Experiment set3S10 for Castellaniella sp019104865 MT123

Compare to:

Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

200 most important genes:

  gene name fitness t score description  
ABCV34_RS15205 -4.2 -2.5 glycosyltransferase family 2 protein compare
ABCV34_RS04270 -3.1 -1.9 FimV/HubP family polar landmark protein compare
ABCV34_RS02445 -3.1 -3.0 glycosyltransferase family 2 protein compare
ABCV34_RS02340 -2.8 -2.4 SDR family oxidoreductase compare
ABCV34_RS13000 -2.7 -1.8 glycosyltransferase compare
ABCV34_RS07980 -2.7 -3.0 Holliday junction branch migration protein RuvA compare
ABCV34_RS12980 -2.6 -7.6 hypothetical protein compare
ABCV34_RS15220 -2.6 -3.0 ChbG/HpnK family deacetylase compare
ABCV34_RS12915 -2.6 -3.0 nucleotide sugar dehydrogenase compare
ABCV34_RS06645 -2.5 -1.7 tRNA-Val compare
ABCV34_RS09375 -2.5 -3.5 glycosyltransferase compare
ABCV34_RS12845 -2.4 -3.3 transcription termination/antitermination NusG family protein compare
ABCV34_RS14340 -2.4 -2.2 PTS sugar transporter subunit IIA compare
ABCV34_RS12955 -2.3 -8.0 ABC transporter ATP-binding protein compare
ABCV34_RS06985 -2.3 -2.2 beta-N-acetylhexosaminidase compare
ABCV34_RS13015 -2.3 -3.7 glucose-1-phosphate thymidylyltransferase RfbA compare
ABCV34_RS12985 -2.1 -8.9 methyltransferase, TIGR04325 family compare
ABCV34_RS12965 -2.0 -8.9 acylneuraminate cytidylyltransferase family protein compare
ABCV34_RS00515 -2.0 -5.8 site-specific tyrosine recombinase XerD compare
ABCV34_RS09405 -2.0 -1.9 c-type cytochrome compare
ABCV34_RS04285 -2.0 -3.3 3-isopropylmalate dehydratase small subunit compare
ABCV34_RS13455 -2.0 -3.9 tyrosine recombinase XerC compare
ABCV34_RS12950 -2.0 -4.8 ABC transporter permease compare
ABCV34_RS10685 -1.9 -2.6 TlpA disulfide reductase family protein compare
ABCV34_RS10800 -1.9 -4.4 glutamate 5-kinase compare
ABCV34_RS15150 -1.9 -2.1 phosphoglycerate dehydrogenase compare
ABCV34_RS12970 -1.9 -9.5 GDP-mannose 4,6-dehydratase compare
ABCV34_RS04180 -1.9 -2.3 M3 family metallopeptidase compare
ABCV34_RS05685 -1.8 -3.9 flagellar motor switch protein FliN compare
ABCV34_RS15430 -1.8 -2.5 NADP-dependent malic enzyme compare
ABCV34_RS12975 -1.7 -5.1 N-acetylneuraminate synthase family protein compare
ABCV34_RS09295 -1.7 -1.2 5-carboxymethyl-2-hydroxymuconate Delta-isomerase compare
ABCV34_RS04795 -1.6 -5.8 glutathione synthase compare
ABCV34_RS13035 -1.6 -4.5 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABCV34_RS10840 -1.6 -2.1 ABC transporter permease compare
ABCV34_RS13160 -1.5 -4.7 ABC transporter ATP-binding protein compare
ABCV34_RS11390 -1.5 -2.8 TetR/AcrR family transcriptional regulator compare
ABCV34_RS02570 -1.5 -2.1 aminopeptidase N compare
ABCV34_RS02455 -1.5 -6.8 glycosyltransferase family 4 protein compare
ABCV34_RS15425 -1.5 -1.2 hypothetical protein compare
ABCV34_RS09820 -1.4 -6.2 RNA pyrophosphohydrolase compare
ABCV34_RS03805 -1.4 -1.2 MerR family DNA-binding protein compare
ABCV34_RS07000 -1.4 -3.5 M48 family metallopeptidase compare
ABCV34_RS13415 -1.4 -2.1 ATP-dependent protease subunit HslV compare
ABCV34_RS11155 -1.4 -4.6 glutamate synthase subunit beta compare
ABCV34_RS11150 -1.4 -9.9 glutamate synthase-related protein compare
ABCV34_RS01910 -1.3 -4.4 iron transporter compare
ABCV34_RS10555 -1.3 -4.2 serine hydroxymethyltransferase compare
ABCV34_RS11195 -1.3 -2.1 MlaA family lipoprotein compare
