Experiment set3IT095 for Pseudomonas fluorescens SBW25-INTG

Compare to:

no extra nitrogen source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS03645 -6.0 -4.1 tetratricopeptide repeat protein compare
PFLU_RS01645 -5.7 -6.8 S41 family peptidase compare
PFLU_RS14550 -4.8 -5.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS28645 -4.6 -18.1 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS04835 -4.1 -1.8 hypothetical protein compare
PFLU_RS28695 -3.9 -7.5 phosphoglycerate dehydrogenase compare
PFLU_RS24125 -3.8 -4.6 cold-shock protein compare
PFLU_RS23920 -3.7 -4.4 septation protein A compare
PFLU_RS26545 -3.7 -12.6 sel1 repeat family protein compare
PFLU_RS23590 -3.5 -3.8 gluconokinase compare
PFLU_RS06320 -3.4 -4.6 OmpH family outer membrane protein compare
PFLU_RS22595 -3.3 -3.2 OmpA family protein compare
PFLU_RS23065 -3.3 -10.4 phosphate acyltransferase PlsX compare
PFLU_RS18505 -3.1 -11.3 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS01685 -3.1 -5.6 nitrogen regulation protein NR(I) compare
PFLU_RS29880 -3.1 -13.9 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS24485 -3.1 -11.7 hypothetical protein compare
PFLU_RS25760 -3.1 -13.4 glucose-6-phosphate isomerase compare
PFLU_RS09055 -3.0 -2.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS12975 -2.8 -6.1 DUF934 domain-containing protein compare
PFLU_RS04070 -2.8 -5.6 peptide chain release factor 3 compare
PFLU_RS29875 -2.8 -15.4 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS02490 -2.8 -12.3 phosphoserine phosphatase SerB compare
PFLU_RS28535 -2.7 -15.2 dihydroxy-acid dehydratase compare
PFLU_RS22105 -2.7 -6.2 cysteine synthase CysM compare
PFLU_RS13485 -2.7 -15.2 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS01690 -2.7 -8.5 nitrogen regulation protein NR(II) compare
PFLU_RS22740 -2.7 -5.9 phosphoadenylyl-sulfate reductase compare
PFLU_RS25735 -2.6 -7.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS29885 -2.6 -11.1 LysR family transcriptional regulator compare
PFLU_RS22250 -2.6 -3.5 hypothetical protein compare
PFLU_RS22095 -2.6 -17.9 GTP diphosphokinase compare
PFLU_RS02365 -2.4 -12.8 glycosyltransferase compare
PFLU_RS07695 -2.4 -3.9 beta-N-acetylhexosaminidase compare
PFLU_RS24085 -2.4 -2.3 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS00415 -2.4 -1.6 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS24330 -2.4 -7.1 phosphogluconate dehydratase compare
PFLU_RS08505 -2.3 -7.7 protease HtpX compare
PFLU_RS02180 -2.2 -1.7 thioredoxin TrxC compare
PFLU_RS12980 -2.2 -9.5 nitrite/sulfite reductase compare
PFLU_RS26595 -2.1 -1.5 lipoprotein compare
PFLU_RS19175 -2.1 -8.7 trigger factor compare
PFLU_RS13540 -2.1 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS00535 -2.1 -2.9 DUF1127 domain-containing protein compare
PFLU_RS25360 -2.1 -7.5 glutamate 5-kinase compare
PFLU_RS18645 -2.1 -2.8 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS23070 -2.1 -1.5 50S ribosomal protein L32 compare
PFLU_RS01605 -2.1 -7.7 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS18530 -2.1 -4.4 DNA translocase FtsK compare
PFLU_RS01620 -2.1 -8.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS23585 -2.0 -7.6 GntP family permease compare
PFLU_RS00180 -2.0 -7.5 tryptophan synthase subunit beta compare
PFLU_RS24765 -2.0 -14.7 2-isopropylmalate synthase compare
PFLU_RS06265 -2.0 -14.1 [protein-PII] uridylyltransferase compare
PFLU_RS20580 -1.9 -10.4 3-isopropylmalate dehydratase large subunit compare
PFLU_RS21495 -1.9 -3.3 TlpA family protein disulfide reductase compare
PFLU_RS20565 -1.9 -11.6 3-isopropylmalate dehydrogenase compare
PFLU_RS26290 -1.9 -1.2 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS01965 -1.9 -1.8 ATP-dependent protease subunit HslV compare
PFLU_RS24095 -1.9 -2.2 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS26770 -1.9 -9.9 DedA family protein compare
PFLU_RS23305 -1.9 -9.2 arginine N-succinyltransferase compare
PFLU_RS25640 -1.9 -10.1 ketol-acid reductoisomerase compare
PFLU_RS18395 -1.9 -1.7 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS15410 -1.9 -2.4 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS20575 -1.8 -5.0 3-isopropylmalate dehydratase small subunit compare
PFLU_RS09980 -1.8 -12.5 peptidase S41 compare
