Experiment set3S301 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS10230 +1.1 3.2 hypothetical protein compare
HMPREF1058_RS09890 +1.1 1.6 DUF3876 domain-containing protein compare
HMPREF1058_RS0119615 +1.1 1.4 hypothetical protein compare
HMPREF1058_RS18505 +1.0 2.0 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS01065 +0.9 2.7 hypothetical protein compare
HMPREF1058_RS01115 +0.9 4.8 hypothetical protein compare
HMPREF1058_RS21380 +0.8 2.5 hypothetical protein compare
HMPREF1058_RS02260 +0.8 6.0 hypothetical protein compare
HMPREF1058_RS04580 +0.7 1.8 hypothetical protein compare
HMPREF1058_RS21725 +0.7 2.3 hypothetical protein compare
HMPREF1058_RS02000 +0.7 2.0 type II toxin-antitoxin system HicA family toxin compare
HMPREF1058_RS11825 +0.6 2.6 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS03295 +0.6 0.8 sulfur carrier protein ThiS compare
HMPREF1058_RS04545 +0.6 2.7 hypothetical protein compare
HMPREF1058_RS01125 +0.6 2.9 Rpn family recombination-promoting nuclease/putative transposase compare
HMPREF1058_RS21550 +0.6 2.0 hypothetical protein compare
HMPREF1058_RS05695 +0.6 2.3 helix-turn-helix domain-containing protein compare
HMPREF1058_RS15080 +0.6 4.4 glycoside hydrolase family 97 protein compare
HMPREF1058_RS13090 +0.6 2.4 UpxY family transcription antiterminator compare
HMPREF1058_RS02255 +0.5 3.9 DUF3244 domain-containing protein compare
HMPREF1058_RS19085 +0.5 1.3 hypothetical protein compare
HMPREF1058_RS01880 +0.5 1.6 hypothetical protein compare
HMPREF1058_RS02250 +0.5 4.9 hypothetical protein compare
HMPREF1058_RS15090 +0.5 3.7 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS19000 +0.5 1.6 type II toxin-antitoxin system RelE/ParE family toxin compare
HMPREF1058_RS09865 +0.5 1.4 DUF3408 domain-containing protein compare
HMPREF1058_RS11165 +0.5 4.1 glycoside hydrolase family 127 protein compare
HMPREF1058_RS14020 +0.5 3.8 cardiolipin synthase compare
HMPREF1058_RS21310 +0.5 1.5 hypothetical protein compare
HMPREF1058_RS13200 +0.5 1.9 hypothetical protein compare
HMPREF1058_RS03200 +0.5 2.2 V-type ATP synthase subunit K compare
HMPREF1058_RS01920 +0.5 1.9 hypothetical protein compare
HMPREF1058_RS05415 +0.5 1.3 Hsp20/alpha crystallin family protein compare
HMPREF1058_RS19025 +0.5 1.0 hypothetical protein compare
HMPREF1058_RS09785 +0.5 1.1 DUF3945 domain-containing protein compare
HMPREF1058_RS21575 +0.5 1.3 mobilization protein compare
HMPREF1058_RS16955 +0.5 2.3 cold shock domain-containing protein compare
HMPREF1058_RS10010 +0.5 1.8 hypothetical protein compare
HMPREF1058_RS01855 +0.5 1.6 hypothetical protein compare
HMPREF1058_RS06460 +0.5 1.8 hypothetical protein compare
HMPREF1058_RS20315 +0.5 3.5 acyltransferase family protein compare
HMPREF1058_RS03505 +0.5 1.5 TIGR03905 family TSCPD domain-containing protein compare
HMPREF1058_RS19120 +0.5 0.9 hypothetical protein compare
HMPREF1058_RS21520 +0.5 0.8 hypothetical protein compare
HMPREF1058_RS0119230 +0.5 1.9 Txe/YoeB family addiction module toxin compare
HMPREF1058_RS05185 +0.5 2.9 hypothetical protein compare
HMPREF1058_RS16525 +0.5 2.1 hypothetical protein compare
HMPREF1058_RS01085 +0.5 3.2 DUF134 domain-containing protein compare
HMPREF1058_RS01235 +0.5 2.8 phosphoserine phosphatase SerB compare
