Experiment set3IT094 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with D-Cycloserine 0.1 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_09315 -4.4 -10.3 LysR family transcriptional regulator compare
AO353_22685 -3.8 -3.7 peroxidase compare
AO353_14220 -3.8 -2.6 ribosomal large subunit pseudouridine synthase D compare
AO353_10930 -3.7 -6.2 DNA polymerase I compare
AO353_16805 -3.1 -6.4 recombinase RecA compare
AO353_03590 -3.0 -4.5 crossover junction endodeoxyribonuclease RuvC compare
AO353_03580 -2.9 -4.0 ATP-dependent DNA helicase RuvB compare
AO353_06040 -2.9 -2.8 exodeoxyribonuclease V subunit alpha compare
AO353_09320 -2.8 -10.3 ATP-dependent DNA helicase RecG compare
AO353_00310 -2.7 -10.1 transaldolase compare
AO353_18540 -2.5 -3.4 pseudouridine synthase compare
AO353_09240 -2.5 -4.4 acetylglutamate kinase compare
AO353_11850 -2.4 -5.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_10495 -2.4 -4.2 serine hydroxymethyltransferase compare
AO353_04490 -2.3 -10.6 murein transglycosylase compare
AO353_12500 -2.3 -2.6 shikimate kinase compare
AO353_07355 -2.2 -5.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_15460 -2.2 -8.2 cytochrome o ubiquinol oxidase subunit III compare
AO353_11165 -2.1 -10.1 hypothetical protein compare
AO353_07155 -2.1 -7.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_10510 -2.0 -2.4 benzoate transporter compare
AO353_00825 -2.0 -4.5 porin compare
AO353_09000 -1.9 -5.7 argininosuccinate lyase compare
AO353_02070 -1.9 -7.4 prephenate dehydratase compare
AO353_04500 -1.9 -3.0 DNA repair protein RecO compare
AO353_15455 -1.8 -11.9 cytochrome o ubiquinol oxidase subunit I compare
AO353_00430 -1.8 -4.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_10455 -1.8 -2.8 tRNA modification GTPase MnmE compare
AO353_10445 -1.8 -2.6 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_06050 -1.7 -6.6 exodeoxyribonuclease V subunit gamma compare
AO353_21625 -1.7 -3.1 Fe/S biogenesis protein NfuA compare
AO353_16940 -1.7 -5.4 deoxycytidine triphosphate deaminase compare
AO353_11730 -1.7 -8.8 glutamate--cysteine ligase compare
AO353_29215 -1.7 -2.8 alpha/beta hydrolase compare
AO353_00495 -1.7 -2.2 DNA topoisomerase I compare
AO353_08980 -1.6 -3.6 heme biosynthesis operon protein HemX compare
AO353_03795 -1.6 -4.4 fumarate hydratase compare
AO353_20565 -1.6 -2.4 tRNA-Ala compare
AO353_02250 -1.6 -3.7 chorismate synthase compare
AO353_03615 -1.6 -3.3 cold-shock protein compare
AO353_11770 -1.6 -2.3 molecular chaperone Hsp33 compare
AO353_06850 -1.6 -4.6 MFS transporter compare
AO353_05550 -1.6 -5.5 pseudouridine synthase compare
AO353_10055 -1.6 -10.0 DNA helicase II compare
AO353_12115 -1.6 -2.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_20185 -1.6 -6.1 DNA-binding protein compare
AO353_04565 -1.6 -5.5 nucleoid-associated protein compare
AO353_15470 -1.5 -10.0 protoheme IX farnesyltransferase compare
AO353_15465 -1.5 -5.7 cytochrome C oxidase compare
AO353_04365 -1.5 -4.8 recombinase XerD compare
AO353_06045 -1.5 -6.2 exodeoxyribonuclease V subunit beta compare
AO353_03585 -1.5 -2.4 ATP-dependent DNA helicase RuvA compare
AO353_08880 -1.4 -2.5 exopolyphosphatase compare
AO353_10430 -1.4 -3.4 chromosome partitioning protein ParB compare
AO353_06495 -1.4 -5.1 gamma-glutamyl phosphate reductase compare
AO353_12535 -1.4 -3.0 hypothetical protein compare
AO353_08685 -1.4 -6.6 N-acetylglutamate synthase compare
AO353_04355 -1.4 -2.2 homoserine dehydrogenase compare
AO353_05625 -1.4 -1.6 transcription elongation factor GreA compare
AO353_24130 -1.4 -3.4 hypothetical protein compare
AO353_23725 -1.4 -4.1 hypothetical protein compare
AO353_09890 -1.4 -4.5 phosphate ABC transporter ATP-binding protein compare
AO353_16425 -1.4 -2.0 Fe-S metabolism protein SufE compare
AO353_14495 -1.4 -8.2 acetolactate synthase 3 catalytic subunit compare
