Experiment set3IT096 for Dyella japonica UNC79MFTsu3.2

Compare to:

Sodium nitrate nitrogen source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS15460 -5.7 -3.9 type I glutamate--ammonia ligase compare
ABZR86_RS14100 -5.0 -8.3 DNA adenine methylase compare
ABZR86_RS08250 -4.9 -3.6 phosphate signaling complex protein PhoU compare
ABZR86_RS12005 -4.6 -2.9 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS19025 -4.6 -4.8 homoserine O-succinyltransferase compare
ABZR86_RS18675 -4.5 -7.5 phosphoglycerate kinase compare
ABZR86_RS06700 -4.5 -5.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABZR86_RS12885 -4.5 -3.1 magnesium-translocating P-type ATPase compare
ABZR86_RS21575 -4.4 -9.2 [protein-PII] uridylyltransferase compare
ABZR86_RS08015 -4.2 -2.2 tRNA pseudouridine(38-40) synthase TruA compare
ABZR86_RS05700 -4.2 -5.5 SsrA-binding protein SmpB compare
ABZR86_RS09885 -4.2 -2.9 trypsin-like peptidase domain-containing protein compare
ABZR86_RS10475 -3.8 -5.6 shikimate kinase compare
ABZR86_RS20980 -3.7 -4.1 hypothetical protein compare
ABZR86_RS06260 -3.7 -6.1 MBL fold metallo-hydrolase compare
ABZR86_RS19865 -3.6 -4.9 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS09635 -3.5 -5.2 phosphoglycerate dehydrogenase compare
ABZR86_RS08000 -3.5 -13.4 tryptophan synthase subunit beta compare
ABZR86_RS17085 -3.4 -7.3 type II 3-dehydroquinate dehydratase compare
ABZR86_RS06630 -3.3 -5.5 phosphopyruvate hydratase compare
ABZR86_RS09145 -3.3 -3.4 hypothetical protein compare
ABZR86_RS17180 -3.2 -11.1 glycosyltransferase compare
ABZR86_RS16800 -3.2 -12.1 FAD-dependent oxidoreductase compare
ABZR86_RS06715 -3.1 -8.0 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS08040 -3.1 -6.0 chorismate synthase compare
ABZR86_RS08710 -3.1 -6.9 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS02815 -3.1 -13.4 asparagine synthase B compare
ABZR86_RS05995 -3.0 -13.3 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS09845 -3.0 -10.6 DUF1631 domain-containing protein compare
ABZR86_RS16795 -3.0 -15.2 glutamate synthase large subunit compare
ABZR86_RS00685 -3.0 -2.2 carbon storage regulator CsrA compare
ABZR86_RS02220 -3.0 -13.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS06720 -2.9 -5.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS15515 -2.9 -5.0 nitrogen regulation protein NR(I) compare
ABZR86_RS14700 -2.9 -5.8 glucose-6-phosphate dehydrogenase compare
ABZR86_RS06725 -2.9 -5.7 histidinol-phosphate transaminase compare
ABZR86_RS19560 -2.9 -4.2 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) compare
ABZR86_RS07180 -2.9 -6.6 RNA polymerase sigma factor RpoE compare
ABZR86_RS14985 -2.9 -6.7 shikimate dehydrogenase compare
ABZR86_RS10830 -2.9 -2.1 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS12070 -2.9 -7.2 anthranilate phosphoribosyltransferase compare
ABZR86_RS06710 -2.8 -6.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS15965 -2.8 -6.6 branched-chain amino acid transaminase compare
ABZR86_RS08340 -2.8 -4.5 adenylosuccinate synthase compare
ABZR86_RS10215 -2.8 -5.7 inositol monophosphatase family protein compare
ABZR86_RS15960 -2.8 -7.2 3-isopropylmalate dehydratase large subunit compare
ABZR86_RS12065 -2.7 -5.3 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS08695 -2.7 -8.5 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
