Experiment set3S301 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS14610 -7.6 -5.3 adenylosuccinate synthase compare
HMPREF1058_RS12490 -7.6 -4.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS15075 -7.4 -7.2 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS06875 -6.8 -8.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HMPREF1058_RS16760 -6.3 -4.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS10995 -6.3 -10.5 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS06195 -6.3 -4.3 diaminopimelate decarboxylase compare
HMPREF1058_RS08025 -6.2 -10.3 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS06870 -6.2 -19.4 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS07955 -5.8 -21.4 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS11730 -5.8 -3.9 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS14770 -5.2 -13.3 prephenate dehydrogenase compare
HMPREF1058_RS11040 -4.9 -14.7 polysaccharide deacetylase family protein compare
HMPREF1058_RS06310 -4.9 -3.4 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS09675 -4.9 -6.7 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS14785 -4.7 -12.3 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS08535 -4.6 -3.1 elongation factor P compare
HMPREF1058_RS14005 -4.4 -5.2 3-dehydroquinate synthase compare
HMPREF1058_RS10840 -4.3 -4.1 hypothetical protein compare
HMPREF1058_RS16625 -4.3 -11.4 hypothetical protein compare
HMPREF1058_RS07655 -4.3 -3.5 hypothetical protein compare
HMPREF1058_RS06600 -4.0 -7.5 DedA family protein compare
HMPREF1058_RS16730 -3.9 -5.3 chorismate synthase compare
HMPREF1058_RS13970 -3.9 -5.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS16750 -3.9 -2.7 shikimate dehydrogenase compare
HMPREF1058_RS06190 -3.8 -8.8 aspartate kinase compare
HMPREF1058_RS16620 -3.8 -15.4 GGGtGRT protein compare
HMPREF1058_RS15395 -3.8 -2.6 dihydroorotase compare
HMPREF1058_RS14035 -3.7 -4.3 hypothetical protein compare
HMPREF1058_RS03000 -3.7 -15.8 IMP dehydrogenase compare
HMPREF1058_RS11310 -3.6 -9.9 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS18265 -3.5 -5.6 aspartate 1-decarboxylase compare
HMPREF1058_RS17130 -3.5 -5.6 tetratricopeptide repeat protein compare
HMPREF1058_RS03085 -3.4 -3.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS12105 -3.3 -4.0 shikimate kinase compare
HMPREF1058_RS11490 -3.2 -8.4 redox-regulated ATPase YchF compare
HMPREF1058_RS03970 -3.2 -3.0 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS09185 -3.0 -8.7 DUF4252 domain-containing protein compare
HMPREF1058_RS00625 -3.0 -13.5 MFS transporter compare
HMPREF1058_RS10850 -3.0 -18.0 glycosyltransferase family 2 protein compare
HMPREF1058_RS16845 -3.0 -9.9 SurA N-terminal domain-containing protein compare
HMPREF1058_RS14465 -3.0 -2.0 enoyl-ACP reductase compare
HMPREF1058_RS10835 -2.9 -12.6 UDP-galactopyranose mutase compare
HMPREF1058_RS03510 -2.9 -7.5 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS17080 -2.8 -1.9 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS16500 -2.8 -8.6 OadG family protein compare
HMPREF1058_RS06040 -2.7 -10.2 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS16505 -2.6 -13.2 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS16495 -2.6 -6.6 biotin/lipoyl-binding protein compare
HMPREF1058_RS03980 -2.6 -2.4 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS05140 -2.6 -6.6 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS03535 -2.5 -2.9 UvrD-helicase domain-containing protein compare
