Experiment set3IT094 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Cisplatin 0.025 mg/ml

200 most important genes:

  gene name fitness t score description  
Ga0059261_0645 -5.1 -6.1 DNA replication and repair protein RecR conserved
Ga0059261_3189 -5.1 -8.6 DNA replication and repair protein RecO conserved
Ga0059261_3368 -4.9 -6.7 Predicted transcriptional regulator compare
Ga0059261_0249 -4.6 -13.5 Superfamily I DNA and RNA helicases conserved
Ga0059261_0674 -4.4 -19.3 excinuclease ABC, A subunit conserved
Ga0059261_3779 -4.2 -20.1 Excinuclease ABC subunit B conserved
Ga0059261_0204 -4.0 -6.7 protein RecA compare
Ga0059261_1941 -4.0 -20.1 DNA damage response helicase, ligase-associated (from data) conserved
Ga0059261_3186 -3.8 -13.7 Excinuclease ABC subunit C conserved
Ga0059261_2707 -3.2 -8.0 fructose-1,6-bisphosphatase, class II compare
Ga0059261_4187 -2.6 -11.5 acyl-CoA ligase (AMP-forming), exosortase A-associated compare
Ga0059261_4188 -2.5 -8.3 pyridoxal-dependent decarboxylase, exosortase A system-associated compare
Ga0059261_2490 -2.4 -7.3 Small protein A (tmRNA-binding) compare
Ga0059261_0349 -2.2 -5.4 MarR family compare
Ga0059261_1939 -2.2 -3.3 putative phosphoesterase compare
Ga0059261_1601 -2.1 -3.9 protein-(glutamine-N5) methyltransferase, release factor-specific compare
Ga0059261_1369 -2.0 -10.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_1909 -2.0 -8.4 MAF protein compare
Ga0059261_2189 -1.9 -7.9 uncharacterized domain 1 compare
Ga0059261_0321 -1.9 -2.1 hypothetical protein compare
Ga0059261_1370 -1.9 -8.0 Signal transduction histidine kinase compare
Ga0059261_2418 -1.8 -5.7 lycopene cyclase compare
Ga0059261_2417 -1.8 -4.4 phytoene desaturase compare
Ga0059261_4186 -1.7 -1.6 Phosphopantetheine attachment site compare
Ga0059261_2190 -1.6 -3.5 PTS IIA-like nitrogen-regulatory protein PtsN compare
Ga0059261_0958 -1.6 -10.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) conserved
Ga0059261_1928 -1.6 -4.9 Predicted permeases compare
Ga0059261_2244 -1.6 -10.0 DNA polymerase I (EC 2.7.7.7) compare
Ga0059261_1929 -1.5 -5.5 Putative transmembrane protein (Alph_Pro_TM) compare
Ga0059261_1911 -1.5 -2.4 Thioredoxin-like proteins and domains compare
Ga0059261_3227 -1.5 -2.1 GTP-binding protein YchF compare
Ga0059261_1026 -1.4 -4.3 DNA repair protein RecN compare
Ga0059261_3605 -1.4 -3.8 tRNA compare
Ga0059261_3502 -1.4 -3.3 Fatty acid desaturase compare
Ga0059261_0613 -1.3 -3.5 FecR family protein compare
Ga0059261_1287 -1.3 -7.7 poly(R)-hydroxyalkanoic acid synthase, class I compare
Ga0059261_0163 -1.3 -3.2 Major Facilitator Superfamily compare
Ga0059261_3595 -1.3 -5.1 Site-specific recombinase XerD compare
Ga0059261_0960 -1.3 -10.3 transcription-repair coupling factor (mfd) conserved
Ga0059261_2181 -1.2 -8.7 penicillin-binding protein, 1A family compare
Ga0059261_2391 -1.2 -1.5 Helix-turn-helix domain compare
Ga0059261_3097 -1.2 -4.3 Calcineurin-like phosphoesterase compare
Ga0059261_3125 -1.1 -1.4 Imidazoleglycerol-phosphate synthase compare
Ga0059261_2481 -1.1 -5.1 Ppx/GppA phosphatase family compare
Ga0059261_0170 -1.1 -3.3 Uncharacterized protein involved in biosynthesis of c-type cytochromes compare
Ga0059261_1382 -1.1 -6.1 periplasmic serine protease, Do/DeqQ family compare
Ga0059261_2013 -1.1 -8.3 signal peptidase I, bacterial type compare
Ga0059261_3103 -1.1 -3.7 Glycosyltransferase compare