ABCV34_RS14110 -1.3 -1.9 phosphoadenylyl-sulfate reductase compare
ABCV34_RS02545 -1.3 -4.7 oxygen-dependent coproporphyrinogen oxidase compare
ABCV34_RS11250 -1.2 -1.8 imidazole glycerol phosphate synthase subunit HisF compare
ABCV34_RS01920 -1.2 -1.9 FTR1 family protein compare
ABCV34_RS03960 -1.2 -4.1 TatD family hydrolase compare
ABCV34_RS09735 -1.2 -2.1 SWIB/MDM2 domain-containing protein compare
ABCV34_RS14250 -1.2 -5.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABCV34_RS02350 -1.2 -2.2 sulfite exporter TauE/SafE family protein compare
ABCV34_RS03570 -1.2 -2.1 ATP-dependent DNA helicase RecG compare
ABCV34_RS13025 -1.2 -4.9 NAD-dependent epimerase/dehydratase family protein compare
ABCV34_RS14795 -1.2 -2.8 FadR/GntR family transcriptional regulator compare
ABCV34_RS01805 -1.1 -0.9 PepSY domain-containing protein compare
ABCV34_RS05085 -1.1 -2.2 iron-sulfur cluster assembly protein IscA compare
ABCV34_RS06835 -1.1 -4.8 helix-turn-helix domain-containing protein compare
ABCV34_RS02965 -1.1 -4.7 exodeoxyribonuclease V subunit beta compare
ABCV34_RS15230 -1.1 -4.2 universal stress protein compare
ABCV34_RS05740 -1.1 -4.1 flagellar basal body L-ring protein FlgH compare
ABCV34_RS06530 -1.1 -2.2 TonB family protein compare
ABCV34_RS15540 -1.1 -3.0 transcription elongation factor GreA compare
ABCV34_RS06780 -1.1 -1.8 cold-shock protein compare
ABCV34_RS12990 -1.0 -6.6 glycosyltransferase family 2 protein compare
ABCV34_RS03475 -1.0 -2.5 hypothetical protein compare
ABCV34_RS04260 -1.0 -3.4 TRAP transporter small permease subunit compare
ABCV34_RS01280 -1.0 -2.0 TetR/AcrR family transcriptional regulator compare
ABCV34_RS10825 -1.0 -5.6 phosphomethylpyrimidine synthase ThiC compare
ABCV34_RS02325 -1.0 -5.2 presqualene diphosphate synthase HpnD compare
ABCV34_RS14330 -1.0 -2.0 RNase adapter RapZ compare
ABCV34_RS04135 -1.0 -1.5 CvpA family protein compare
ABCV34_RS11065 -1.0 -2.7 UvrD-helicase domain-containing protein compare
ABCV34_RS10585 -1.0 -1.4 DUF6776 family protein compare
ABCV34_RS13445 -1.0 -2.2 metal ABC transporter permease compare
ABCV34_RS14635 -1.0 -0.7 Nudix family hydrolase compare
ABCV34_RS14520 -0.9 -1.2 hypothetical protein compare
ABCV34_RS01530 -0.9 -0.9 isochorismatase family protein compare
ABCV34_RS01915 -0.9 -3.0 cupredoxin domain-containing protein compare
ABCV34_RS04460 -0.9 -4.2 recombinase RecA compare
ABCV34_RS00640 -0.9 -1.1 MaoC family dehydratase compare
ABCV34_RS10160 -0.9 -2.4 AsmA family protein compare
ABCV34_RS13820 -0.9 -2.4 LysR family transcriptional regulator compare
ABCV34_RS07150 -0.9 -1.3 carboxymuconolactone decarboxylase family protein compare
ABCV34_RS01640 -0.9 -2.4 DUF2863 family protein compare
ABCV34_RS01205 -0.9 -4.9 FUSC family membrane protein compare
ABCV34_RS15900 -0.9 -2.3 DUF736 domain-containing protein compare
ABCV34_RS07495 -0.9 -1.1 MaoC family dehydratase compare
ABCV34_RS05695 -0.9 -3.4 flagellar type III secretion system pore protein FliP compare
ABCV34_RS02290 -0.9 -4.7 alanine transaminase compare
ABCV34_RS07245 -0.8 -0.8 SMR family transporter compare
ABCV34_RS06880 -0.8 -3.6 hypothetical protein compare
ABCV34_RS12905 -0.8 -4.4 O-antigen ligase family protein compare
ABCV34_RS02645 -0.8 -3.7 histidinol-phosphate transaminase compare
ABCV34_RS05445 -0.8 -1.8 hypothetical protein compare
ABCV34_RS14275 -0.8 -2.3 peptidoglycan DD-metalloendopeptidase family protein compare
ABCV34_RS08925 -0.8 -2.0 hypothetical protein compare