HMPREF1058_RS02880 -2.5 -15.9 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS06560 -2.5 -13.7 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS11890 -2.5 -6.2 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS03530 -2.5 -1.7 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS00595 -2.5 -6.2 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS02405 -2.4 -18.9 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS09180 -2.4 -7.4 hypothetical protein compare
HMPREF1058_RS14220 -2.4 -6.0 energy transducer TonB compare
HMPREF1058_RS12505 -2.4 -1.6 RNA polymerase factor sigma-54 compare
HMPREF1058_RS14790 -2.3 -9.9 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS10295 -2.3 -4.9 hypothetical protein compare
HMPREF1058_RS15390 -2.3 -6.8 5-methyltetrahydrofolate--homocysteine methyltransferase compare
HMPREF1058_RS02410 -2.3 -17.9 methylmalonyl-CoA mutase compare
HMPREF1058_RS06880 -2.2 -9.9 amidophosphoribosyltransferase compare
HMPREF1058_RS06410 -2.2 -5.5 elongation factor 4 compare
HMPREF1058_RS02975 -2.1 -6.5 hypothetical protein compare
HMPREF1058_RS08295 -2.1 -9.4 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS17155 -2.1 -5.0 dCMP deaminase family protein compare
HMPREF1058_RS09590 -2.0 -10.0 hypothetical protein compare
HMPREF1058_RS02885 -2.0 -12.2 response regulator transcription factor compare
HMPREF1058_RS14795 -2.0 -7.3 prephenate dehydratase compare
HMPREF1058_RS14200 -2.0 -12.6 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS10920 -2.0 -3.5 viroplasmin family protein compare
HMPREF1058_RS03755 -2.0 -11.0 DUF3078 domain-containing protein compare
HMPREF1058_RS07245 -2.0 -4.6 Rne/Rng family ribonuclease compare
HMPREF1058_RS11205 -1.9 -2.4 radical SAM protein compare
HMPREF1058_RS03800 -1.9 -11.0 serine hydroxymethyltransferase compare
HMPREF1058_RS13655 -1.9 -14.9 cardiolipin synthase compare
HMPREF1058_RS15375 -1.9 -3.1 DUF4369 domain-containing protein compare
HMPREF1058_RS00630 -1.9 -10.5 carbohydrate kinase compare
HMPREF1058_RS06225 -1.9 -5.4 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS13965 -1.9 -3.2 hypothetical protein compare
HMPREF1058_RS16835 -1.8 -10.7 ketol-acid reductoisomerase compare
HMPREF1058_RS01650 -1.8 -8.0 hypothetical protein compare
HMPREF1058_RS04070 -1.8 -6.9 hypothetical protein compare
HMPREF1058_RS04075 -1.8 -4.4 DUF58 domain-containing protein compare
HMPREF1058_RS16685 -1.8 -13.1 methionine synthase compare
HMPREF1058_RS18675 -1.7 -5.6 ATP synthase F0 subunit C compare
HMPREF1058_RS13910 -1.7 -5.5 nucleoside deaminase compare
HMPREF1058_RS04080 -1.7 -6.4 AAA family ATPase compare
HMPREF1058_RS06380 -1.7 -7.7 copper homeostasis protein CutC compare
HMPREF1058_RS06915 -1.7 -8.8 diaminopimelate epimerase compare
HMPREF1058_RS04050 -1.7 -7.4 protein BatD compare
HMPREF1058_RS07670 -1.7 -3.8 HAMP domain-containing histidine kinase compare
HMPREF1058_RS18695 -1.7 -2.9 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS02750 -1.6 -2.1 BamA/TamA family outer membrane protein compare
HMPREF1058_RS10270 -1.6 -5.9 hypothetical protein compare
HMPREF1058_RS00560 -1.6 -3.5 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS07960 -1.6 -13.3 response regulator compare
HMPREF1058_RS01800 -1.6 -4.0 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS04025 -1.6 -8.6 hypothetical protein compare
