Experiment set3IT095 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Zinc sulfate heptahydrate 1.25 mM

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_1381 +0.7 4.7 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_1380 +0.7 5.8 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_4120 +0.7 1.6 Stress responsive A/B Barrel Domain compare
Ga0059261_3783 +0.6 3.7 hypothetical protein compare
Ga0059261_4122 +0.6 2.1 Gluconate 2-dehydrogenase subunit 3 compare
Ga0059261_0161 +0.6 1.9 molybdopterin converting factor, subunit 1, non-archaeal compare
Ga0059261_2471 +0.6 1.5 hypothetical protein compare
Ga0059261_1774 +0.6 2.2 hypothetical protein compare
Ga0059261_3885 +0.6 2.3 K+-transporting ATPase, C subunit compare
Ga0059261_1092 +0.6 2.3 flagellar motor switch protein FliN compare
Ga0059261_0045 +0.6 2.4 hypothetical protein compare
Ga0059261_3006 +0.6 1.7 hypothetical protein compare
Ga0059261_4046 +0.6 1.2 Response regulator receiver domain compare
Ga0059261_0493 +0.6 1.5 hypothetical protein compare
Ga0059261_3056 +0.5 2.0 Protein of unknown function (DUF2958) compare
Ga0059261_1546 +0.5 4.2 MerC mercury resistance protein compare
Ga0059261_3759 +0.5 2.0 hypothetical protein compare
Ga0059261_3810 +0.5 2.6 Transcriptional regulators compare
Ga0059261_3491 +0.5 3.1 hypothetical protein compare
Ga0059261_0266 +0.5 1.2 hypothetical protein compare
Ga0059261_1759 +0.5 2.0 Phosphoadenosine phosphosulfate reductase family compare
Ga0059261_3356 +0.5 1.1 hypothetical protein compare
Ga0059261_1443 +0.5 4.0 Hemolysins and related proteins containing CBS domains compare
Ga0059261_2019 +0.5 2.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_1991 +0.4 2.2 hypothetical protein compare
Ga0059261_0638 +0.4 3.7 type I secretion outer membrane protein, TolC family compare
Ga0059261_1939 +0.4 1.0 putative phosphoesterase compare
Ga0059261_0229 +0.4 2.4 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Ga0059261_1181 +0.4 1.8 hypothetical protein compare
Ga0059261_3920 +0.4 2.2 phosphonoacetaldehyde hydrolase (EC 3.11.1.1) compare
Ga0059261_2283 +0.4 2.8 Predicted membrane protein compare
Ga0059261_0357 +0.4 1.7 hypothetical protein compare
Ga0059261_0525 +0.4 1.5 Transcriptional regulator compare
Ga0059261_0802 +0.4 1.4 protein-export chaperone SecB compare
Ga0059261_4185 +0.4 1.0 hypothetical protein compare
Ga0059261_2985 +0.4 2.1 FecR family protein compare
Ga0059261_0223 +0.4 1.5 Peptidase inhibitor I78 family compare
Ga0059261_0846 +0.4 2.2 Zn-dependent alcohol dehydrogenases, class III compare
Ga0059261_4189 +0.4 2.3 hypothetical protein compare
Ga0059261_0887 +0.4 1.6 Predicted transcriptional regulators compare
Ga0059261_2413 +0.4 1.1 hypothetical protein compare
Ga0059261_3064 +0.4 1.6 hypothetical protein compare
Ga0059261_3467 +0.4 1.9 Domain of unknown function (DUF4262) compare
Ga0059261_3602 +0.4 1.5 Glutaredoxin, GrxC family compare
Ga0059261_2987 +0.4 1.0 hypothetical protein compare
Ga0059261_3873 +0.3 2.3 HlyD family secretion protein compare
Ga0059261_1015 +0.3 2.3 Predicted phosphatases compare
Ga0059261_1174 +0.3 1.9 Putative transposase of IS4/5 family (DUF4096) compare
Ga0059261_1292 +0.3 1.3 hypothetical protein compare
Ga0059261_3027 +0.3 1.7 Predicted transcriptional regulators compare
