Experiment set3IT096 for Acidovorax sp. GW101-3H11
inner cut, R2A soft agar motility assay
Group: motilityMedia: R2A + Agar (3 g/L)
Culturing: acidovorax_3H11_ML3a, Agar plate, Aerobic, at 30 (C), shaken=0 rpm, (Solid)
By: Mark on 5/11/2015
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Specific Phenotypes
For 4 genes in this experiment
For motility Agar in Acidovorax sp. GW101-3H11
For motility Agar across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Bacterial hemoglobins | 1 |
| Cysteine Biosynthesis | 1 |
| O-Methyl Phosphoramidate Capsule Modification in Campylobacter | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| sulfate activation for sulfonation | 2 | 2 | 1 |
| assimilatory sulfate reduction I | 4 | 4 | 1 |
| assimilatory sulfate reduction IV | 4 | 3 | 1 |
| superpathway of sulfate assimilation and cysteine biosynthesis | 9 | 9 | 1 |
| superpathway of sulfur amino acid biosynthesis (Saccharomyces cerevisiae) | 10 | 7 | 1 |
| superpathway of L-methionine biosynthesis (by sulfhydrylation) | 12 | 12 | 1 |