HMPREF1058_RS15690 +0.5 2.9 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS10120 +0.4 1.7 hypothetical protein compare
HMPREF1058_RS04270 +0.4 1.1 ferredoxin compare
HMPREF1058_RS00525 +0.4 2.1 DUF4290 domain-containing protein compare
HMPREF1058_RS03690 +0.4 2.0 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS0119645 +0.4 2.1 AAA family ATPase compare
HMPREF1058_RS15895 +0.4 2.1 transcriptional repressor compare
HMPREF1058_RS12640 +0.4 2.2 hypothetical protein compare
HMPREF1058_RS21355 +0.4 1.9 mobilization protein compare
HMPREF1058_RS10615 +0.4 2.1 acyl carrier protein compare
HMPREF1058_RS04235 +0.4 1.7 NUDIX hydrolase compare
HMPREF1058_RS18565 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS15430 +0.4 3.4 aspartate-alanine antiporter compare
HMPREF1058_RS06945 +0.4 0.8 tRNA-Thr compare
HMPREF1058_RS06210 +0.4 1.5 antibiotic biosynthesis monooxygenase compare
HMPREF1058_RS02800 +0.4 2.7 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS01120 +0.4 1.4 hypothetical protein compare
HMPREF1058_RS01625 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS02320 +0.4 1.7 hypothetical protein compare
HMPREF1058_RS20715 +0.4 2.9 hypothetical protein compare
HMPREF1058_RS16190 +0.4 1.5 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS16520 +0.4 1.3 nitroreductase family protein compare
HMPREF1058_RS18415 +0.4 1.4 VOC family protein compare
HMPREF1058_RS11880 +0.4 3.6 hypothetical protein compare
HMPREF1058_RS02335 +0.4 1.4 hypothetical protein compare
HMPREF1058_RS04550 +0.4 0.6 hypothetical protein compare
HMPREF1058_RS17190 +0.4 2.1 hypothetical protein compare
HMPREF1058_RS0119260 +0.4 0.7 hypothetical protein compare
HMPREF1058_RS16675 +0.4 2.8 DUF1282 family protein compare
HMPREF1058_RS16515 +0.4 2.3 GNAT family N-acetyltransferase compare
HMPREF1058_RS04495 +0.4 2.3 serpin family protein compare
HMPREF1058_RS01360 +0.4 2.8 DUF3871 family protein compare
HMPREF1058_RS17600 +0.4 1.4 hypothetical protein compare
HMPREF1058_RS03540 +0.4 1.3 sensor histidine kinase compare
HMPREF1058_RS15935 +0.4 1.8 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
HMPREF1058_RS17725 +0.4 2.7 hypothetical protein compare
HMPREF1058_RS01370 +0.4 2.1 hypothetical protein compare
HMPREF1058_RS05725 +0.4 1.4 hypothetical protein compare
HMPREF1058_RS03710 +0.4 2.4 hypothetical protein compare
HMPREF1058_RS05355 +0.4 1.7 helix-turn-helix domain-containing protein compare
HMPREF1058_RS01915 +0.4 1.5 hypothetical protein compare
HMPREF1058_RS07130 +0.4 2.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS14355 +0.4 1.7 GNAT family N-acetyltransferase compare
HMPREF1058_RS09915 +0.4 1.1 conjugative transposon protein TraM compare
HMPREF1058_RS11520 +0.4 1.7 D-tyrosyl-tRNA(Tyr) deacylase compare
HMPREF1058_RS10330 +0.4 2.0 hypothetical protein compare
HMPREF1058_RS09825 +0.3 1.2 RteC domain-containing protein compare
HMPREF1058_RS21440 +0.3 0.9 hypothetical protein compare
HMPREF1058_RS01105 +0.3 2.2 hypothetical protein compare
HMPREF1058_RS17370 +0.3 1.2 UpxY family transcription antiterminator compare
HMPREF1058_RS16715 +0.3 0.9 hypothetical protein compare
HMPREF1058_RS03580 +0.3 1.0 UpxY family transcription antiterminator compare
HMPREF1058_RS16210 +0.3 1.2 hypothetical protein compare
HMPREF1058_RS16855 +0.3 0.4 LPS export ABC transporter periplasmic protein LptC compare