AO353_09050 -1.4 -3.1 recombinase XerC compare
AO353_26180 -1.3 -3.6 phage tail protein compare
AO353_03360 -1.3 -6.2 glucose-6-phosphate dehydrogenase compare
AO353_27695 -1.3 -6.5 isocitrate dehydrogenase compare
AO353_09905 -1.3 -6.9 phosphate-binding protein compare
AO353_14990 -1.3 -2.6 hypothetical protein compare
AO353_14740 -1.3 -3.2 GTP-binding protein compare
AO353_05690 -1.2 -3.2 SsrA-binding protein compare
AO353_07075 -1.2 -4.6 elongation factor Tu compare
AO353_23735 -1.2 -5.8 AAA family ATPase compare
AO353_04240 -1.2 -2.3 chemotaxis protein CheW compare
AO353_23400 -1.2 -2.3 hypothetical protein compare
AO353_08350 -1.2 -5.9 hypothetical protein compare
AO353_13395 -1.2 -2.5 protein hupE compare
AO353_16810 -1.2 -3.4 recombinase RecX compare
AO353_04175 -1.2 -3.7 glycerol uptake facilitator GlpF compare
AO353_27650 -1.2 -3.9 cell division protein FtsK compare
AO353_01410 -1.2 -2.9 ribonuclease E compare
AO353_23710 -1.2 -3.5 protein BatD compare
AO353_18555 -1.2 -8.3 aromatic amino acid transporter compare
AO353_12105 -1.1 -5.0 peptidase S41 compare
AO353_14775 -1.1 -5.1 hypothetical protein compare
AO353_05420 -1.1 -1.6 peptide chain release factor 3 compare
AO353_03710 -1.1 -2.5 formyltetrahydrofolate deformylase compare
AO353_00515 -1.1 -2.6 hypothetical protein compare
AO353_08005 -1.1 -3.8 thioesterase compare
AO353_13685 -1.1 -3.7 3-dehydroquinate dehydratase compare
AO353_25585 -1.1 -2.0 argininosuccinate lyase compare
AO353_28425 -1.1 -2.2 TetR family transcriptional regulator compare
AO353_03210 -1.1 -3.4 GNAT family acetyltransferase compare
AO353_14940 -1.1 -3.1 malate:quinone oxidoreductase compare
AO353_10670 -1.1 -5.1 shikimate dehydrogenase compare
AO353_13200 -1.1 -7.2 exoribonuclease R compare
AO353_10780 -1.1 -1.6 DNA-binding protein compare
AO353_15480 -1.1 -2.2 hypothetical protein compare
AO353_27410 -1.1 -2.5 hypothetical protein compare
AO353_23715 -1.1 -4.9 hypothetical protein compare
AO353_23785 -1.1 -1.8 hypothetical protein compare
AO353_00675 -1.1 -4.8 recombination protein RecR compare
AO353_20660 -1.1 -3.5 pseudouridine synthase compare
AO353_18505 -1.0 -2.1 translation initiation factor 2 compare
AO353_09045 -1.0 -1.7 hypothetical protein compare
AO353_07315 -1.0 -2.1 rRNA methyltransferase compare
AO353_09900 -1.0 -6.5 phosphate ABC transporter permease compare
AO353_06325 -1.0 -3.0 hypothetical protein compare
AO353_12565 -1.0 -2.3 type II secretion system protein GspH compare
AO353_23730 -1.0 -2.0 hypothetical protein compare
AO353_09250 -1.0 -2.5 exodeoxyribonuclease III compare
AO353_13100 -1.0 -1.7 GTPase RsgA compare
AO353_10985 -1.0 -1.6 hypothetical protein compare
AO353_23720 -1.0 -2.8 BatB protein compare
AO353_03715 -1.0 -2.1 H-NS histone compare
AO353_25745 -1.0 -2.9 LysR family transcriptional regulator compare
AO353_27720 -1.0 -3.4 cupin compare
AO353_13225 -1.0 -2.4 50S ribosomal protein L9 compare
AO353_19840 -1.0 -1.8 hypothetical protein compare
AO353_16375 -1.0 -2.4 hypothetical protein compare
AO353_10435 -1.0 -5.9 chromosome partitioning protein compare
AO353_12930 -1.0 -2.7 GlcNAc-PI de-N-acetylase compare
AO353_18120 -1.0 -1.9 hypothetical protein compare
AO353_00650 -0.9 -2.1 cytochrome biogenesis protein compare
AO353_08165 -0.9 -2.2 pyrroline-5-carboxylate reductase compare
AO353_02885 -0.9 -2.0 flagellar biosynthesis protein FlgN compare
AO353_11775 -0.9 -4.6 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_27435 -0.9 -1.8 hypothetical protein compare
AO353_17035 -0.9 -3.3 hypothetical protein compare
AO353_24275 -0.9 -2.0 transcriptional regulator compare
AO353_23425 -0.9 -3.1 3-demethylubiquinone-9 3-methyltransferase compare
AO353_18560 -0.9 -2.1 class I peptide chain release factor compare
AO353_03370 -0.9 -3.1 aldose epimerase compare