ABZR86_RS08700 -2.7 -4.3 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS10425 -2.7 -3.3 pyrroline-5-carboxylate reductase compare
ABZR86_RS15945 -2.6 -5.5 dihydroxy-acid dehydratase compare
ABZR86_RS15935 -2.6 -9.3 biosynthetic-type acetolactate synthase large subunit compare
ABZR86_RS03540 -2.6 -5.7 bifunctional molybdenum cofactor biosynthesis protein MoaC/MoaB conserved
ABZR86_RS06275 -2.6 -4.9 DUF6165 family protein compare
ABZR86_RS12435 -2.6 -6.4 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS06730 -2.6 -5.1 histidinol dehydrogenase compare
ABZR86_RS06735 -2.6 -4.2 ATP phosphoribosyltransferase compare
ABZR86_RS08715 -2.6 -8.4 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
ABZR86_RS06705 -2.5 -4.2 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS05885 -2.5 -10.7 LysR substrate-binding domain-containing protein compare
ABZR86_RS11570 -2.5 -9.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR86_RS15970 -2.5 -6.7 2-isopropylmalate synthase compare
ABZR86_RS11555 -2.4 -8.8 phosphoenolpyruvate carboxylase compare
ABZR86_RS03855 -2.4 -12.2 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
ABZR86_RS12410 -2.4 -4.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS15980 -2.4 -3.9 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS15020 -2.4 -1.2 DUF484 family protein compare
ABZR86_RS10840 -2.4 -2.4 Holliday junction branch migration protein RuvA compare
ABZR86_RS03535 -2.4 -3.5 GTP 3',8-cyclase MoaA compare
ABZR86_RS08730 -2.4 -7.9 N-acetylornithine carbamoyltransferase compare
ABZR86_RS10715 -2.4 -10.4 serine hydroxymethyltransferase compare
ABZR86_RS15955 -2.3 -5.0 3-isopropylmalate dehydratase small subunit compare
ABZR86_RS02225 -2.3 -4.1 prephenate dehydratase compare
ABZR86_RS15315 -2.3 -10.2 phenylalanine 4-monooxygenase compare
ABZR86_RS18450 -2.3 -4.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS03560 -2.3 -6.5 molybdenum cofactor guanylyltransferase compare
ABZR86_RS20775 -2.3 -5.0 TetR/AcrR family transcriptional regulator compare
ABZR86_RS12180 -2.3 -10.1 anthranilate synthase component I compare
ABZR86_RS06270 -2.2 -4.8 glycosyltransferase family 9 protein compare
ABZR86_RS08010 -2.2 -4.7 phosphoribosylanthranilate isomerase compare
ABZR86_RS03555 -2.2 -10.6 molybdenum cofactor biosynthesis protein MoaE compare
ABZR86_RS13920 -2.2 -9.8 CDP-glycerol glycerophosphotransferase family protein compare
ABZR86_RS13515 -2.2 -5.0 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS19815 -2.2 -10.1 RNA polymerase factor sigma-54 compare
ABZR86_RS15975 -2.2 -7.7 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS19800 -2.2 -7.2 RNase adapter RapZ compare
ABZR86_RS05875 -2.2 -4.3 cysteine synthase A compare
ABZR86_RS06690 -2.2 -3.7 acireductone synthase compare
ABZR86_RS03860 -2.2 -6.4 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
ABZR86_RS06000 -2.2 -5.3 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS01885 -2.2 -1.3 DUF5668 domain-containing protein compare
ABZR86_RS15940 -2.1 -6.4 ketol-acid reductoisomerase compare
ABZR86_RS08680 -2.1 -9.0 glutamate-5-semialdehyde dehydrogenase compare
ABZR86_RS05905 -2.1 -6.6 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABZR86_RS05550 -2.1 -3.1 lipopolysaccharide assembly protein LapB compare
ABZR86_RS08705 -2.1 -9.3 N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (from data) compare
ABZR86_RS15950 -2.1 -5.5 3-isopropylmalate dehydrogenase compare
