Experiment set3IT093 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Lomefloxacin hydrochloride 0.001 mM

200 most important genes:

  gene name fitness t score description  
AO353_03815 -4.7 -2.9 heme utilization protein compare
AO353_16195 -4.2 -2.7 DNA mismatch repair protein MutT compare
AO353_02940 -3.9 -2.7 DNA-binding protein compare
AO353_23785 -3.7 -2.2 hypothetical protein compare
AO353_26845 -3.6 -6.4 acriflavine resistance protein B compare
AO353_27550 -3.5 -1.8 hypothetical protein compare
AO353_15935 -3.4 -5.1 exodeoxyribonuclease conserved
AO353_26835 -3.3 -2.3 transcriptional regulator compare
AO353_01685 -3.3 -2.3 hypothetical protein compare
AO353_12070 -3.3 -7.4 imidazoleglycerol-phosphate dehydratase compare
AO353_25550 -3.3 -5.0 4-amino-4-deoxy-L-arabinose transferase compare
AO353_09320 -3.3 -4.5 ATP-dependent DNA helicase RecG compare
AO353_14775 -3.3 -3.2 hypothetical protein compare
AO353_06415 -3.2 -3.8 hypothetical protein compare
AO353_03590 -3.2 -2.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_05135 -3.2 -7.4 toluene tolerance protein compare
AO353_09015 -3.1 -4.3 DNA-binding protein compare
AO353_17295 -3.1 -14.0 multidrug transporter compare
AO353_22685 -3.1 -2.1 peroxidase compare
AO353_05660 -3.0 -7.1 DNA repair protein RecN conserved
AO353_17300 -3.0 -5.3 antibiotic transporter compare
AO353_13980 -3.0 -5.3 DNA repair protein RadA conserved
AO353_03715 -2.9 -2.0 H-NS histone compare
AO353_21425 -2.9 -3.9 hypothetical protein compare
AO353_17290 -2.9 -4.8 multidrug transporter compare
AO353_10055 -2.9 -9.6 DNA helicase II compare
AO353_12105 -2.8 -4.3 peptidase S41 compare
AO353_03580 -2.8 -1.9 ATP-dependent DNA helicase RuvB compare
AO353_16805 -2.8 -3.8 recombinase RecA compare
AO353_04365 -2.7 -4.9 recombinase XerD compare
AO353_00330 -2.7 -5.8 hypothetical protein compare
AO353_03585 -2.7 -3.7 ATP-dependent DNA helicase RuvA compare
AO353_05150 -2.7 -3.7 ABC transporter ATP-binding protein compare
AO353_11485 -2.6 -4.4 hypothetical protein compare
AO353_08265 -2.6 -5.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_09240 -2.6 -2.5 acetylglutamate kinase compare
AO353_00495 -2.6 -2.5 DNA topoisomerase I compare
AO353_10930 -2.6 -6.5 DNA polymerase I compare
AO353_04360 -2.6 -6.9 protein-disulfide isomerase compare
AO353_10945 -2.6 -3.0 cytochrome C compare
AO353_15900 -2.5 -2.4 GTP-binding protein compare
AO353_09905 -2.5 -8.2 phosphate-binding protein compare
AO353_06585 -2.5 -7.2 hypothetical protein compare
AO353_18170 -2.5 -7.1 aspartyl beta-hydroxylase compare
AO353_04565 -2.4 -4.4 nucleoid-associated protein compare
AO353_12080 -2.4 -4.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_05130 -2.4 -2.0 anti-anti-sigma factor compare
AO353_16810 -2.4 -3.6 recombinase RecX compare
AO353_08885 -2.4 -13.5 polyphosphate kinase compare
AO353_21110 -2.4 -2.8 hypothetical protein compare
AO353_02440 -2.4 -10.0 peptidase S41 compare
AO353_16915 -2.4 -8.5 hypothetical protein compare
AO353_12915 -2.3 -6.4 carbamoyltransferase compare
AO353_10780 -2.3 -2.4 DNA-binding protein compare
AO353_10950 -2.3 -8.9 thiol:disulfide interchange protein compare
AO353_12075 -2.3 -7.3 imidazole glycerol phosphate synthase subunit HisH compare
AO353_25990 -2.3 -5.3 aspartyl beta-hydroxylase compare
AO353_26840 -2.3 -2.9 RND transporter compare
AO353_21410 -2.3 -3.0 hypothetical protein compare
AO353_23450 -2.2 -3.0 LysR family transcriptional regulator compare
AO353_10630 -2.2 -4.7 16S rRNA methyltransferase compare
AO353_20185 -2.2 -4.7 DNA-binding protein compare
AO353_05140 -2.2 -6.5 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_02190 -2.2 -10.6 hypothetical protein compare
AO353_02280 -2.2 -2.2 DNA mismatch repair protein MutS compare
AO353_22305 -2.2 -2.2 LysR family transcriptional regulator compare
