Experiment set3IT093 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Urea nitrogen source

200 most important genes:

  gene name fitness t score description  
PFLU_RS03645 -6.0 -8.3 tetratricopeptide repeat protein compare
PFLU_RS01645 -5.9 -8.1 S41 family peptidase compare
PFLU_RS14550 -5.3 -3.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS24125 -4.2 -2.9 cold-shock protein compare
PFLU_RS26545 -4.0 -13.0 sel1 repeat family protein compare
PFLU_RS12975 -3.9 -5.3 DUF934 domain-containing protein compare
PFLU_RS06320 -3.9 -4.6 OmpH family outer membrane protein compare
PFLU_RS03555 -3.9 -1.5 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS24485 -3.9 -15.6 hypothetical protein compare
PFLU_RS23065 -3.8 -10.7 phosphate acyltransferase PlsX compare
PFLU_RS28695 -3.8 -9.1 phosphoglycerate dehydrogenase compare
PFLU_RS22740 -3.7 -4.4 phosphoadenylyl-sulfate reductase compare
PFLU_RS22595 -3.6 -2.5 OmpA family protein compare
PFLU_RS02365 -3.5 -15.6 glycosyltransferase compare
PFLU_RS18505 -3.5 -11.7 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS22095 -3.4 -21.3 GTP diphosphokinase compare
PFLU_RS29875 -3.4 -17.6 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS26770 -3.3 -14.4 DedA family protein compare
PFLU_RS04070 -3.3 -5.8 peptide chain release factor 3 compare
PFLU_RS07695 -3.2 -4.8 beta-N-acetylhexosaminidase compare
PFLU_RS09055 -3.2 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS04430 -3.2 -8.6 ATP-binding cassette domain-containing protein compare
PFLU_RS07785 -3.1 -10.4 VacJ family lipoprotein compare
PFLU_RS12980 -3.1 -10.8 nitrite/sulfite reductase compare
PFLU_RS29885 -3.1 -11.5 LysR family transcriptional regulator compare
PFLU_RS02490 -3.0 -13.8 phosphoserine phosphatase SerB compare
PFLU_RS25760 -3.0 -14.6 glucose-6-phosphate isomerase compare
PFLU_RS28645 -3.0 -15.1 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS29880 -2.9 -13.8 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS23585 -2.9 -10.3 GntP family permease compare
PFLU_RS03970 -2.9 -10.1 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS00180 -2.9 -9.0 tryptophan synthase subunit beta compare
PFLU_RS08505 -2.9 -8.7 protease HtpX compare
PFLU_RS04435 -2.8 -7.8 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS02775 -2.8 -2.1 urease accessory protein UreF compare
PFLU_RS03770 -2.8 -12.9 sulfate adenylyltransferase subunit CysN compare
PFLU_RS23310 -2.8 -10.1 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS04440 -2.8 -10.6 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS28315 -2.8 -1.5 response regulator compare
PFLU_RS01965 -2.7 -1.9 ATP-dependent protease subunit HslV compare
PFLU_RS27365 -2.7 -9.6 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS00175 -2.7 -9.5 tryptophan synthase subunit alpha compare
PFLU_RS03765 -2.7 -11.7 sulfate adenylyltransferase subunit CysD compare
PFLU_RS06055 -2.7 -1.7 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS04445 -2.7 -7.7 ABC transporter substrate-binding protein compare
PFLU_RS29095 -2.7 -19.3 polyphosphate kinase 1 compare
PFLU_RS24330 -2.6 -7.9 phosphogluconate dehydratase compare
PFLU_RS00415 -2.6 -1.8 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS23725 -2.6 -13.8 glucose-6-phosphate dehydrogenase compare
PFLU_RS26640 -2.6 -12.4 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS23305 -2.5 -11.4 arginine N-succinyltransferase compare
PFLU_RS09980 -2.5 -16.0 peptidase S41 compare
PFLU_RS18530 -2.5 -5.1 DNA translocase FtsK compare
PFLU_RS26735 -2.5 -10.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS02045 -2.5 -18.2 glutamate synthase large subunit compare
PFLU_RS22105 -2.5 -6.9 cysteine synthase CysM compare
PFLU_RS25225 -2.5 -10.1 disulfide bond formation protein B compare
PFLU_RS04385 -2.4 -11.3 RNase adapter RapZ compare
PFLU_RS28650 -2.4 -6.1 RNA pyrophosphohydrolase compare
PFLU_RS25750 -2.3 -5.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS21495 -2.3 -3.4 TlpA family protein disulfide reductase compare
PFLU_RS25735 -2.3 -8.8 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS27445 -2.2 -12.8 phosphotransferase compare
PFLU_RS28655 -2.2 -13.5 HAD family hydrolase compare
PFLU_RS24085 -2.2 -3.6 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS24025 -2.2 -10.7 quinolinate synthase NadA compare