ABCV34_RS01430 -0.8 -2.1 metalloregulator ArsR/SmtB family transcription factor compare
ABCV34_RS08355 -0.8 -3.6 RNA polymerase sigma factor RpoE compare
ABCV34_RS10305 -0.8 -2.4 anthranilate phosphoribosyltransferase compare
ABCV34_RS11130 -0.8 -3.7 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein compare
ABCV34_RS03340 -0.8 -1.0 conjugal transfer protein compare
ABCV34_RS01735 -0.8 -3.8 cell division protein ZapE compare
ABCV34_RS02960 -0.8 -4.1 exodeoxyribonuclease V subunit gamma compare
ABCV34_RS14485 -0.8 -0.6 SCP2 sterol-binding domain-containing protein compare
ABCV34_RS02615 -0.8 -1.3 helix-turn-helix domain-containing protein compare
ABCV34_RS05305 -0.8 -2.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABCV34_RS09545 -0.8 -2.0 methionine ABC transporter ATP-binding protein compare
ABCV34_RS01885 -0.8 -2.1 RluA family pseudouridine synthase compare
ABCV34_RS06570 -0.8 -5.0 hypothetical protein compare
ABCV34_RS00365 -0.8 -1.6 TerC family protein compare
ABCV34_RS12415 -0.8 -0.6 hypothetical protein compare
ABCV34_RS10775 -0.8 -2.2 hypothetical protein compare
ABCV34_RS06855 -0.8 -3.8 cytochrome-c oxidase, cbb3-type subunit III compare
ABCV34_RS02430 -0.8 -2.9 glycosyltransferase family 25 protein compare
ABCV34_RS04280 -0.7 -3.9 3-isopropylmalate dehydrogenase compare
ABCV34_RS02450 -0.7 -2.6 polysaccharide deacetylase family protein compare
ABCV34_RS04455 -0.7 -2.5 recombination regulator RecX compare
ABCV34_RS15395 -0.7 -1.1 hypothetical protein compare
ABCV34_RS00965 -0.7 -4.2 glycosyltransferase family 39 protein compare
ABCV34_RS11225 -0.7 -3.7 ATP phosphoribosyltransferase compare
ABCV34_RS15080 -0.7 -2.1 YajQ family cyclic di-GMP-binding protein compare
ABCV34_RS09225 -0.7 -2.2 CPBP family glutamic-type intramembrane protease compare
ABCV34_RS05615 -0.7 -1.2 flagellar filament capping protein FliD compare
ABCV34_RS12430 -0.7 -4.3 RNA polymerase factor sigma-54 compare
ABCV34_RS00975 -0.7 -2.1 LysR family transcriptional regulator compare
ABCV34_RS11135 -0.7 -1.4 hypothetical protein compare
ABCV34_RS13895 -0.7 -1.5 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB compare
ABCV34_RS05120 -0.7 -1.2 transcriptional repressor LexA compare
ABCV34_RS13235 -0.7 -2.2 COX15/CtaA family protein compare
ABCV34_RS05210 -0.7 -1.5 UvrD-helicase domain-containing protein compare
ABCV34_RS05750 -0.7 -2.5 flagellar basal-body rod protein FlgF compare
ABCV34_RS12615 -0.7 -2.5 ClpXP protease specificity-enhancing factor compare
ABCV34_RS01665 -0.7 -1.9 2-methylcitrate synthase compare
ABCV34_RS10145 -0.7 -1.7 RsmD family RNA methyltransferase compare
ABCV34_RS04600 -0.7 -1.3 DUF2971 domain-containing protein compare
ABCV34_RS05670 -0.7 -1.7 flagellar hook-length control protein FliK compare
ABCV34_RS05775 -0.6 -1.5 flagellar basal body P-ring formation chaperone FlgA compare
ABCV34_RS02295 -0.6 -2.1 homoserine dehydrogenase compare
ABCV34_RS12410 -0.6 -0.5 DUF1840 domain-containing protein compare
ABCV34_RS08565 -0.6 -2.1 chromosome segregation protein SMC compare
ABCV34_RS02670 -0.6 -2.9 ATP phosphoribosyltransferase regulatory subunit compare
ABCV34_RS11870 -0.6 -0.4 chromosomal replication initiator protein DnaA compare
ABCV34_RS04235 -0.6 -1.7 ABC transporter ATP-binding protein compare
ABCV34_RS03250 -0.6 -2.8 diacylglycerol kinase compare
ABCV34_RS06675 -0.6 -0.5 DUF3293 domain-containing protein compare
