Experiment set3IT093 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Lomefloxacin hydrochloride 0.001 mM

Group: stress
Media: LB + Lomefloxacin hydrochloride (0.001 mM)
Culturing: pseudo3_N2E3_ML2, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Jayashree on 6/26/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 957 C5,C6

Specific Phenotypes

For 29 genes in this experiment

For stress Lomefloxacin hydrochloride in Pseudomonas fluorescens FW300-N2E3

For stress Lomefloxacin hydrochloride across organisms

SEED Subsystems

Subsystem #Specific
DNA repair, bacterial 4
Heat shock dnaK gene cluster extended 3
ATP-dependent RNA helicases, bacterial 1
DNA-replication 1
DNA Repair Base Excision 1
DNA repair, bacterial DinG and relatives 1
DNA repair, bacterial MutL-MutS system 1
Glutathione: Non-redox reactions 1
Heme and Siroheme Biosynthesis 1
Lipid A-Ara4N pathway ( Polymyxin resistance ) 1
Lipid A modifications 1
Methylglyoxal Metabolism 1
Periplasmic disulfide interchange 1
Queuosine-Archaeosine Biosynthesis 1
ZZ gjo need homes 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
UTP and CTP dephosphorylation I 7 5 4
methylglyoxal degradation VIII 3 2 1
NAD salvage pathway III (to nicotinamide riboside) 3 2 1
methylglyoxal degradation I 3 2 1
purine nucleotides degradation II (aerobic) 11 11 3
guanosine nucleotides degradation III 4 4 1
inosine 5'-phosphate degradation 4 4 1
guanosine nucleotides degradation II 4 4 1
adenosine nucleotides degradation I 8 7 2
purine nucleotides degradation I (plants) 12 10 3
guanosine nucleotides degradation I 4 3 1
adenosine nucleotides degradation II 5 5 1
superpathway of guanosine nucleotides degradation (plants) 6 5 1
superpathway of purines degradation in plants 18 14 3
ureide biosynthesis 7 6 1
pyrimidine deoxyribonucleotides de novo biosynthesis IV 7 6 1
pyrimidine deoxyribonucleotides biosynthesis from CTP 8 6 1
superpathway of methylglyoxal degradation 8 4 1
pyrimidine deoxyribonucleotides de novo biosynthesis I 9 9 1
pyrimidine deoxyribonucleotides de novo biosynthesis III 9 8 1
tunicamycin biosynthesis 9 2 1
NAD salvage (plants) 11 6 1
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) 14 12 1
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis 18 18 1