HMPREF1058_RS10290 -1.6 -3.3 hypothetical protein compare
HMPREF1058_RS02100 -1.5 -9.7 efflux RND transporter permease subunit compare
HMPREF1058_RS16510 -1.5 -5.5 methylmalonyl-CoA epimerase compare
HMPREF1058_RS13350 -1.5 -8.6 Trk system potassium transporter TrkA compare
HMPREF1058_RS14550 -1.5 -11.2 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS09445 -1.5 -2.2 tyrosine-type recombinase/integrase compare
HMPREF1058_RS14130 -1.4 -6.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HMPREF1058_RS00590 -1.4 -6.3 hypothetical protein compare
HMPREF1058_RS16490 -1.4 -9.3 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1058_RS15435 -1.4 -8.9 hypothetical protein compare
HMPREF1058_RS02170 -1.4 -8.9 hypothetical protein compare
HMPREF1058_RS02095 -1.4 -6.7 efflux transporter outer membrane subunit compare
HMPREF1058_RS06335 -1.4 -8.5 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS11915 -1.4 -2.2 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS10275 -1.4 -8.9 RNA-splicing ligase RtcB compare
HMPREF1058_RS10720 -1.3 -7.6 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS11930 -1.3 -4.0 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS13635 -1.3 -5.1 gliding motility lipoprotein GldH compare
HMPREF1058_RS12455 -1.3 -2.3 dUTP diphosphatase compare
HMPREF1058_RS10255 -1.3 -3.1 hypothetical protein compare
HMPREF1058_RS06910 -1.3 -9.1 LL-diaminopimelate aminotransferase compare
HMPREF1058_RS04375 -1.3 -8.0 carbon-nitrogen hydrolase compare
HMPREF1058_RS09750 -1.3 -6.3 glycosyltransferase compare
HMPREF1058_RS11535 -1.3 -7.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS15920 -1.3 -2.6 hypothetical protein compare
HMPREF1058_RS14835 -1.3 -5.5 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS02105 -1.3 -5.5 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS09700 -1.3 -4.2 methionine--tRNA ligase compare
HMPREF1058_RS01665 -1.3 -3.3 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS15965 -1.3 -4.5 recombinase RecA compare
HMPREF1058_RS14500 -1.3 -10.0 FprA family A-type flavoprotein compare
HMPREF1058_RS18635 -1.3 -2.3 PepSY-like domain-containing protein compare
HMPREF1058_RS16820 -1.2 -9.1 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS07215 -1.2 -9.0 two-component sensor histidine kinase compare
HMPREF1058_RS16815 -1.2 -7.8 dihydroxy-acid dehydratase compare
HMPREF1058_RS15565 -1.2 -9.1 hypothetical protein compare
HMPREF1058_RS14225 -1.2 -6.1 polyprenyl synthetase family protein compare
HMPREF1058_RS14565 -1.2 -8.9 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS08320 -1.2 -3.2 MotA/TolQ/ExbB proton channel family protein compare
HMPREF1058_RS18685 -1.2 -5.1 F0F1 ATP synthase subunit delta compare
HMPREF1058_RS11375 -1.2 -1.3 TIGR00730 family Rossman fold protein compare
HMPREF1058_RS18235 -1.2 -3.5 3'-5' exonuclease compare
HMPREF1058_RS05925 -1.2 -1.2 DUF5024 domain-containing protein compare
HMPREF1058_RS04065 -1.2 -2.2 VWA domain-containing protein compare
HMPREF1058_RS01655 -1.2 -4.5 DUF4296 domain-containing protein compare
HMPREF1058_RS06320 -1.2 -6.7 electron transport complex subunit RsxA compare
HMPREF1058_RS10360 -1.2 -2.3 hypothetical protein compare
HMPREF1058_RS15410 -1.2 -7.5 DUF4136 domain-containing protein compare
HMPREF1058_RS17775 -1.2 -4.6 hypothetical protein compare