AO353_15905 -2.1 -5.3 outer membrane protein assembly factor BamB compare
AO353_01215 -2.1 -8.2 hypothetical protein compare
AO353_03595 -2.1 -3.6 hypothetical protein compare
AO353_02815 -2.1 -5.1 transcriptional regulator compare
AO353_26045 -2.1 -2.3 hypothetical protein compare
AO353_14115 -2.0 -5.8 gamma-glutamyl kinase compare
AO353_19770 -2.0 -2.2 peptidase compare
AO353_22700 -2.0 -1.9 LexA family transcriptional regulator compare
AO353_09890 -2.0 -4.3 phosphate ABC transporter ATP-binding protein compare
AO353_25505 -2.0 -7.7 4-amino-4-deoxy-L-arabinose transferase compare
AO353_27650 -2.0 -3.6 cell division protein FtsK compare
AO353_09315 -2.0 -6.9 LysR family transcriptional regulator compare
AO353_00825 -2.0 -2.9 porin compare
AO353_15290 -2.0 -6.7 methyltransferase compare
AO353_26520 -1.9 -3.1 TetR family transcriptional regulator compare
AO353_05145 -1.9 -4.6 ABC transporter permease compare
AO353_24135 -1.9 -3.3 hypothetical protein compare
AO353_19250 -1.9 -1.8 molybdenum cofactor guanylyltransferase compare
AO353_15730 -1.9 -3.2 hypothetical protein compare
AO353_20170 -1.9 -3.6 trigger factor compare
AO353_15830 -1.8 -2.2 transcriptional regulator compare
AO353_06710 -1.8 -1.5 riboflavin synthase subunit alpha compare
AO353_22520 -1.8 -2.1 hypothetical protein compare
AO353_19145 -1.8 -3.4 protease HtpX compare
AO353_25585 -1.8 -2.0 argininosuccinate lyase compare
AO353_13040 -1.8 -6.5 esterase conserved
AO353_10430 -1.8 -3.3 chromosome partitioning protein ParB compare
AO353_26285 -1.8 -1.6 hypothetical protein compare
AO353_01220 -1.7 -2.1 hypothetical protein compare
AO353_12945 -1.7 -5.8 toluene tolerance protein compare
AO353_16495 -1.7 -4.8 zinc metallopeptidase RseP compare
AO353_19295 -1.7 -2.0 hypothetical protein compare
AO353_26945 -1.7 -2.0 transcriptional regulator compare
AO353_14340 -1.7 -3.2 phospholipid-binding protein compare
AO353_26950 -1.7 -3.5 hypothetical protein compare
AO353_09050 -1.7 -3.3 recombinase XerC compare
AO353_21430 -1.7 -2.2 hypothetical protein compare
AO353_08115 -1.7 -4.7 energy transducer TonB compare
AO353_07645 -1.7 -1.7 sarcosine oxidase subunit gamma compare
AO353_23720 -1.7 -3.1 BatB protein compare
AO353_17020 -1.7 -7.2 ATP-dependent DNA helicase DinG conserved
AO353_20265 -1.7 -2.3 spore coat protein compare
AO353_07925 -1.7 -7.4 beta-hydroxylase compare
AO353_16350 -1.6 -3.4 SAM-dependent methyltransferase compare
AO353_08350 -1.6 -5.9 hypothetical protein compare
AO353_20785 -1.6 -4.3 carbon storage regulator CsrA compare
AO353_20800 -1.6 -0.8 hypothetical protein compare
AO353_09860 -1.6 -8.5 histidine kinase compare
AO353_18630 -1.6 -6.7 beta-ketoacyl-ACP synthase compare
AO353_28055 -1.6 -2.6 hypothetical protein compare
AO353_10995 -1.6 -7.2 hypothetical protein compare
AO353_26055 -1.6 -2.1 hypothetical protein compare
AO353_06040 -1.6 -2.6 exodeoxyribonuclease V subunit alpha compare
AO353_27060 -1.5 -2.2 XshC-Cox1 family protein compare
AO353_24970 -1.5 -3.6 formate dehydrogenase compare
AO353_29185 -1.5 -3.7 TetR family transcriptional regulator compare
AO353_15480 -1.5 -1.7 hypothetical protein compare
AO353_14150 -1.5 -1.7 peptidylprolyl isomerase compare
AO353_08165 -1.5 -2.5 pyrroline-5-carboxylate reductase compare
AO353_20770 -1.5 -2.7 hypothetical protein compare
AO353_25355 -1.5 -2.6 hypothetical protein compare
AO353_21480 -1.5 -5.2 Cro/Cl family transcriptional regulator compare
AO353_09000 -1.5 -4.3 argininosuccinate lyase compare
AO353_04490 -1.4 -6.5 murein transglycosylase compare
AO353_14370 -1.4 -5.3 glucose-6-phosphate isomerase compare
AO353_26240 -1.4 -1.8 hypothetical protein compare
AO353_11165 -1.4 -7.0 hypothetical protein compare
AO353_12015 -1.4 -2.0 antitoxin compare
AO353_21455 -1.4 -1.3 cation:proton antiporter compare
AO353_23245 -1.4 -2.0 DNA-3-methyladenine glycosylase compare
