Experiment set3IT096 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with methylglyoxal 0.008 vol%

200 most important genes:

  gene name fitness t score description  
AO353_23490 -4.6 -7.6 hydroxyacylglutathione hydrolase conserved
AO353_26955 -4.0 -6.1 lactoylglutathione lyase conserved
AO353_05415 -4.0 -3.8 hypothetical protein compare
AO353_22685 -3.9 -2.7 peroxidase compare
AO353_03590 -3.7 -3.5 crossover junction endodeoxyribonuclease RuvC compare
AO353_08110 -3.5 -5.8 glutathione synthetase compare
AO353_09315 -3.3 -12.4 LysR family transcriptional regulator compare
AO353_10055 -3.2 -12.0 DNA helicase II compare
AO353_03580 -3.2 -3.1 ATP-dependent DNA helicase RuvB compare
AO353_17405 -3.1 -7.2 glutamine amidotransferase conserved
AO353_09320 -3.1 -9.9 ATP-dependent DNA helicase RecG compare
AO353_16805 -3.1 -5.9 recombinase RecA compare
AO353_04325 -3.1 -3.6 hypothetical protein compare
AO353_14775 -3.0 -7.4 hypothetical protein compare
AO353_06865 -3.0 -16.8 catalase conserved
AO353_12105 -3.0 -7.1 peptidase S41 compare
AO353_09050 -3.0 -4.5 recombinase XerC compare
AO353_14220 -2.8 -2.5 ribosomal large subunit pseudouridine synthase D compare
AO353_10930 -2.8 -8.7 DNA polymerase I compare
AO353_16585 -2.8 -11.9 S-formylglutathione hydrolase conserved
AO353_03585 -2.7 -3.4 ATP-dependent DNA helicase RuvA compare
AO353_11730 -2.7 -8.9 glutamate--cysteine ligase compare
AO353_00495 -2.6 -3.0 DNA topoisomerase I compare
AO353_02710 -2.6 -11.5 (p)ppGpp synthetase compare
AO353_27640 -2.6 -9.0 recombination factor protein RarA conserved
AO353_09040 -2.5 -2.8 diaminopimelate epimerase compare
AO353_04565 -2.5 -6.7 nucleoid-associated protein compare
AO353_21625 -2.5 -2.8 Fe/S biogenesis protein NfuA compare
AO353_03360 -2.5 -8.6 glucose-6-phosphate dehydrogenase compare
AO353_16810 -2.4 -4.6 recombinase RecX compare
AO353_04365 -2.3 -6.4 recombinase XerD compare
AO353_12115 -2.3 -3.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_20185 -2.3 -7.0 DNA-binding protein compare
AO353_06045 -2.1 -7.2 exodeoxyribonuclease V subunit beta compare
AO353_17020 -2.0 -9.5 ATP-dependent DNA helicase DinG conserved
AO353_05660 -2.0 -9.1 DNA repair protein RecN conserved
AO353_06040 -2.0 -3.7 exodeoxyribonuclease V subunit alpha compare
AO353_00825 -2.0 -4.2 porin compare
AO353_10455 -1.9 -2.9 tRNA modification GTPase MnmE compare
AO353_21465 -1.9 -3.3 cation:proton antiporter compare
AO353_21410 -1.9 -2.9 hypothetical protein compare
AO353_02440 -1.9 -10.8 peptidase S41 compare
AO353_05135 -1.9 -8.9 toluene tolerance protein compare
AO353_02250 -1.9 -3.6 chorismate synthase compare
AO353_03615 -1.9 -3.5 cold-shock protein compare
AO353_06050 -1.8 -6.5 exodeoxyribonuclease V subunit gamma compare
AO353_07325 -1.8 -1.7 diadenosine tetraphosphatase compare
AO353_08165 -1.8 -3.4 pyrroline-5-carboxylate reductase compare
AO353_27650 -1.8 -4.7 cell division protein FtsK compare
AO353_06855 -1.8 -12.4 ABC-ATPase UvrA conserved
AO353_07355 -1.8 -5.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_05150 -1.7 -5.1 ABC transporter ATP-binding protein compare
AO353_18555 -1.7 -10.1 aromatic amino acid transporter compare
AO353_12500 -1.7 -2.5 shikimate kinase compare
AO353_14370 -1.7 -6.6 glucose-6-phosphate isomerase compare
AO353_08910 -1.7 -2.7 hypothetical protein compare
AO353_08885 -1.7 -11.3 polyphosphate kinase compare
AO353_29215 -1.7 -2.7 alpha/beta hydrolase compare
AO353_20545 -1.7 -11.9 excinuclease ABC subunit B conserved
AO353_00310 -1.7 -8.2 transaldolase compare
AO353_16915 -1.7 -8.6 hypothetical protein compare
AO353_03815 -1.7 -2.8 heme utilization protein compare
AO353_08115 -1.6 -5.8 energy transducer TonB compare
AO353_07315 -1.6 -2.8 rRNA methyltransferase compare
AO353_22520 -1.6 -2.2 hypothetical protein compare