ABCV34_RS02435 -0.6 -2.0 glycosyltransferase family 4 protein compare
ABCV34_RS11720 -0.6 -2.9 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
ABCV34_RS05040 -0.6 -0.6 hemerythrin domain-containing protein compare
ABCV34_RS05330 -0.6 -2.1 exodeoxyribonuclease VII large subunit compare
ABCV34_RS00820 -0.6 -2.6 Hsp33 family molecular chaperone HslO compare
ABCV34_RS03300 -0.6 -1.6 StbB family protein compare
ABCV34_RS06870 -0.6 -4.7 cytochrome-c oxidase, cbb3-type subunit I compare
ABCV34_RS14255 -0.6 -1.3 protein-export chaperone SecB compare
ABCV34_RS09600 -0.6 -2.0 magnesium transporter compare
ABCV34_RS01670 -0.6 -2.0 methylisocitrate lyase compare
ABCV34_RS10670 -0.6 -1.7 50S ribosomal protein L11 methyltransferase compare
ABCV34_RS13220 -0.6 -3.7 cation:proton antiporter compare
ABCV34_RS14315 -0.6 -1.7 YraN family protein compare
ABCV34_RS13170 -0.6 -3.0 cyanophycin synthetase compare
ABCV34_RS01890 -0.6 -1.5 peptidoglycan editing factor PgeF compare
ABCV34_RS06230 -0.6 -1.2 arsenate reductase (glutaredoxin) compare
ABCV34_RS13815 -0.6 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABCV34_RS03945 -0.6 -1.7 sulfate ABC transporter permease subunit CysW compare
ABCV34_RS13030 -0.6 -1.7 sugar transferase compare
ABCV34_RS03835 -0.6 -1.4 MerR family DNA-binding protein compare
ABCV34_RS03610 -0.5 -1.7 pyrroline-5-carboxylate reductase compare
ABCV34_RS05830 -0.5 -2.6 chemotaxis protein CheW compare
ABCV34_RS14430 -0.5 -2.7 amino acid ABC transporter substrate-binding protein compare
ABCV34_RS11245 -0.5 -2.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABCV34_RS10280 -0.5 -3.0 anthranilate synthase component I compare
ABCV34_RS02165 -0.5 -1.1 GNAT family N-acetyltransferase compare
ABCV34_RS03140 -0.5 -2.2 SHOCT domain-containing protein compare
ABCV34_RS00865 -0.5 -1.0 50S ribosomal protein L33 compare
ABCV34_RS05745 -0.5 -2.4 flagellar basal-body rod protein FlgG compare
ABCV34_RS15110 -0.5 -1.8 DMT family transporter compare
ABCV34_RS05770 -0.5 -1.9 flagellar basal body rod protein FlgB compare
ABCV34_RS06905 -0.5 -1.2 MarR family transcriptional regulator compare
ABCV34_RS12320 -0.5 -0.7 hypothetical protein compare
ABCV34_RS10740 -0.5 -0.9 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABCV34_RS10095 -0.5 -2.1 diacylglycerol kinase compare
ABCV34_RS04340 -0.5 -1.3 homoserine kinase compare
ABCV34_RS01620 -0.5 -2.4 thermonuclease family protein compare
ABCV34_RS05700 -0.5 -1.7 flagellar biosynthesis protein FliQ compare
ABCV34_RS03445 -0.5 -2.7 ABC transporter permease subunit compare
ABCV34_RS05810 -0.5 -0.8 chemotaxis response regulator CheY compare
ABCV34_RS05765 -0.5 -1.9 flagellar basal body rod protein FlgC compare
ABCV34_RS02085 -0.5 -0.9 hypothetical protein compare
ABCV34_RS05450 -0.5 -0.4 hypothetical protein compare
ABCV34_RS15795 -0.5 -2.8 cardiolipin synthase compare
ABCV34_RS07745 -0.5 -1.1 amino acid ABC transporter permease compare
ABCV34_RS05335 -0.5 -1.3 MotA/TolQ/ExbB proton channel family protein compare
ABCV34_RS09920 -0.5 -0.8 alkyl hydroperoxide reductase subunit C compare
ABCV34_RS04125 -0.5 -1.8 disulfide bond formation protein B compare
ABCV34_RS11240 -0.5 -2.3 imidazole glycerol phosphate synthase subunit HisH compare


Specific Phenotypes

None in this experiment

For Castellaniella sp019104865 MT123 in survival experiments

For survival Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate across organisms