Ga0059261_2570 +0.3 1.2 Type IV secretory pathway, TrbD component compare
Ga0059261_0675 +0.3 1.3 hypothetical protein compare
Ga0059261_1406 +0.3 1.1 Acetyltransferase (GNAT) family compare
Ga0059261_1407 +0.3 2.7 23S rRNA (adenine(2503)-C(2))-methyltransferase compare
Ga0059261_2215 +0.3 1.0 Thiamine monophosphate synthase compare
Ga0059261_0155 +0.3 2.5 peroxiredoxin compare
Ga0059261_0344 +0.3 1.4 Molecular chaperone (small heat shock protein) compare
Ga0059261_2020 +0.3 2.6 Glycosyltransferase compare
Ga0059261_1261 +0.3 1.3 hypothetical protein compare
Ga0059261_1438 +0.3 1.8 Membrane proteins related to metalloendopeptidases compare
Ga0059261_0770 +0.3 0.9 hypothetical protein compare
Ga0059261_1915 +0.3 2.3 transcriptional regulator, MucR family compare
Ga0059261_2014 +0.3 2.6 Predicted permease compare
Ga0059261_3090 +0.3 2.3 Uncharacterized proteins, LmbE homologs compare
Ga0059261_3280 +0.3 0.8 Uncharacterized conserved protein compare
Ga0059261_3815 +0.3 1.8 hypothetical protein compare
Ga0059261_3649 +0.3 1.9 hypothetical protein compare
Ga0059261_4217 +0.3 0.6 hypothetical protein compare
Ga0059261_1791 +0.3 0.8 hypothetical protein compare
Ga0059261_2547 +0.3 0.6 tRNA compare
Ga0059261_3359 +0.3 1.3 Zn-dependent hydrolases, including glyoxylases compare
Ga0059261_1707 +0.3 0.9 hypothetical protein compare
Ga0059261_0891 +0.3 1.2 hypothetical protein compare
Ga0059261_4007 +0.3 0.8 Transcriptional regulators compare
Ga0059261_0102 +0.3 2.2 endopeptidase La compare
Ga0059261_3026 +0.3 1.1 Cation efflux family compare
Ga0059261_2349 +0.3 1.1 hypothetical protein compare
Ga0059261_0022 +0.3 1.5 EF hand compare
Ga0059261_0237 +0.3 1.3 phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Ga0059261_0472 +0.3 1.1 Predicted metal-binding protein compare
Ga0059261_3368 +0.3 1.3 Predicted transcriptional regulator compare
Ga0059261_4155 +0.3 2.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_4184 +0.3 1.8 exosortase A system-associated hydrolase 1 compare
Ga0059261_1191 +0.3 1.6 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_3604 +0.3 1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_0654 +0.3 1.2 Chemotaxis signal transduction protein compare
Ga0059261_3971 +0.3 0.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_2929 +0.3 0.7 oxygen-dependent methionine synthase, methyltransferase component MesD (from data) compare
Ga0059261_4143 +0.3 1.2 hypothetical protein compare
Ga0059261_3153 +0.3 0.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_2746 +0.3 1.4 Predicted sugar nucleotidyltransferases compare
Ga0059261_3052 +0.3 1.5 Uncharacterized conserved protein (DUF2285) compare
Ga0059261_4025 +0.3 0.5 Nucleotidyl transferase compare
Ga0059261_0230 +0.3 1.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_0351 +0.3 1.7 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
Ga0059261_0733 +0.3 1.5 Cell division protein ZapA compare
Ga0059261_3009 +0.3 1.5 Acetyltransferase (GNAT) domain compare
Ga0059261_0225 +0.3 2.3 polyphosphate kinase 1 compare
Ga0059261_3366 +0.3 1.0 hypothetical protein compare
Ga0059261_1799 +0.3 1.1 Uncharacterized protein conserved in bacteria (DUF2059) compare
Ga0059261_1878 +0.3 1.7 RND family efflux transporter, MFP subunit compare
Ga0059261_0572 +0.3 1.6 Transcriptional regulator compare