HMPREF1058_RS03180 +0.3 2.5 V-type ATP synthase subunit A compare
HMPREF1058_RS04505 +0.3 2.3 type I restriction enzyme HsdR N-terminal domain-containing protein compare
HMPREF1058_RS03450 +0.3 0.7 hypothetical protein compare
HMPREF1058_RS19030 +0.3 2.0 hypothetical protein compare
HMPREF1058_RS0120000 +0.3 1.6 hypothetical protein compare
HMPREF1058_RS01090 +0.3 2.1 DUF4852 domain-containing protein compare
HMPREF1058_RS07735 +0.3 1.5 chloride channel protein compare
HMPREF1058_RS01110 +0.3 2.3 IS256 family transposase compare
HMPREF1058_RS21210 +0.3 1.1 hypothetical protein compare
HMPREF1058_RS17460 +0.3 2.4 nucleotidyl transferase AbiEii/AbiGii toxin family protein compare
HMPREF1058_RS01100 +0.3 2.2 DUF4377 domain-containing protein compare
HMPREF1058_RS10815 +0.3 2.7 DUF4249 domain-containing protein compare
HMPREF1058_RS01720 +0.3 1.7 lysine exporter LysO family protein compare
HMPREF1058_RS18365 +0.3 2.1 methylcobamide--CoM methyltransferase compare
HMPREF1058_RS04570 +0.3 1.3 DUF1351 domain-containing protein compare
HMPREF1058_RS04130 +0.3 0.9 winged helix-turn-helix domain-containing protein compare
HMPREF1058_RS04575 +0.3 0.9 hypothetical protein compare
HMPREF1058_RS17425 +0.3 1.7 Mfa1 family fimbria major subunit compare
HMPREF1058_RS21555 +0.3 2.1 hypothetical protein compare
HMPREF1058_RS11430 +0.3 1.6 flavin reductase compare
HMPREF1058_RS04385 +0.3 1.7 methylated-DNA--[protein]-cysteine S-methyltransferase compare
HMPREF1058_RS15340 +0.3 2.3 OmpA family protein compare
HMPREF1058_RS15100 +0.3 2.0 hypothetical protein compare
HMPREF1058_RS16250 +0.3 2.4 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS00465 +0.3 0.7 translation initiation factor compare
HMPREF1058_RS01820 +0.3 0.9 hypothetical protein compare
HMPREF1058_RS05385 +0.3 1.8 methylglyoxal synthase compare
HMPREF1058_RS08000 +0.3 1.1 hypothetical protein compare
HMPREF1058_RS05520 +0.3 0.4 DUF4357 domain-containing protein compare
HMPREF1058_RS05200 +0.3 1.4 MaoC family dehydratase compare
HMPREF1058_RS19060 +0.3 1.5 type II toxin-antitoxin system RelE/ParE family toxin compare
HMPREF1058_RS10305 +0.3 1.3 hypothetical protein compare
HMPREF1058_RS13020 +0.3 0.8 hypothetical protein compare
HMPREF1058_RS01475 +0.3 1.2 hypothetical protein compare
HMPREF1058_RS18700 +0.3 1.6 class I SAM-dependent methyltransferase compare
HMPREF1058_RS04530 +0.3 0.4 hypothetical protein compare
HMPREF1058_RS08075 +0.3 1.8 hypothetical protein compare
HMPREF1058_RS03235 +0.3 2.4 ABC transporter substrate-binding protein compare
HMPREF1058_RS19140 +0.3 0.9 hypothetical protein compare
HMPREF1058_RS07365 +0.3 1.9 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS12570 +0.3 2.0 HIT family protein compare
HMPREF1058_RS16205 +0.3 2.1 DUF3987 domain-containing protein compare
HMPREF1058_RS16225 +0.3 0.8 DUF4250 domain-containing protein compare
HMPREF1058_RS01955 +0.3 1.4 hypothetical protein compare
HMPREF1058_RS00390 +0.3 1.7 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS13895 +0.3 1.3 MmcQ/YjbR family DNA-binding protein compare
HMPREF1058_RS0119510 +0.3 1.4 hypothetical protein compare
HMPREF1058_RS13065 +0.3 2.6 hypothetical protein compare
HMPREF1058_RS02685 +0.3 1.3 substrate-binding domain-containing protein compare