Ga0059261_2514 -1.1 -7.9 phosphoenolpyruvate-protein phosphotransferase compare
Ga0059261_0751 -1.1 -7.5 DNA repair protein RadA conserved
Ga0059261_1600 -1.1 -2.7 Domain of unknown function (DUF4167) compare
Ga0059261_3492 -1.0 -4.3 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_1451 -1.0 -3.4 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) compare
Ga0059261_0172 -1.0 -6.0 Cytochrome c biogenesis factor compare
Ga0059261_1258 -1.0 -9.1 TonB-dependent siderophore receptor compare
Ga0059261_3130 -1.0 -5.7 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_1381 -1.0 -4.3 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_3101 -1.0 -3.1 nucleotide sugar dehydrogenase compare
Ga0059261_3490 -1.0 -5.0 Response regulator receiver domain/Sigma-70, region 4 compare
Ga0059261_3124 -0.9 -3.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Ga0059261_3114 -0.9 -5.2 hypothetical protein compare
Ga0059261_0171 -0.9 -1.9 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_3615 -0.9 -1.4 hypothetical protein compare
Ga0059261_1368 -0.9 -2.6 hypothetical protein compare
Ga0059261_0175 -0.9 -5.0 heme exporter protein CcmC compare
Ga0059261_1795 -0.9 -3.1 Predicted nucleoside-diphosphate-sugar epimerases compare
Ga0059261_0245 -0.9 -1.5 pseudouridine synthase compare
Ga0059261_0131 -0.9 -4.0 hypothetical protein compare
Ga0059261_3545 -0.9 -1.5 hypothetical protein compare
Ga0059261_0650 -0.8 -1.7 Negative regulator of beta-lactamase expression compare
Ga0059261_2764 -0.8 -3.6 Site-specific recombinase XerD compare
Ga0059261_1043 -0.8 -2.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_1257 -0.8 -5.2 Uncharacterized iron-regulated protein compare
Ga0059261_1560 -0.8 -2.8 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Ga0059261_1831 -0.8 -2.5 hypothetical protein compare
Ga0059261_0951 -0.8 -3.7 hypothetical protein compare
Ga0059261_3481 -0.8 -4.1 Beta-glucosidase-related glycosidases compare
Ga0059261_3210 -0.8 -2.4 Organic radical activating enzymes compare
Ga0059261_0898 -0.8 -2.6 Membrane protein implicated in regulation of membrane protease activity compare
Ga0059261_3671 -0.8 -1.9 Citrate lyase beta subunit compare
Ga0059261_3512 -0.8 -1.6 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
Ga0059261_1380 -0.8 -5.2 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_0770 -0.8 -1.8 hypothetical protein compare
Ga0059261_3119 -0.8 -2.6 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_0121 -0.8 -1.6 Sporulation related domain compare
Ga0059261_2194 -0.7 -2.3 shikimate dehydrogenase (EC 1.1.1.25) (from data) compare
Ga0059261_3127 -0.7 -3.8 hypothetical protein compare
Ga0059261_3650 -0.7 -2.4 hypothetical protein compare
Ga0059261_1545 -0.7 -3.0 Fe2+/Zn2+ uptake regulation proteins compare
Ga0059261_2034 -0.7 -4.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_1868 -0.7 -1.3 ABC-type uncharacterized transport system, auxiliary component compare
Ga0059261_0889 -0.7 -1.9 Cold shock proteins compare
Ga0059261_2351 -0.7 -2.3 hypothetical protein compare
Ga0059261_1293 -0.7 -5.0 (p)ppGpp synthetase, RelA/SpoT family compare
Ga0059261_3083 -0.6 -2.1 hypothetical protein compare
Ga0059261_0950 -0.6 -1.4 Uncharacterized protein conserved in bacteria (DUF2336) compare
Ga0059261_1860 -0.6 -0.8 Transposase compare
Ga0059261_2294 -0.6 -1.1 Cell division protein compare
Ga0059261_0290 -0.6 -2.1 3-dehydroquinate dehydratase (EC 4.2.1.10) compare