AO353_02040 -0.9 -2.3 integration host factor subunit beta compare
AO353_21355 -0.9 -1.6 xylose isomerase compare
AO353_10520 -0.9 -3.9 GntR family transcriptional regulator compare
AO353_08110 -0.9 -4.3 glutathione synthetase compare
AO353_03410 -0.9 -2.1 chemotaxis protein CheY compare
AO353_20170 -0.9 -3.1 trigger factor compare
AO353_14420 -0.9 -3.0 molecular chaperone DnaK compare
AO353_12390 -0.9 -2.2 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_15730 -0.9 -2.4 hypothetical protein compare
AO353_14975 -0.9 -3.4 hypothetical protein compare
AO353_09720 -0.9 -1.4 hypothetical protein compare
AO353_19770 -0.9 -1.8 peptidase compare
AO353_02000 -0.9 -2.5 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_06425 -0.9 -1.9 lipoyl synthase compare
AO353_12420 -0.9 -2.7 predicted FeS cluster maintenance protein (from data) compare
AO353_07515 -0.9 -1.0 transporter compare
AO353_08435 -0.9 -2.5 phosphatidylglycerophosphatase compare
AO353_09040 -0.9 -1.3 diaminopimelate epimerase compare
AO353_20175 -0.9 -2.2 ATP-dependent Clp protease proteolytic subunit compare
AO353_16765 -0.8 -1.9 hypothetical protein compare
AO353_17675 -0.8 -2.9 hypothetical protein compare
AO353_14855 -0.8 -5.0 uracil phosphoribosyltransferase compare
AO353_05885 -0.8 -3.4 glyoxalase compare
AO353_14395 -0.8 -2.9 poly(A) polymerase compare
AO353_01685 -0.8 -1.5 hypothetical protein compare
AO353_19145 -0.8 -2.9 protease HtpX compare
AO353_17540 -0.8 -1.6 helicase compare
AO353_03420 -0.8 -3.1 phosphogluconate dehydratase compare
AO353_08115 -0.8 -3.6 energy transducer TonB compare
AO353_23570 -0.8 -2.5 LysR family transcriptional regulator compare
AO353_10885 -0.8 -4.0 metal ABC transporter permease compare
AO353_04520 -0.8 -3.4 elongation factor 4 compare
AO353_05125 -0.8 -2.8 BolA family transcriptional regulator compare
AO353_00460 -0.8 -1.7 TetR family transcriptional regulator compare
AO353_16495 -0.8 -2.8 zinc metallopeptidase RseP compare
AO353_14370 -0.8 -4.1 glucose-6-phosphate isomerase compare
AO353_10480 -0.8 -5.0 recombinase RecF compare
AO353_18425 -0.8 -2.9 hypothetical protein compare
AO353_03430 -0.8 -2.3 methylglyoxal synthase compare
AO353_08510 -0.8 -3.4 3-phosphoglycerate dehydrogenase compare
AO353_09030 -0.8 -1.1 iron donor protein CyaY compare
AO353_08245 -0.8 -1.9 cell division ATP-binding protein FtsE compare
AO353_04085 -0.8 -5.6 endonuclease III compare
AO353_15450 -0.8 -5.4 ubiquinol oxidase subunit II compare
AO353_12015 -0.8 -1.8 antitoxin compare
AO353_29185 -0.8 -2.8 TetR family transcriptional regulator compare
AO353_17940 -0.8 -1.8 hypothetical protein compare
AO353_12460 -0.8 -4.3 malate dehydrogenase compare
AO353_25355 -0.8 -1.6 hypothetical protein compare
AO353_13140 -0.8 -2.9 tRNA dimethylallyltransferase compare
AO353_09860 -0.8 -4.9 histidine kinase compare
AO353_29280 -0.8 -1.9 hypothetical protein compare
AO353_24440 -0.8 -1.4 reactive intermediate/imine deaminase compare
AO353_14150 -0.7 -1.3 peptidylprolyl isomerase compare
AO353_02395 -0.7 -5.6 mechanosensitive ion channel protein compare
AO353_10890 -0.7 -3.1 methionine ABC transporter ATP-binding protein compare
AO353_12935 -0.7 -2.3 glycosyltransferase compare
AO353_25835 -0.7 -3.1 6-phosphogluconate dehydrogenase compare
AO353_08455 -0.7 -3.4 hypothetical protein compare
AO353_18925 -0.7 -0.8 ATPase compare
AO353_23840 -0.7 -2.3 hypothetical protein compare
AO353_04480 -0.7 -2.3 NGG1p interacting factor NIF3 compare
AO353_14115 -0.7 -3.7 gamma-glutamyl kinase compare
AO353_23510 -0.7 -2.1 transcriptional regulator compare
AO353_26965 -0.7 -3.6 alkyl hydroperoxide reductase compare
AO353_19135 -0.7 -2.7 aromatic ring-opening dioxygenase LigB compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in stress experiments

For stress D-Cycloserine across organisms