AO353_05550 -1.6 -5.9 pseudouridine synthase compare
AO353_10985 -1.6 -3.2 hypothetical protein compare
AO353_17410 -1.6 -2.0 arylsulfate sulfotransferase compare
AO353_11165 -1.6 -7.7 hypothetical protein compare
AO353_21835 -1.6 -7.2 excinuclease ABC subunit C conserved
AO353_13200 -1.6 -9.4 exoribonuclease R compare
AO353_00185 -1.5 -1.7 phage tail protein compare
AO353_13100 -1.5 -2.0 GTPase RsgA compare
AO353_12945 -1.5 -6.2 toluene tolerance protein compare
AO353_05690 -1.5 -3.4 SsrA-binding protein compare
AO353_19145 -1.5 -4.1 protease HtpX compare
AO353_17945 -1.5 -2.7 cyclic nucleotide-binding protein compare
AO353_25990 -1.5 -5.1 aspartyl beta-hydroxylase compare
AO353_20590 -1.4 -1.7 hydrolase compare
AO353_15250 -1.4 -3.2 cytochrome B compare
AO353_21830 -1.4 -8.7 chemotaxis protein CheY compare
AO353_18170 -1.4 -6.2 aspartyl beta-hydroxylase compare
AO353_27130 -1.4 -1.9 hypothetical protein compare
AO353_21430 -1.4 -2.5 hypothetical protein compare
AO353_27855 -1.4 -2.1 MarR family transcriptional regulator compare
AO353_20170 -1.4 -4.2 trigger factor compare
AO353_16530 -1.4 -1.7 ribonuclease HII compare
AO353_16940 -1.3 -4.7 deoxycytidine triphosphate deaminase compare
AO353_00660 -1.3 -2.7 transcriptional regulator compare
AO353_01215 -1.3 -7.4 hypothetical protein compare
AO353_13040 -1.3 -5.1 esterase compare
AO353_25550 -1.3 -4.9 4-amino-4-deoxy-L-arabinose transferase compare
AO353_24130 -1.3 -2.3 hypothetical protein compare
AO353_14420 -1.3 -3.4 molecular chaperone DnaK compare
AO353_06585 -1.3 -5.7 hypothetical protein compare
AO353_13980 -1.3 -5.3 DNA repair protein RadA compare
AO353_16580 -1.3 -7.2 S-(hydroxymethyl)glutathione dehydrogenase conserved
AO353_09915 -1.2 -4.6 long-chain acyl-CoA thioester hydrolase compare
AO353_03610 -1.2 -3.9 arylsulfate sulfotransferase compare
AO353_20565 -1.2 -1.7 tRNA-Ala compare
AO353_09950 -1.2 -3.1 aspartate ammonia-lyase compare
AO353_00330 -1.2 -6.2 hypothetical protein compare
AO353_20925 -1.2 -2.2 hypothetical protein compare
AO353_21935 -1.2 -2.3 nitrite reductase compare
AO353_06415 -1.2 -3.8 hypothetical protein compare
AO353_10510 -1.2 -1.7 benzoate transporter compare
AO353_00760 -1.2 -2.4 hypothetical protein compare
AO353_05130 -1.2 -1.0 anti-anti-sigma factor compare
AO353_17445 -1.2 -2.2 hypothetical protein compare
AO353_15170 -1.2 -2.7 cytochrome D ubiquinol oxidase subunit III compare
AO353_04175 -1.2 -3.4 glycerol uptake facilitator GlpF compare
AO353_22800 -1.2 -2.7 sulfite reductase compare
AO353_07910 -1.2 -2.1 hypothetical protein compare
AO353_27725 -1.2 -2.9 GNAT family acetyltransferase compare
AO353_09000 -1.2 -3.9 argininosuccinate lyase compare
AO353_22810 -1.2 -1.3 hypothetical protein compare
AO353_14070 -1.2 -4.3 hypothetical protein compare
AO353_09260 -1.1 -5.2 ribonuclease PH compare
AO353_06495 -1.1 -3.5 gamma-glutamyl phosphate reductase compare
AO353_05420 -1.1 -1.9 peptide chain release factor 3 compare
AO353_03710 -1.1 -2.0 formyltetrahydrofolate deformylase compare
AO353_19250 -1.1 -1.8 molybdenum cofactor guanylyltransferase compare
AO353_21425 -1.1 -2.9 hypothetical protein compare
AO353_08440 -1.1 -3.1 hypothetical protein compare
AO353_09890 -1.1 -3.7 phosphate ABC transporter ATP-binding protein compare
AO353_06265 -1.1 -5.4 DEAD/DEAH box helicase compare
AO353_01220 -1.1 -1.4 hypothetical protein compare
AO353_06480 -1.0 -2.0 50S rRNA methyltransferase compare
AO353_02630 -1.0 -2.2 5,6-dimethylbenzimidazole synthase compare
AO353_03420 -1.0 -3.4 phosphogluconate dehydratase compare
AO353_03795 -1.0 -3.2 fumarate hydratase compare
AO353_05140 -1.0 -5.1 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_04520 -1.0 -3.5 elongation factor 4 compare
AO353_07515 -1.0 -1.6 transporter compare