ABZR86_RS18875 -2.1 -7.8 glycine cleavage system aminomethyltransferase GcvT compare
ABZR86_RS18615 -2.1 -2.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS18780 -2.1 -2.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR86_RS03875 -2.1 -7.1 uroporphyrinogen-III synthase compare
ABZR86_RS14690 -2.1 -4.6 phosphogluconate dehydratase compare
ABZR86_RS03850 -2.0 -11.4 MFS transporter conserved
ABZR86_RS06775 -2.0 -11.1 amidophosphoribosyltransferase compare
ABZR86_RS08355 -2.0 -3.8 FtsH protease activity modulator HflK compare
ABZR86_RS12215 -2.0 -3.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS12780 -2.0 -3.8 pteridine reductase compare
ABZR86_RS05895 -2.0 -9.6 phosphoadenylyl-sulfate reductase compare
ABZR86_RS15640 -1.9 -1.9 orotate phosphoribosyltransferase compare
ABZR86_RS05890 -1.9 -9.9 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase compare
ABZR86_RS13850 -1.9 -5.4 phosphoribosylamine--glycine ligase compare
ABZR86_RS21335 -1.9 -1.2 response regulator transcription factor compare
ABZR86_RS02880 -1.9 -9.1 sulfate ABC transporter substrate-binding protein compare
ABZR86_RS11825 -1.9 -1.8 citrate synthase compare
ABZR86_RS05900 -1.9 -6.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABZR86_RS02895 -1.9 -5.7 ABC transporter ATP-binding protein compare
ABZR86_RS13900 -1.9 -4.7 glycosyltransferase compare
ABZR86_RS02890 -1.9 -4.9 sulfate ABC transporter permease subunit CysW compare
ABZR86_RS10480 -1.9 -2.4 3-dehydroquinate synthase compare
ABZR86_RS09075 -1.9 -1.3 NrsF family protein compare
ABZR86_RS09840 -1.8 -1.1 Trm112 family protein compare
ABZR86_RS03135 -1.8 -1.6 hypothetical protein compare
ABZR86_RS19235 -1.8 -2.7 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS18355 -1.8 -1.6 PepSY domain-containing protein compare
ABZR86_RS17150 -1.8 -9.2 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
ABZR86_RS21020 -1.8 -9.8 ATP-binding protein compare
ABZR86_RS13055 -1.8 -6.5 glucokinase compare
ABZR86_RS18715 -1.8 -5.4 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABZR86_RS12790 -1.8 -4.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
ABZR86_RS02230 -1.8 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS07885 -1.8 -5.6 cation diffusion facilitator family transporter compare
ABZR86_RS07660 -1.7 -4.1 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS12295 -1.7 -0.8 DUF2884 family protein compare
ABZR86_RS02885 -1.7 -6.9 sulfate ABC transporter permease subunit CysT compare
ABZR86_RS02305 -1.7 -0.9 hypothetical protein compare
ABZR86_RS03545 -1.7 -6.4 gephyrin-like molybdotransferase Glp conserved
ABZR86_RS19030 -1.6 -3.9 cystathionine gamma-synthase compare
ABZR86_RS12835 -1.6 -4.2 DedA family protein compare
ABZR86_RS06580 -1.6 -2.2 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS06355 -1.6 -2.5 folate-binding protein YgfZ compare
ABZR86_RS13915 -1.6 -8.8 glycosyltransferase family 2 protein compare
ABZR86_RS21480 -1.6 -4.6 arginase family protein compare
ABZR86_RS07310 -1.6 -4.9 tRNA-Val compare
ABZR86_RS08350 -1.6 -4.3 protease modulator HflC compare
ABZR86_RS19860 -1.6 -7.0 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS08905 -1.6 -7.1 carbonate dehydratase compare
ABZR86_RS13905 -1.6 -6.9 glycosyltransferase family 1 protein compare
ABZR86_RS03865 -1.5 -7.2 Nitrate reductase (EC 1.7.99.4) (from data) conserved
ABZR86_RS06590 -1.5 -1.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS13910 -1.5 -8.8 glycosyltransferase compare