PFLU_RS04415 -1.8 -3.2 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS28655 -1.8 -10.6 HAD family hydrolase compare
PFLU_RS25920 -1.8 -2.3 outer membrane protein assembly factor BamE compare
PFLU_RS05630 -1.7 -1.7 amino acid ABC transporter ATP-binding protein compare
PFLU_RS04325 -1.7 -11.2 ribonuclease G compare
PFLU_RS30345 -1.7 -2.6 DUF2559 family protein compare
PFLU_RS29515 -1.7 -8.2 RidA family protein compare
PFLU_RS18670 -1.7 -1.9 NADH-quinone oxidoreductase subunit M compare
PFLU_RS00210 -1.7 -1.2 OsmC family protein compare
PFLU_RS16710 -1.7 -2.7 nitrite reductase small subunit NirD compare
PFLU_RS21300 -1.7 -5.1 cysteine hydrolase compare
PFLU_RS16715 -1.7 -9.4 nitrite reductase large subunit conserved
PFLU_RS27365 -1.7 -6.7 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS04465 -1.7 -7.2 ATP phosphoribosyltransferase compare
PFLU_RS01900 -1.7 -6.0 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS28965 -1.7 -7.1 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS28385 -1.6 -8.6 homoserine O-acetyltransferase compare
PFLU_RS04430 -1.6 -7.0 ATP-binding cassette domain-containing protein compare
PFLU_RS04945 -1.6 -2.6 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS18735 -1.6 -1.7 hypothetical protein compare
PFLU_RS20510 -1.6 -9.5 O-succinylhomoserine sulfhydrylase compare
PFLU_RS27620 -1.6 -11.3 acyl-CoA dehydrogenase compare
PFLU_RS04435 -1.6 -5.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS29490 -1.6 -7.6 ribonuclease PH compare
PFLU_RS01610 -1.6 -8.3 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS19165 -1.6 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS27910 -1.6 -1.6 helix-turn-helix transcriptional regulator compare
PFLU_RS21665 -1.6 -5.9 MinD/ParA family protein compare
PFLU_RS11505 -1.6 -2.4 ABC transporter substrate-binding protein compare
PFLU_RS25750 -1.5 -4.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS28390 -1.5 -6.7 methionine biosynthesis protein MetW compare
PFLU_RS12800 -1.5 -2.2 amino acid ABC transporter ATP-binding protein compare
PFLU_RS03055 -1.5 -2.5 methyl-accepting chemotaxis protein compare
PFLU_RS00175 -1.5 -7.1 tryptophan synthase subunit alpha compare
PFLU_RS02980 -1.5 -1.4 precorrin-8X methylmutase compare
PFLU_RS25730 -1.5 -10.4 PAS domain S-box protein compare
PFLU_RS28725 -1.5 -8.0 DUF2059 domain-containing protein compare
PFLU_RS04385 -1.5 -7.1 RNase adapter RapZ compare
PFLU_RS27650 -1.5 -9.4 biotin synthase BioB compare
PFLU_RS18420 -1.5 -2.3 hypothetical protein compare
PFLU_RS05885 -1.5 -4.1 recombinase RecA compare
PFLU_RS23310 -1.5 -7.3 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS26735 -1.5 -6.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS03610 -1.5 -5.3 redox-regulated ATPase YchF compare
PFLU_RS18615 -1.5 -2.2 NADH-quinone oxidoreductase subunit A compare
PFLU_RS30165 -1.4 -6.7 ParA family protein compare
PFLU_RS24090 -1.4 -2.9 Holliday junction branch migration protein RuvA compare
PFLU_RS24205 -1.4 -1.3 DNA binding protein compare
PFLU_RS03555 -1.4 -1.1 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS20540 -1.4 -7.8 phosphoribosylanthranilate isomerase compare
PFLU_RS28690 -1.4 -7.4 FAD-binding oxidoreductase compare
PFLU_RS08160 -1.4 -5.7 sugar transferase compare
PFLU_RS19985 -1.4 -2.9 iron chelate uptake ABC transporter family permease subunit compare
PFLU_RS03770 -1.4 -8.0 sulfate adenylyltransferase subunit CysN compare
PFLU_RS02590 -1.4 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20520 -1.4 -7.0 colicin V production protein CvpA compare
PFLU_RS04470 -1.4 -7.4 histidinol dehydrogenase compare
PFLU_RS07785 -1.4 -8.2 VacJ family lipoprotein compare
PFLU_RS01390 -1.4 -4.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS01615 -1.4 -3.5 DUF2164 domain-containing protein compare
PFLU_RS18635 -1.4 -2.8 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS28165 -1.4 -8.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS28650 -1.4 -5.0 RNA pyrophosphohydrolase compare
PFLU_RS05250 -1.3 -3.9 elongation factor 4 compare
PFLU_RS27370 -1.3 -6.9 anthranilate phosphoribosyltransferase compare
PFLU_RS07650 -1.3 -8.9 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS14820 -1.3 -3.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS31100 -1.3 -3.2 preprotein translocase subunit SecG compare