Ga0059261_2088 +0.3 1.2 Flagellar motor component compare
Ga0059261_0056 +0.3 1.5 Predicted transcriptional regulator compare
Ga0059261_1999 +0.3 1.5 threonine synthase compare
Ga0059261_4171 +0.3 1.1 redox-sensitive transcriptional activator SoxR compare
Ga0059261_0340 +0.3 0.8 Bacterial protein of unknown function (DUF937) compare
Ga0059261_1056 +0.3 1.6 Etoposide-induced protein 2 compare
Ga0059261_4149 +0.3 1.4 psp operon transcriptional activator PspF compare
Ga0059261_2935 +0.3 1.7 hypothetical protein compare
Ga0059261_2648 +0.2 0.9 Transcriptional regulators compare
Ga0059261_2922 +0.2 1.7 DNA binding domain, excisionase family compare
Ga0059261_1713 +0.2 1.3 hypothetical protein compare
Ga0059261_0433 +0.2 0.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_0220 +0.2 1.8 L-serine dehydratase, iron-sulfur-dependent, single chain form compare
Ga0059261_1217 +0.2 1.1 MobA/MobL family compare
Ga0059261_1169 +0.2 1.2 hypothetical protein compare
Ga0059261_4225 +0.2 1.0 3-isopropylmalate dehydratase, small subunit compare
Ga0059261_3243 +0.2 1.7 Flp pilus assembly protein, secretin CpaC compare
Ga0059261_0360 +0.2 1.4 Putative NADH-flavin reductase compare
Ga0059261_1049 +0.2 1.3 PEP-CTERM protein-sorting domain compare
Ga0059261_0925 +0.2 1.7 Phosphoglycerate dehydrogenase and related dehydrogenases compare
Ga0059261_0431 +0.2 1.8 Domain of unknown function (DUF305) compare
Ga0059261_1272 +0.2 1.0 TIGR04222 domain compare
Ga0059261_2188 +0.2 0.9 Uncharacterized conserved protein compare
Ga0059261_3526 +0.2 1.7 hemimethylated DNA binding domain compare
Ga0059261_2581 +0.2 1.4 Uncharacterized conserved protein (DUF2285) compare
Ga0059261_2907 +0.2 1.0 Acyl-CoA dehydrogenases compare
Ga0059261_0992 +0.2 1.2 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Ga0059261_3566 +0.2 1.0 hypothetical protein compare
Ga0059261_2825 +0.2 1.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_1035 +0.2 0.6 hypothetical protein compare
Ga0059261_3536 +0.2 1.0 hypothetical protein compare
Ga0059261_0671 +0.2 0.9 Uncharacterized conserved protein compare
Ga0059261_4124 +0.2 1.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Ga0059261_3969 +0.2 1.0 Serine hydrolase compare
Ga0059261_2361 +0.2 1.1 Staphylococcal nuclease homologue compare
Ga0059261_3838 +0.2 1.3 Hemerythrin HHE cation binding domain compare
Ga0059261_2528 +0.2 1.3 Uncharacterized conserved protein compare
Ga0059261_1837 +0.2 0.8 Staphylococcal nuclease homologue compare
Ga0059261_3784 +0.2 1.8 DNA mismatch repair protein MutS compare
Ga0059261_3268 +0.2 1.3 Uncharacterized conserved protein compare
Ga0059261_0621 +0.2 1.1 cob(I)yrinic acid a,c-diamide adenosyltransferase (EC 2.5.1.17) compare
Ga0059261_1840 +0.2 1.5 hypothetical protein compare
Ga0059261_4118 +0.2 1.7 Glycerophosphoryl diester phosphodiesterase compare
Ga0059261_0929 +0.2 1.1 anthranilate phosphoribosyltransferase compare
Ga0059261_3303 +0.2 1.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Ga0059261_2236 +0.2 1.6 hypothetical protein compare
Ga0059261_2118 +0.2 1.5 flagellar motor stator protein MotA compare
Ga0059261_3807 +0.2 1.3 Uncharacterized conserved protein compare
Ga0059261_1467 +0.2 1.9 Long-chain acyl-CoA synthetases (AMP-forming) compare