AO353_14075 -1.0 -4.6 cation transporter compare
AO353_13225 -1.0 -2.5 50S ribosomal protein L9 compare
AO353_26945 -1.0 -1.9 transcriptional regulator compare
AO353_14940 -1.0 -2.3 malate:quinone oxidoreductase compare
AO353_11470 -1.0 -3.4 hypothetical protein compare
AO353_14740 -1.0 -2.6 GTP-binding protein compare
AO353_18540 -1.0 -2.0 pseudouridine synthase compare
AO353_22920 -1.0 -3.0 GntR family transcriptional regulator compare
AO353_10805 -1.0 -2.1 hypothetical protein compare
AO353_24260 -1.0 -1.2 hypothetical protein compare
AO353_08880 -1.0 -1.8 exopolyphosphatase compare
AO353_12935 -1.0 -3.0 glycosyltransferase compare
AO353_04340 -0.9 -1.5 hypothetical protein compare
AO353_22600 -0.9 -1.8 hypothetical protein compare
AO353_21640 -0.9 -1.6 cobalt transporter compare
AO353_27215 -0.9 -1.8 hypothetical protein compare
AO353_12055 -0.9 -3.5 cell envelope biogenesis protein AsmA compare
AO353_23910 -0.9 -2.3 response regulator compare
AO353_29000 -0.9 -2.5 pyridoxal-5'-phosphate-dependent protein subunit beta compare
AO353_09060 -0.9 -1.7 hypothetical protein compare
AO353_18960 -0.9 -1.4 terminase compare
AO353_17085 -0.9 -1.9 hypothetical protein compare
AO353_22280 -0.9 -1.0 hypothetical protein compare
AO353_21460 -0.9 -4.7 cation:proton antiporter compare
AO353_07900 -0.9 -2.3 hypothetical protein compare
AO353_09905 -0.9 -5.3 phosphate-binding protein compare
AO353_12470 -0.9 -6.7 peptidase compare
AO353_04360 -0.9 -4.0 protein-disulfide isomerase compare
AO353_28945 -0.9 -1.6 potassium-transporting ATPase subunit B compare
AO353_02280 -0.9 -1.1 DNA mismatch repair protein MutS compare
AO353_00540 -0.9 -2.3 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_15905 -0.9 -3.9 outer membrane protein assembly factor BamB compare
AO353_15285 -0.9 -5.1 hypothetical protein compare
AO353_13395 -0.9 -1.6 protein hupE compare
AO353_16600 -0.9 -4.9 stationary phase survival protein SurE compare
AO353_27875 -0.9 -3.1 exonuclease III compare
AO353_02190 -0.9 -5.9 hypothetical protein compare
AO353_15260 -0.9 -3.0 stringent starvation protein A compare
AO353_27695 -0.8 -4.1 isocitrate dehydrogenase compare
AO353_27435 -0.8 -1.2 hypothetical protein compare
AO353_19435 -0.8 -2.2 TetR family transcriptional regulator compare
AO353_21990 -0.8 -2.2 cytochrome C compare
AO353_00845 -0.8 -4.3 CmaX protein compare
AO353_06720 -0.8 -1.4 NrdR family transcriptional regulator compare
AO353_19395 -0.8 -2.4 hypothetical protein compare
AO353_29280 -0.8 -1.9 hypothetical protein compare
AO353_04015 -0.8 -4.4 histidine kinase compare
AO353_00115 -0.8 -1.7 hypothetical protein compare
AO353_16440 -0.8 -2.2 ArsC family transcriptional regulator compare
AO353_09885 -0.8 -1.4 transcriptional regulator PhoU compare
AO353_21420 -0.8 -3.0 hypothetical protein compare
AO353_16575 -0.8 -5.6 LysR family transcriptional regulator compare
AO353_05145 -0.8 -3.1 ABC transporter permease compare
AO353_27300 -0.8 -3.6 phage tail protein compare
AO353_25425 -0.8 -3.4 ABC transporter permease compare
AO353_23955 -0.8 -2.3 RND transporter compare
AO353_07210 -0.8 -2.6 indole-3-glycerol-phosphate synthase compare
AO353_13585 -0.8 -2.2 predicted copper homeostasis protein (from data) compare
AO353_09455 -0.8 -2.5 type VI secretion protein ImpA compare
AO353_16825 -0.8 -2.6 hypothetical protein compare
AO353_14115 -0.8 -3.4 gamma-glutamyl kinase compare
AO353_00170 -0.7 -1.4 lysozyme compare
AO353_27925 -0.7 -1.8 hypothetical protein compare
AO353_27680 -0.7 -2.9 ATP-dependent Clp protease adaptor ClpS compare
AO353_10900 -0.7 -4.0 hypothetical protein compare
AO353_07195 -0.7 -2.4 peroxiredoxin compare


Specific Phenotypes

For 12 genes in this experiment

For stress methylglyoxal in Pseudomonas fluorescens FW300-N2E3

For stress methylglyoxal across organisms