PFLU_RS23920 -2.2 -2.8 septation protein A compare
PFLU_RS28965 -2.2 -8.8 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS02050 -2.1 -12.2 NAD(P)-binding protein compare
PFLU_RS27440 -2.1 -7.0 nucleotidyltransferase family protein compare
PFLU_RS18645 -2.1 -3.1 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS27650 -2.1 -12.7 biotin synthase BioB compare
PFLU_RS26905 -2.1 -8.8 transcriptional regulator NrdR compare
PFLU_RS14810 -2.1 -2.0 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS25730 -2.1 -13.8 PAS domain S-box protein compare
PFLU_RS25755 -2.1 -4.8 pantoate--beta-alanine ligase compare
PFLU_RS29515 -2.0 -9.2 RidA family protein compare
PFLU_RS08065 -2.0 -8.3 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS18615 -2.0 -3.3 NADH-quinone oxidoreductase subunit A compare
PFLU_RS26595 -2.0 -2.3 lipoprotein compare
PFLU_RS17265 -2.0 -2.3 hypothetical protein compare
PFLU_RS20515 -2.0 -4.2 amidophosphoribosyltransferase compare
PFLU_RS28535 -2.0 -11.0 dihydroxy-acid dehydratase compare
PFLU_RS28725 -1.9 -9.8 DUF2059 domain-containing protein compare
PFLU_RS18640 -1.9 -3.8 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS07275 -1.9 -2.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS20540 -1.9 -8.5 phosphoribosylanthranilate isomerase compare
PFLU_RS20690 -1.9 -3.6 hypothetical protein compare
PFLU_RS19175 -1.9 -7.7 trigger factor compare
PFLU_RS13540 -1.9 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS28165 -1.9 -10.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS08155 -1.8 -4.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS01690 -1.8 -7.0 nitrogen regulation protein NR(II) compare
PFLU_RS11885 -1.8 -1.4 type II secretion system protein M compare
PFLU_RS25715 -1.8 -9.3 RNA polymerase-binding protein DksA compare
PFLU_RS14805 -1.8 -2.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS27645 -1.8 -9.2 8-amino-7-oxononanoate synthase compare
PFLU_RS30165 -1.8 -7.8 ParA family protein compare
PFLU_RS26565 -1.8 -1.7 rRNA maturation RNase YbeY compare
PFLU_RS24095 -1.7 -2.8 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS04315 -1.7 -2.9 rod shape-determining protein MreD compare
PFLU_RS04715 -1.7 -5.0 D-alanine--D-alanine ligase compare
PFLU_RS25640 -1.7 -9.5 ketol-acid reductoisomerase compare
PFLU_RS04325 -1.7 -11.9 ribonuclease G compare
PFLU_RS07650 -1.7 -10.7 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS18655 -1.7 -2.4 NADH-quinone oxidoreductase subunit J compare
PFLU_RS03980 -1.7 -6.4 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS02370 -1.7 -7.9 glycosyltransferase compare
PFLU_RS01875 -1.7 -1.2 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS25815 -1.7 -1.7 transcription termination/antitermination protein NusA compare
PFLU_RS24090 -1.6 -3.4 Holliday junction branch migration protein RuvA compare
PFLU_RS04650 -1.6 -11.0 ABC transporter substrate-binding protein compare
PFLU_RS27305 -1.6 -5.7 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS27635 -1.6 -6.7 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS05655 -1.6 -2.3 DeoR/GlpR family transcriptional regulator compare
PFLU_RS03535 -1.6 -2.0 YscO family type III secretion system apparatus protein compare
PFLU_RS24475 -1.5 -11.5 AmpG family muropeptide MFS transporter compare
PFLU_RS20520 -1.5 -7.4 colicin V production protein CvpA compare
PFLU_RS27370 -1.5 -8.3 anthranilate phosphoribosyltransferase compare
PFLU_RS22070 -1.5 -3.0 phosphoribosylglycinamide formyltransferase compare
PFLU_RS15005 -1.5 -1.6 hypothetical protein compare
PFLU_RS28195 -1.5 -8.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS07225 -1.5 -9.3 L-aspartate oxidase compare
PFLU_RS02460 -1.5 -7.7 alpha/beta fold hydrolase compare
PFLU_RS18620 -1.5 -3.9 NADH-quinone oxidoreductase subunit B compare
PFLU_RS08160 -1.4 -5.7 sugar transferase compare
PFLU_RS24785 -1.4 -7.3 outer membrane protein assembly factor BamB compare
PFLU_RS05885 -1.4 -4.7 recombinase RecA compare
PFLU_RS23590 -1.4 -1.3 gluconokinase compare
PFLU_RS20285 -1.4 -5.2 MerR family transcriptional regulator compare
PFLU_RS21300 -1.4 -3.9 cysteine hydrolase compare
PFLU_RS05965 -1.4 -1.5 hypothetical protein compare
PFLU_RS06555 -1.4 -7.2 OmpA family protein compare