Ga0059261_3238 -0.6 -2.0 hypothetical protein compare
Ga0059261_1605 -0.6 -2.8 transcriptional regulator, TetR family compare
Ga0059261_2261 -0.6 -4.8 ATP-dependent DNA helicase RecQ compare
Ga0059261_3855 -0.6 -5.3 ergothioneine biosynthesis protein EgtB compare
Ga0059261_2313 -0.6 -2.8 condensin subunit Smc compare
Ga0059261_4012 -0.6 -1.3 AMP nucleosidase compare
Ga0059261_1985 -0.6 -1.2 transcriptional regulator NrdR compare
Ga0059261_2191 -0.6 -3.4 ribosomal subunit interface protein compare
Ga0059261_3965 -0.6 -3.2 formimidoylglutamate deiminase (EC 3.5.3.13) compare
Ga0059261_0255 -0.6 -1.6 SurA N-terminal domain/PPIC-type PPIASE domain compare
Ga0059261_0411 -0.6 -1.8 Uncharacterized conserved protein compare
Ga0059261_0246 -0.6 -1.3 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
Ga0059261_4217 -0.6 -1.5 hypothetical protein compare
Ga0059261_0918 -0.6 -2.7 Phosphotransferase system, mannose/fructose-specific component IIA compare
Ga0059261_2840 -0.5 -1.5 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_4025 -0.5 -0.9 Nucleotidyl transferase compare
Ga0059261_1762 -0.5 -0.8 hypothetical protein compare
Ga0059261_0823 -0.5 -3.4 hypothetical protein compare
Ga0059261_1872 -0.5 -2.5 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
Ga0059261_2222 -0.5 -3.1 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Ga0059261_0136 -0.5 -1.7 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation compare
Ga0059261_1214 -0.5 -1.1 hypothetical protein compare
Ga0059261_3347 -0.5 -1.7 Domain of unknown function DUF87 compare
Ga0059261_4054 -0.5 -1.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_0087 -0.5 -1.7 hypothetical protein compare
Ga0059261_3156 -0.5 -2.5 peptidoglycan-associated lipoprotein compare
Ga0059261_2415 -0.5 -3.7 Phytoene/squalene synthetase compare
Ga0059261_2276 -0.5 -4.1 Fatty acid hydroxylase superfamily compare
Ga0059261_3451 -0.5 -1.2 hypothetical protein compare
Ga0059261_1870 -0.5 -2.4 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Ga0059261_2612 -0.5 -2.0 Uncharacterized secreted protein compare
Ga0059261_1335 -0.5 -2.0 Predicted ATPase compare
Ga0059261_0120 -0.5 -3.8 lytic murein transglycosylase compare
Ga0059261_3871 -0.5 -1.3 formate dehydrogenase family accessory protein FdhD compare
Ga0059261_0864 -0.5 -1.6 hypothetical protein compare
Ga0059261_0062 -0.5 -1.6 hypothetical protein compare
Ga0059261_0013 -0.5 -1.2 hypothetical protein compare
Ga0059261_3854 -0.5 -3.8 dimethylhistidine N-methyltransferase compare
Ga0059261_2743 -0.5 -2.1 hypothetical protein compare
Ga0059261_0385 -0.5 -2.7 P-type conjugative transfer protein TrbJ compare
Ga0059261_4056 -0.5 -3.5 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Ga0059261_1652 -0.5 -0.9 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily compare
Ga0059261_3308 -0.5 -1.1 Uncharacterized conserved protein compare
Ga0059261_4007 -0.5 -1.0 Transcriptional regulators compare
Ga0059261_3852 -0.5 -3.6 putative exonuclease, DNA ligase-associated compare
Ga0059261_2314 -0.5 -1.5 Protein-disulfide isomerase compare
Ga0059261_3637 -0.5 -1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_0992 -0.5 -2.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Ga0059261_3128 -0.4 -3.6 capsular exopolysaccharide family compare
Ga0059261_3105 -0.4 -3.2 Methyltransferase domain compare
Ga0059261_0524 -0.4 -2.6 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase compare