ABZR86_RS01095 -1.5 -8.5 elongation factor G compare
ABZR86_RS02545 -1.5 -2.6 Ref family recombination enhancement nuclease compare
ABZR86_RS18655 -1.5 -5.1 transketolase compare
ABZR86_RS09485 -1.5 -1.2 SUF system Fe-S cluster assembly regulator compare
ABZR86_RS01565 -1.5 -1.8 hypothetical protein compare
ABZR86_RS08865 -1.4 -1.4 30S ribosomal protein S18 compare
ABZR86_RS02310 -1.4 -2.1 hypothetical protein compare
ABZR86_RS00570 -1.4 -3.4 acetoacetyl-CoA reductase compare
ABZR86_RS18730 -1.4 -4.4 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR86_RS08305 -1.4 -9.2 aminomethyl-transferring glycine dehydrogenase compare
ABZR86_RS08685 -1.4 -3.0 glutamate 5-kinase compare
ABZR86_RS18360 -1.4 -6.8 response regulator transcription factor compare
ABZR86_RS13880 -1.4 -1.2 peptide deformylase compare
ABZR86_RS05255 -1.3 -1.8 nuclear transport factor 2 family protein compare
ABZR86_RS14870 -1.3 -1.0 AAA family ATPase compare
ABZR86_RS12280 -1.3 -1.6 dihydrolipoyl dehydrogenase compare
ABZR86_RS19225 -1.3 -2.4 site-specific tyrosine recombinase XerD compare
ABZR86_RS18045 -1.3 -1.9 response regulator transcription factor compare
ABZR86_RS03575 -1.3 -8.5 ABC transporter permease subunit compare
ABZR86_RS07995 -1.3 -4.7 tryptophan synthase subunit alpha compare
ABZR86_RS07585 -1.3 -4.7 homocysteine S-methyltransferase family protein compare
ABZR86_RS00800 -1.3 -1.7 tRNA-Glu compare
ABZR86_RS09430 -1.3 -3.1 non-heme iron oxygenase ferredoxin subunit compare
ABZR86_RS21435 -1.3 -3.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABZR86_RS14165 -1.3 -1.2 hypothetical protein compare
ABZR86_RS13710 -1.3 -1.3 hypothetical protein compare
ABZR86_RS12045 -1.3 -7.3 cAMP-activated global transcriptional regulator CRP compare
ABZR86_RS00830 -1.3 -7.7 glucose-6-phosphate isomerase compare
ABZR86_RS05545 -1.3 -5.4 glycosyltransferase family 4 protein compare
ABZR86_RS15330 -1.3 -5.1 TetR/AcrR family transcriptional regulator compare
ABZR86_RS07590 -1.2 -7.9 methionine synthase compare
ABZR86_RS15985 -1.2 -4.1 homoserine dehydrogenase compare
ABZR86_RS18880 -1.2 -6.1 glycine cleavage system protein GcvH compare
ABZR86_RS05860 -1.2 -2.1 adenylosuccinate lyase compare
ABZR86_RS19805 -1.2 -3.1 HPr(Ser) kinase/phosphatase compare
ABZR86_RS07320 -1.2 -8.3 endopeptidase La compare
ABZR86_RS13245 -1.2 -7.9 DEAD/DEAH box helicase compare
ABZR86_RS17880 -1.2 -2.0 hypothetical protein compare
ABZR86_RS06190 -1.2 -1.9 YceD family protein compare
ABZR86_RS03570 -1.2 -7.2 extracellular solute-binding protein compare
ABZR86_RS20595 -1.2 -1.7 DUF6587 family protein compare
ABZR86_RS15115 -1.2 -4.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR86_RS11975 -1.2 -0.9 UPF0149 family protein compare
ABZR86_RS12605 -1.2 -1.8 thioredoxin TrxA compare
ABZR86_RS13465 -1.1 -1.2 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB compare
ABZR86_RS18775 -1.1 -1.0 nucleotidyltransferase family protein compare
ABZR86_RS03580 -1.1 -3.3 ABC transporter ATP-binding protein compare
ABZR86_RS21345 -1.1 -6.5 GNAT family N-acetyltransferase compare
ABZR86_RS10205 -1.1 -3.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS00660 -1.1 -2.3 recombinase RecA compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source Sodium nitrate in Dyella japonica UNC79MFTsu3.2

For nitrogen source Sodium nitrate across organisms