PFLU_RS23240 -1.4 -8.4 magnesium transporter compare
PFLU_RS27630 -1.4 -3.6 dethiobiotin synthase compare
PFLU_RS29065 -1.4 -1.0 amino acid ABC transporter ATP-binding protein compare
PFLU_RS23220 -1.4 -2.7 tRNA-Arg compare
PFLU_RS21900 -1.3 -2.9 hypothetical protein compare
PFLU_RS13045 -1.3 -5.1 AAA domain-containing protein compare
PFLU_RS05385 -1.3 -8.9 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase compare
PFLU_RS26635 -1.3 -5.4 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS24335 -1.3 -7.9 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS27265 -1.3 -2.3 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor compare
PFLU_RS17525 -1.3 -2.6 NUDIX domain-containing protein compare
PFLU_RS27620 -1.3 -9.3 acyl-CoA dehydrogenase compare
PFLU_RS24790 -1.3 -3.7 tetratricopeptide repeat protein compare
PFLU_RS20015 -1.3 -2.0 transporter compare
PFLU_RS21060 -1.3 -3.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS25740 -1.3 -4.7 polynucleotide adenylyltransferase PcnB compare
PFLU_RS28320 -1.3 -2.0 glutathione synthase compare
PFLU_RS05250 -1.3 -3.7 elongation factor 4 compare
PFLU_RS31445 -1.3 -3.3 colicin immunity protein compare
PFLU_RS23130 -1.3 -5.5 response regulator transcription factor compare
PFLU_RS18675 -1.2 -2.4 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS30855 -1.2 -3.2 MerR family transcriptional regulator compare
PFLU_RS28270 -1.2 -2.7 triphosphoribosyl-dephospho-CoA synthase compare
PFLU_RS18885 -1.2 -1.7 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS24255 -1.2 -6.9 pyruvate kinase compare
PFLU_RS28690 -1.2 -7.8 FAD-binding oxidoreductase compare
PFLU_RS15410 -1.2 -2.1 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS03610 -1.2 -4.5 redox-regulated ATPase YchF compare
PFLU_RS05590 -1.2 -5.3 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
PFLU_RS08655 -1.2 -1.4 heme ABC transporter permease compare
PFLU_RS31710 -1.2 -1.8 hypothetical protein compare
PFLU_RS00210 -1.2 -1.1 OsmC family protein compare
PFLU_RS07320 -1.2 -3.6 hypothetical protein compare
PFLU_RS01685 -1.2 -3.0 nitrogen regulation protein NR(I) compare
PFLU_RS02455 -1.2 -2.0 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS07810 -1.2 -8.0 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS02000 -1.2 -10.1 penicillin-binding protein 1A compare
PFLU_RS07670 -1.2 -5.1 hypothetical protein compare
PFLU_RS19555 -1.2 -1.5 histidine phosphatase family protein compare
PFLU_RS22725 -1.2 -2.5 transcriptional regulator compare
PFLU_RS04415 -1.2 -2.6 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS23235 -1.2 -2.6 Arc family DNA-binding protein compare
PFLU_RS28325 -1.2 -5.0 energy transducer TonB compare
PFLU_RS01320 -1.2 -6.2 phosphoenolpyruvate carboxykinase compare
PFLU_RS00870 -1.2 -1.1 hypothetical protein compare
PFLU_RS02040 -1.2 -3.3 hypothetical protein compare
PFLU_RS20715 -1.1 -1.9 iron ABC transporter permease compare
PFLU_RS18670 -1.1 -1.7 NADH-quinone oxidoreductase subunit M compare
PFLU_RS18665 -1.1 -3.0 NADH-quinone oxidoreductase subunit L compare
PFLU_RS15610 -1.1 -3.3 helix-turn-helix transcriptional regulator compare
PFLU_RS04075 -1.1 -1.3 hypothetical protein compare
PFLU_RS29745 -1.1 -2.5 response regulator compare
PFLU_RS01650 -1.1 -4.7 murein hydrolase activator EnvC compare
PFLU_RS14825 -1.1 -6.2 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare
PFLU_RS05610 -1.1 -5.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS23295 -1.1 -5.2 N-succinylarginine dihydrolase compare
PFLU_RS29275 -1.1 -3.7 DUF484 family protein compare
PFLU_RS24130 -1.1 -2.2 protein SlyX compare
PFLU_RS04660 -1.1 -3.9 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS01665 -1.1 -1.3 glutaredoxin 3 compare
PFLU_RS23545 -1.1 -2.6 SRPBCC family protein compare
PFLU_RS31800 -1.1 -0.7 hypothetical protein compare
PFLU_RS29090 -1.1 -4.9 exopolyphosphatase compare
PFLU_RS04220 -1.1 -4.6 FadR family transcriptional regulator compare
PFLU_RS01610 -1.1 -6.3 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS29280 -1.1 -4.5 tyrosine recombinase XerC compare
PFLU_RS00465 -1.1 -6.2 spore maturation protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in nitrogen source experiments

For nitrogen source D-Glucose across organisms