HMPREF1058_RS0120120 +0.3 1.6 hypothetical protein compare
HMPREF1058_RS03600 +0.3 2.1 oligosaccharide repeat unit polymerase compare
HMPREF1058_RS04475 +0.3 1.3 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS07845 +0.3 0.9 S26 family signal peptidase compare
HMPREF1058_RS0119435 +0.3 2.0 IS982 family transposase compare
HMPREF1058_RS03190 +0.3 1.7 V-type ATP synthase subunit D compare
HMPREF1058_RS16950 +0.3 1.9 ribonuclease Z compare
HMPREF1058_RS02245 +0.3 1.1 cytidylate kinase-like family protein compare
HMPREF1058_RS16630 +0.3 1.3 DMP19 family protein compare
HMPREF1058_RS07910 +0.3 1.4 response regulator transcription factor compare
HMPREF1058_RS04450 +0.3 1.8 OmpA family protein compare
HMPREF1058_RS04435 +0.3 1.3 hypothetical protein compare
HMPREF1058_RS06725 +0.3 2.2 glycosyl transferase compare
HMPREF1058_RS09895 +0.3 1.2 DUF4141 domain-containing protein compare
HMPREF1058_RS08220 +0.3 1.6 RNA polymerase sigma-70 factor compare
HMPREF1058_RS14380 +0.3 1.3 AAA family ATPase compare
HMPREF1058_RS17610 +0.3 1.6 DUF47 domain-containing protein compare
HMPREF1058_RS04500 +0.3 2.0 hypothetical protein compare
HMPREF1058_RS21045 +0.3 1.3 hypothetical protein compare
HMPREF1058_RS01925 +0.3 1.3 helix-turn-helix domain-containing protein compare
HMPREF1058_RS04460 +0.3 1.3 PepSY-like domain-containing protein compare
HMPREF1058_RS05015 +0.3 0.8 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1058_RS04445 +0.3 0.7 porin family protein compare
HMPREF1058_RS02620 +0.3 2.2 [FeFe] hydrogenase H-cluster radical SAM maturase HydG compare
HMPREF1058_RS18990 +0.3 1.6 hypothetical protein compare
HMPREF1058_RS15115 +0.3 2.1 CapA family protein compare
HMPREF1058_RS03490 +0.3 1.6 glycosyltransferase family 4 protein compare
HMPREF1058_RS09905 +0.3 0.9 conjugative transposon protein TraK compare
HMPREF1058_RS10225 +0.3 1.0 hypothetical protein compare
HMPREF1058_RS00430 +0.3 1.7 DUF4488 domain-containing protein compare
HMPREF1058_RS19175 +0.3 1.6 hypothetical protein compare
HMPREF1058_RS08145 +0.3 2.0 PD-(D/E)XK nuclease family transposase compare
HMPREF1058_RS03175 +0.3 1.4 DUF2764 domain-containing protein compare
HMPREF1058_RS05360 +0.3 0.7 helix-turn-helix domain-containing protein compare
HMPREF1058_RS10805 +0.3 1.7 FecR family protein compare
HMPREF1058_RS0120135 +0.3 1.1 hypothetical protein compare
HMPREF1058_RS01830 +0.3 1.0 DUF882 domain-containing protein compare
HMPREF1058_RS09160 +0.3 1.8 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase compare
HMPREF1058_RS03485 +0.3 0.9 RloB domain-containing protein compare
HMPREF1058_RS18090 +0.3 1.7 hemerythrin domain-containing protein compare
HMPREF1058_RS16270 +0.3 1.4 MATE family efflux transporter compare
HMPREF1058_RS18915 +0.3 0.6 recombination protein NinG compare
HMPREF1058_RS04585 +0.3 1.3 hypothetical protein compare
HMPREF1058_RS13045 +0.3 1.1 hypothetical protein compare
HMPREF1058_RS18895 +0.3 0.7 hypothetical protein compare
HMPREF1058_RS00755 +0.3 1.7 PorT family protein compare
HMPREF1058_RS03210 +0.3 2.3 alpha-glucan family phosphorylase compare
HMPREF1058_RS03425 +0.3 1.9 glycosyltransferase family 4 protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in mouse experiments

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono across organisms