Ga0059261_2847 +0.2 1.4 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_1311 +0.2 0.7 Nitroreductase compare
Ga0059261_1610 +0.2 1.4 CBS domain/Transporter associated domain compare
Ga0059261_2053 +0.2 1.6 Mg2+ and Co2+ transporters compare
Ga0059261_1197 +0.2 1.0 hypothetical protein compare
Ga0059261_2368 +0.2 0.8 Phage baseplate assembly protein W compare
Ga0059261_3640 +0.2 1.4 Uncharacterized protein conserved in bacteria (DUF2063) compare
Ga0059261_0444 +0.2 0.9 Heavy-metal resistance compare
Ga0059261_2451 +0.2 1.4 Predicted acetyltransferase compare
Ga0059261_3395 +0.2 0.7 hypothetical protein compare
Ga0059261_3100 +0.2 1.6 Sugar transferases involved in lipopolysaccharide synthesis compare
Ga0059261_1527 +0.2 0.5 hypothetical protein compare
Ga0059261_2158 +0.2 1.5 Transcriptional regulatory protein, C terminal compare
Ga0059261_0734 +0.2 1.4 RNA compare
Ga0059261_1851 +0.2 1.5 RND family efflux transporter, MFP subunit compare
Ga0059261_0251 +0.2 1.6 hypothetical protein compare
Ga0059261_0609 +0.2 0.7 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Ga0059261_3308 +0.2 0.8 Uncharacterized conserved protein compare
Ga0059261_1122 +0.2 0.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Ga0059261_0030 +0.2 1.2 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Ga0059261_2715 +0.2 0.9 hypothetical protein compare
Ga0059261_0931 +0.2 0.7 molybdenum cofactor biosynthesis protein MoaC compare
Ga0059261_0402 +0.2 1.5 Uncharacterized conserved protein compare
Ga0059261_2782 +0.2 1.6 hypothetical protein compare
Ga0059261_2378 +0.2 0.7 phage virion morphogenesis (putative tail completion) protein compare
Ga0059261_4224 +0.2 0.4 hypothetical protein compare
Ga0059261_2875 +0.2 1.3 Transcriptional regulators compare
Ga0059261_2355 +0.2 1.2 Ogr/Delta-like zinc finger compare
Ga0059261_1214 +0.2 0.5 hypothetical protein compare
Ga0059261_0607 +0.2 1.5 hypothetical protein compare
Ga0059261_2654 +0.2 1.3 Ribulose 1,5-bisphosphate carboxylase, large subunit compare
Ga0059261_0735 +0.2 1.0 5,10-methenyltetrahydrofolate synthetase compare
Ga0059261_2030 +0.2 1.5 Peroxiredoxin compare
Ga0059261_3261 +0.2 1.4 Protein of unknown function (DUF938) compare
Ga0059261_1196 +0.2 0.9 hypothetical protein compare
Ga0059261_3825 +0.2 1.0 thiol reductant ABC exporter, CydD subunit compare
Ga0059261_2419 +0.2 1.5 Glutathione S-transferase compare
Ga0059261_1304 +0.2 1.5 membrane protein, MarC family compare
Ga0059261_1608 +0.2 1.6 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Ga0059261_3440 +0.2 0.4 hypothetical protein compare
Ga0059261_1531 +0.2 1.1 hypothetical protein compare
Ga0059261_2309 +0.2 1.1 transcriptional regulator, LacI family compare
Ga0059261_3236 +0.2 1.7 pyruvate phosphate dikinase (EC 2.7.9.1) compare
Ga0059261_1109 +0.2 0.9 Flagellar biosynthesis protein, FliO compare
Ga0059261_3803 +0.2 1.1 RND family efflux transporter, MFP subunit compare
Ga0059261_0302 +0.2 1.4 hypothetical protein compare
Ga0059261_1968 +0.2 1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_0449 +0.2 0.9 Uncharacterized protein, homolog of Cu resistance protein CopC compare
Ga0059261_2736 +0.2 1.2 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress Zinc sulfate heptahydrate in Sphingomonas koreensis DSMZ 15582

For stress Zinc sulfate heptahydrate across organisms