PFLU_RS02860 -1.3 -2.0 urease subunit beta compare
PFLU_RS14805 -1.3 -2.0 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS01005 -1.3 -1.5 ABC transporter ATP-binding protein compare
PFLU_RS24670 -1.3 -1.7 HigA family addiction module antidote protein compare
PFLU_RS25225 -1.3 -6.6 disulfide bond formation protein B compare
PFLU_RS20690 -1.3 -3.3 hypothetical protein compare
PFLU_RS17950 -1.3 -2.0 hypothetical protein compare
PFLU_RS11885 -1.3 -1.4 type II secretion system protein M compare
PFLU_RS10120 -1.3 -3.3 hypothetical protein compare
PFLU_RS26905 -1.3 -6.3 transcriptional regulator NrdR compare
PFLU_RS25740 -1.3 -4.2 polynucleotide adenylyltransferase PcnB compare
PFLU_RS03400 -1.2 -2.3 hypothetical protein compare
PFLU_RS08620 -1.2 -3.7 molybdenum cofactor guanylyltransferase MobA compare
PFLU_RS26640 -1.2 -7.8 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS09720 -1.2 -1.8 single-stranded DNA-binding protein compare
PFLU_RS25755 -1.2 -3.3 pantoate--beta-alanine ligase compare
PFLU_RS20515 -1.2 -3.7 amidophosphoribosyltransferase compare
PFLU_RS17580 -1.2 -1.9 repressor LexA compare
PFLU_RS24805 -1.2 -4.4 helix-turn-helix domain-containing protein compare
PFLU_RS21995 -1.2 -2.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS23235 -1.2 -3.7 Arc family DNA-binding protein compare
PFLU_RS00465 -1.2 -7.3 spore maturation protein compare
PFLU_RS01895 -1.2 -3.9 phosphoribosyl-ATP diphosphatase compare
PFLU_RS22395 -1.2 -3.3 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS02130 -1.2 -2.6 glycosyl transferase compare
PFLU_RS01485 -1.2 -7.4 cellulase compare
PFLU_RS15165 -1.2 -2.0 RidA family protein compare
PFLU_RS02460 -1.2 -6.6 alpha/beta fold hydrolase compare
PFLU_RS29275 -1.2 -4.2 DUF484 family protein compare
PFLU_RS28895 -1.2 -1.6 DUF2388 domain-containing protein compare
PFLU_RS22605 -1.1 -5.2 mechanosensitive ion channel compare
PFLU_RS27645 -1.1 -6.9 8-amino-7-oxononanoate synthase compare
PFLU_RS22025 -1.1 -7.5 cobyrinate a,c-diamide synthase compare
PFLU_RS10765 -1.1 -5.9 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS27690 -1.1 -0.7 response regulator compare
PFLU_RS08675 -1.1 -1.0 DsbE family thiol:disulfide interchange protein compare
PFLU_RS19720 -1.1 -1.9 hypothetical protein compare
PFLU_RS28195 -1.1 -7.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS03765 -1.1 -5.8 sulfate adenylyltransferase subunit CysD compare
PFLU_RS22575 -1.1 -4.1 ANTAR domain-containing protein conserved
PFLU_RS18620 -1.1 -3.3 NADH-quinone oxidoreductase subunit B compare
PFLU_RS06855 -1.1 -1.7 helix-turn-helix transcriptional regulator compare
PFLU_RS15970 -1.1 -2.6 DUF861 domain-containing protein compare
PFLU_RS05200 -1.1 -3.4 glutaredoxin family protein compare
PFLU_RS24560 -1.1 -4.8 site-specific tyrosine recombinase XerD compare
PFLU_RS04440 -1.1 -6.2 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS07670 -1.1 -4.6 hypothetical protein compare
PFLU_RS18675 -1.1 -2.0 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS13795 -1.1 -1.8 hypothetical protein compare
PFLU_RS01650 -1.1 -5.1 murein hydrolase activator EnvC compare
PFLU_RS19915 -1.1 -1.4 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS06555 -1.1 -5.5 OmpA family protein compare
PFLU_RS24785 -1.1 -6.3 outer membrane protein assembly factor BamB compare
PFLU_RS27635 -1.1 -4.8 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS16935 -1.1 -1.4 CoA ester lyase compare
PFLU_RS27630 -1.1 -3.4 dethiobiotin synthase compare
PFLU_RS14830 -1.1 -4.2 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PFLU_RS02975 -1.0 -4.7 precorrin-3B synthase compare
PFLU_RS20345 -1.0 -2.2 hypothetical protein compare
PFLU_RS13760 -1.0 -1.7 hypothetical protein compare
PFLU_RS29900 -1.0 -6.6 DNA helicase II compare
PFLU_RS07640 -1.0 -5.5 universal stress protein compare
PFLU_RS14195 -1.0 -2.0 hypothetical protein compare
PFLU_RS04715 -1.0 -4.1 D-alanine--D-alanine ligase compare
PFLU_RS05610 -1.0 -4.0 sigma-54-dependent Fis family transcriptional regulator compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas fluorescens SBW25-INTG

For nitrogen source D-Glucose across organisms