Ga0059261_3638 -0.4 -1.3 Predicted integral membrane protein (DUF2282) compare
Ga0059261_0272 -0.4 -2.0 Uncharacterized small protein compare
Ga0059261_2680 -0.4 -0.7 hypothetical protein compare
Ga0059261_2179 -0.4 -3.1 Phospholipid N-methyltransferase compare
Ga0059261_0038 -0.4 -1.7 Transcriptional regulators compare
Ga0059261_1871 -0.4 -3.1 ABC transport permease subunit compare
Ga0059261_4044 -0.4 -2.4 FOG: EAL domain compare
Ga0059261_3853 -0.4 -3.1 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_1300 -0.4 -1.6 hypothetical protein compare
Ga0059261_3438 -0.4 -2.6 Nucleotidyltransferase/DNA polymerase involved in DNA repair compare
Ga0059261_0369 -0.4 -1.0 ribosomal protein L9 compare
Ga0059261_1869 -0.4 -1.8 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Ga0059261_3786 -0.4 -2.1 Malic enzyme compare
Ga0059261_0827 -0.4 -1.4 hypothetical protein compare
Ga0059261_1415 -0.4 -2.0 UDP-N-acetylmuramate-alanine ligase compare
Ga0059261_2213 -0.4 -2.1 Domain of unknown function (DUF3576) compare
Ga0059261_3230 -0.4 -2.4 hypothetical protein compare
Ga0059261_0224 -0.4 -1.9 Exopolyphosphatase compare
Ga0059261_3160 -0.4 -1.6 TolQ protein compare
Ga0059261_0957 -0.4 -1.1 Protein of unknown function (DUF2798) compare
Ga0059261_1484 -0.4 -1.4 hypothetical protein compare
Ga0059261_3129 -0.4 -2.6 SLBB domain/Polysaccharide biosynthesis/export protein compare
Ga0059261_2420 -0.4 -1.7 transcriptional regulator, TetR family compare
Ga0059261_3100 -0.4 -2.9 Sugar transferases involved in lipopolysaccharide synthesis compare
Ga0059261_1263 -0.4 -1.2 hypothetical protein compare
Ga0059261_4212 -0.4 -2.4 TPR repeat compare
Ga0059261_2640 -0.4 -1.3 Asp/Glu/Hydantoin racemase compare
Ga0059261_3425 -0.4 -2.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_3613 -0.4 -2.3 Dihydroneopterin aldolase compare
Ga0059261_2352 -0.4 -1.6 hypothetical protein compare
Ga0059261_3627 -0.4 -2.1 Rho termination factor, N-terminal domain compare
Ga0059261_3271 -0.4 -0.6 arsenate reductase (glutaredoxin) compare
Ga0059261_3064 -0.4 -1.4 hypothetical protein compare
Ga0059261_1312 -0.4 -1.7 amino acid/peptide transporter (Peptide:H+ symporter), bacterial compare
Ga0059261_1122 -0.4 -1.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Ga0059261_2973 -0.4 -1.9 hypothetical protein compare
Ga0059261_4055 -0.4 -2.5 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) compare
Ga0059261_0159 -0.4 -2.2 Transcriptional regulator compare
Ga0059261_1564 -0.4 -1.5 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
Ga0059261_2070 -0.4 -2.0 Flagellar assembly protein FliH compare
Ga0059261_3157 -0.4 -3.0 tol-pal system beta propeller repeat protein TolB compare
Ga0059261_1064 -0.4 -1.5 Uncharacterized conserved protein compare
Ga0059261_2478 -0.4 -1.7 Uncharacterized conserved protein compare
Ga0059261_0444 -0.4 -1.0 Heavy-metal resistance compare
Ga0059261_3085 -0.4 -1.0 Predicted transcriptional regulators compare
Ga0059261_3159 -0.4 -1.3 TolR protein compare
Ga0059261_3851 -0.4 -2.9 DNA ligase, ATP-dependent, PP_1105 family compare
Ga0059261_0955 -0.4 -1.8 PilZ domain compare
Ga0059261_3579 -0.4 -1.7 hypothetical protein compare
Ga0059261_0039 -0.4 -2.1 His Kinase A (phospho-acceptor) domain compare


Specific Phenotypes

For 10 genes in this experiment

For stress Cisplatin in Sphingomonas koreensis DSMZ 15582

For stress Cisplatin across organisms