HMPREF1058_RS14700 -1.1 -3.8 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS04370 -1.1 -5.3 agmatine deiminase family protein compare
HMPREF1058_RS07635 -1.1 -1.9 50S ribosomal protein L9 compare
HMPREF1058_RS01270 -1.1 -6.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1058_RS08770 -1.1 -4.0 cupin domain-containing protein compare
HMPREF1058_RS14505 -1.1 -2.9 mechanosensitive ion channel compare
HMPREF1058_RS02220 -1.1 -5.2 branched-chain amino acid aminotransferase compare
HMPREF1058_RS03305 -1.1 -7.8 UvrD-helicase domain-containing protein compare
HMPREF1058_RS15405 -1.1 -6.9 outer membrane beta-barrel protein compare
HMPREF1058_RS14075 -1.1 -3.4 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS14215 -1.1 -4.0 (d)CMP kinase compare
HMPREF1058_RS16440 -1.1 -5.0 endonuclease MutS2 compare
HMPREF1058_RS01280 -1.1 -5.2 adenosylcobinamide-GDP ribazoletransferase compare
HMPREF1058_RS09610 -1.1 -6.4 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS06325 -1.1 -3.6 electron transport complex subunit E compare
HMPREF1058_RS01265 -1.1 -3.3 FHA domain-containing protein compare
HMPREF1058_RS18205 -1.1 -4.5 ferrous iron transport protein B compare
HMPREF1058_RS14490 -1.1 -8.2 S9 family peptidase compare
HMPREF1058_RS12880 -1.1 -7.2 thiamine-phosphate kinase compare
HMPREF1058_RS07210 -1.1 -5.7 response regulator transcription factor compare
HMPREF1058_RS18670 -1.1 -7.2 F0F1 ATP synthase subunit A compare
HMPREF1058_RS02540 -1.1 -4.9 cyclodeaminase/cyclohydrolase family protein compare
HMPREF1058_RS01695 -1.1 -5.3 LacI family DNA-binding transcriptional regulator compare
HMPREF1058_RS12200 -1.0 -3.5 CvpA family protein compare
HMPREF1058_RS06885 -1.0 -4.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
HMPREF1058_RS08315 -1.0 -3.1 biopolymer transporter ExbD compare
HMPREF1058_RS15750 -1.0 -7.1 glucosaminidase domain-containing protein compare
HMPREF1058_RS10910 -1.0 -9.1 glycosyltransferase family 39 protein compare
HMPREF1058_RS11920 -1.0 -5.9 DUF2975 domain-containing protein compare
HMPREF1058_RS02875 -1.0 -2.9 cysteine synthase A compare
HMPREF1058_RS17885 -1.0 -8.5 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS11910 -1.0 -6.8 DEAD/DEAH box helicase compare
HMPREF1058_RS14745 -1.0 -7.4 ABC transporter substrate-binding protein compare
HMPREF1058_RS14495 -1.0 -4.8 TIGR01212 family radical SAM protein compare
HMPREF1058_RS09685 -1.0 -7.7 tetratricopeptide repeat protein compare
HMPREF1058_RS17965 -1.0 -1.9 DUF452 family protein compare
HMPREF1058_RS15520 -1.0 -2.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS10990 -1.0 -4.3 S9 family peptidase compare
HMPREF1058_RS18680 -1.0 -4.6 F0F1 ATP synthase subunit B compare
HMPREF1058_RS08840 -1.0 -7.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS14555 -1.0 -3.1 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS19090 -1.0 -1.1 tRNA-Phe compare
HMPREF1058_RS18690 -1.0 -5.9 F0F1 ATP synthase subunit alpha compare
HMPREF1058_RS10855 -1.0 -7.3 glycosyltransferase family 2 protein compare
HMPREF1058_RS17090 -1.0 -5.6 hypothetical protein compare
HMPREF1058_RS06345 -1.0 -4.6 Fe-S cluster domain-containing protein compare
HMPREF1058_RS13905 -1.0 -2.6 hypothetical protein compare
HMPREF1058_RS05780 -1.0 -6.3 PD40 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in mouse experiments

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono across organisms