AO353_22985 -1.4 -2.0 hypothetical protein compare
AO353_00515 -1.4 -2.6 hypothetical protein compare
AO353_02945 -1.4 -5.4 magnesium transporter compare
AO353_16600 -1.4 -6.3 stationary phase survival protein SurE compare
AO353_12225 -1.4 -2.5 hypothetical protein compare
AO353_03420 -1.4 -3.6 phosphogluconate dehydratase compare
AO353_15185 -1.4 -3.7 ATPase compare
AO353_23220 -1.4 -2.0 hypothetical protein compare
AO353_07610 -1.4 -1.2 hypothetical protein compare
AO353_05880 -1.4 -1.1 plasmid stabilization protein compare
AO353_08725 -1.4 -5.5 aminotransferase DegT compare
AO353_03210 -1.4 -2.4 GNAT family acetyltransferase compare
AO353_09660 -1.4 -1.6 hypothetical protein compare
AO353_17035 -1.4 -3.8 hypothetical protein compare
AO353_03360 -1.3 -5.1 glucose-6-phosphate dehydrogenase compare
AO353_25785 -1.3 -3.0 adhesin compare
AO353_12935 -1.3 -3.1 glycosyltransferase compare
AO353_09885 -1.3 -2.4 transcriptional regulator PhoU compare
AO353_22810 -1.3 -1.0 hypothetical protein compare
AO353_06745 -1.3 -2.2 zinc-binding protein compare
AO353_04475 -1.3 -1.7 hypothetical protein compare
AO353_27665 -1.3 -5.2 arginyl-tRNA-protein transferase compare
AO353_02640 -1.3 -1.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_23400 -1.3 -1.9 hypothetical protein compare
AO353_07315 -1.3 -1.7 rRNA methyltransferase compare
AO353_02740 -1.3 -3.4 hydroxyacid dehydrogenase compare
AO353_23350 -1.3 -2.3 hypothetical protein compare
AO353_01595 -1.3 -1.5 Flp pilus assembly protein CpaB compare
AO353_25570 -1.3 -6.0 glycosyltransferase compare
AO353_02520 -1.3 -2.0 sodium transporter compare
AO353_06455 -1.3 -1.5 D-alanyl-D-alanine carboxypeptidase compare
AO353_27525 -1.3 -1.8 AraC family transcriptional regulator compare
AO353_01135 -1.3 -1.2 enoyl-CoA hydratase compare
AO353_20410 -1.3 -1.5 hypothetical protein compare
AO353_14590 -1.3 -1.2 serine kinase/phosphatase compare
AO353_07910 -1.3 -1.9 hypothetical protein compare
AO353_11480 -1.3 -4.2 hypothetical protein compare
AO353_25815 -1.3 -2.4 hypothetical protein compare
AO353_25320 -1.3 -1.9 phosphoribosyl-dephospho-CoA transferase compare
AO353_20425 -1.3 -1.8 ArsC family transcriptional regulator compare
AO353_06050 -1.3 -4.2 exodeoxyribonuclease V subunit gamma compare
AO353_25530 -1.3 -4.4 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase compare
AO353_09950 -1.3 -2.9 aspartate ammonia-lyase compare
AO353_00850 -1.2 -3.3 ribonuclease activity regulator protein RraA compare
AO353_20340 -1.2 -2.7 gamma-carboxygeranoyl-CoA hydratase compare
AO353_29355 -1.2 -2.3 hypothetical protein compare
AO353_05810 -1.2 -1.9 dehydrogenase compare
AO353_26070 -1.2 -1.8 hypothetical protein compare
AO353_06045 -1.2 -4.7 exodeoxyribonuclease V subunit beta compare
AO353_18555 -1.2 -6.8 aromatic amino acid transporter compare
AO353_09900 -1.2 -6.5 phosphate ABC transporter permease compare
AO353_10495 -1.2 -2.7 serine hydroxymethyltransferase compare
AO353_12145 -1.2 -3.3 nitrogen regulation protein NR(I) compare
AO353_21540 -1.2 -2.6 type VI secretion protein compare
AO353_06530 -1.2 -7.1 peptidase C13 compare
AO353_04320 -1.2 -3.8 single-stranded-DNA-specific exonuclease RecJ compare
AO353_02560 -1.2 -6.1 recombinase RmuC compare
AO353_17435 -1.2 -3.4 hypothetical protein compare
AO353_07075 -1.2 -3.8 elongation factor Tu compare
AO353_25845 -1.2 -1.7 GNAT family acetyltransferase compare
AO353_27090 -1.2 -1.0 hypothetical protein compare
AO353_08015 -1.2 -4.7 5,10-methylenetetrahydrofolate reductase compare
AO353_22415 -1.2 -1.8 alcohol dehydrogenase compare
AO353_20000 -1.2 -2.3 phosphoribosyltransferase compare


Specific Phenotypes

For 29 genes in this experiment

For stress Lomefloxacin hydrochloride in Pseudomonas fluorescens FW300-N2E3

For stress Lomefloxacin hydrochloride across organisms