF1058_RS06935 +0.3 1.4 AAA family ATPase compare
HMPREF1058_RS01345 +0.3 1.7 recombinase family protein compare
HMPREF1058_RS09785 +0.3 0.9 DUF3945 domain-containing protein compare
HMPREF1058_RS13950 +0.3 1.6 immunity 17 family protein compare
HMPREF1058_RS17435 +0.3 0.9 DUF3575 domain-containing protein compare
HMPREF1058_RS12990 +0.3 0.8 hypothetical protein compare
HMPREF1058_RS10070 +0.3 1.8 uracil phosphoribosyltransferase compare
HMPREF1058_RS21045 +0.3 1.3 hypothetical protein compare
HMPREF1058_RS19045 +0.3 1.5 hypothetical protein compare
HMPREF1058_RS01065 +0.3 1.1 hypothetical protein compare
HMPREF1058_RS05105 +0.3 0.9 hypothetical protein compare
HMPREF1058_RS16455 +0.3 2.1 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS21210 +0.3 0.9 hypothetical protein compare
HMPREF1058_RS09960 +0.3 1.4 hypothetical protein compare
HMPREF1058_RS12640 +0.3 1.4 hypothetical protein compare
HMPREF1058_RS19210 +0.3 0.6 hypothetical protein compare
HMPREF1058_RS17355 +0.3 2.2 glycosyltransferase family 4 protein compare
HMPREF1058_RS13020 +0.3 0.9 hypothetical protein compare
HMPREF1058_RS16305 +0.3 1.3 CRISPR-associated endonuclease Cas2 compare
HMPREF1058_RS18100 +0.3 1.6 (Fe-S)-binding protein compare
HMPREF1058_RS02960 +0.3 1.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
HMPREF1058_RS07845 +0.3 1.4 S26 family signal peptidase compare
HMPREF1058_RS05725 +0.3 0.5 hypothetical protein compare
HMPREF1058_RS03555 +0.3 0.9 glutathione peroxidase compare
HMPREF1058_RS17400 +0.3 1.5 tyrosine-protein kinase compare
HMPREF1058_RS01920 +0.3 1.5 hypothetical protein compare
HMPREF1058_RS07370 +0.3 2.3 N-acetylglucosamine-6-phosphate deacetylase compare
HMPREF1058_RS17665 +0.3 1.0 hypothetical protein compare
HMPREF1058_RS00465 +0.3 1.0 translation initiation factor compare
HMPREF1058_RS07735 +0.3 1.2 chloride channel protein compare
HMPREF1058_RS02085 +0.3 2.1 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS11365 +0.3 1.6 MFS transporter compare
HMPREF1058_RS03710 +0.3 1.9 hypothetical protein compare
HMPREF1058_RS18605 +0.3 2.0 hydroxylamine reductase compare
HMPREF1058_RS04510 +0.3 1.4 hypothetical protein compare
HMPREF1058_RS16465 +0.3 1.5 transcriptional repressor compare
HMPREF1058_RS09160 +0.3 1.8 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase compare
HMPREF1058_RS00690 +0.3 1.6 DUF3332 domain-containing protein compare
HMPREF1058_RS08220 +0.3 1.8 RNA polymerase sigma-70 factor compare
HMPREF1058_RS01720 +0.3 1.5 lysine exporter LysO family protein compare
HMPREF1058_RS02385 +0.3 2.1 FecR family protein compare
HMPREF1058_RS06650 +0.3 1.4 xylose isomerase compare
HMPREF1058_RS01100 +0.3 1.6 DUF4377 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in mouse experiments

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono across organisms