Experiment set3IT093 for Shewanella loihica PV-4

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
Shew_0296 +3.0 6.1 heat shock protein Hsp20 (RefSeq) compare
Shew_1601 +2.4 7.2 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_2572 +2.2 13.7 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_1058 +2.2 8.2 holo-acyl-carrier-protein synthase (RefSeq) compare
Shew_2049 +2.1 10.7 DNA-binding transcriptional regulator HexR (RefSeq) compare
Shew_1602 +2.1 8.6 malonyl CoA-acyl carrier protein transacylase (RefSeq) compare
Shew_1298 guaA +1.8 12.1 bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq) compare
Shew_0755 +1.7 9.4 fructose-1,6-bisphosphate aldolase (RefSeq) compare
Shew_0728 +1.6 15.3 dihydroorotase (RefSeq) compare
Shew_2642 +1.6 5.7 flavodoxin (RefSeq) compare
Shew_0383 +1.6 9.7 malate dehydrogenase (RefSeq) compare
Shew_3487 pyrE +1.6 9.7 orotate phosphoribosyltransferase (RefSeq) compare
Shew_1341 +1.5 7.4 anti-sigma-28 factor, FlgM (RefSeq) compare
Shew_1563 +1.5 10.8 isocitrate dehydrogenase, NADP-dependent (RefSeq) compare
Shew_1013 +1.5 14.1 aspartate carbamoyltransferase (RefSeq) compare
Shew_1224 +1.5 12.0 sodium:dicarboxylate symporter (RefSeq) compare
Shew_3660 +1.4 13.2 glutathione reductase (RefSeq) compare
Shew_2409 +1.4 4.3 short chain dehydrogenase (RefSeq) compare
Shew_3681 +1.4 11.8 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_2174 +1.4 3.1 fatty acid metabolism regulator (RefSeq) compare
Shew_3682 +1.3 9.6 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_1202 +1.3 8.9 (p)ppGpp synthetase I, SpoT/RelA (RefSeq) compare
Shew_1810 +1.3 8.3 dihydroorotate dehydrogenase 2 (RefSeq) compare
Shew_2906 +1.3 2.5 hypothetical protein (RefSeq) compare
Shew_1819 +1.3 4.1 GntR family transcriptional regulator (RefSeq) compare
Shew_3442 +1.3 2.0 hypothetical protein (RefSeq) compare
Shew_3410 +1.2 9.3 permease (RefSeq) compare
Shew_2668 +1.2 5.7 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_0421 +1.2 1.6 phage shock protein C, PspC (RefSeq) compare
Shew_1713 +1.2 2.1 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_1769 +1.2 1.8 NapD family protein (RefSeq) compare
Shew_2469 +1.2 1.3 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_0833 +1.2 1.9 hypoxanthine-guanine phosphoribosyltransferase (RefSeq) compare
Shew_3710 tdh +1.1 7.1 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_0799 +1.1 3.6 MarR family transcriptional regulator (RefSeq) compare
Shew_0316 +1.1 4.4 protein of unknown function DUF513, hemX (RefSeq) compare
Shew_3499 +1.0 5.6 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) compare
Shew_3708 +1.0 5.6 TetR family transcriptional regulator (RefSeq) compare
Shew_0024 +1.0 1.4 ArsR family transcriptional regulator (RefSeq) compare
Shew_2839 +1.0 9.2 carbamoyl phosphate synthase small subunit (RefSeq) compare
Shew_1865 +1.0 5.6 phosphoenolpyruvate-protein phosphotransferase (RefSeq) compare
Shew_1092 +1.0 6.3 amino acid carrier protein (RefSeq) compare
Shew_3295 +1.0 4.3 AFG1 family ATPase (RefSeq) compare
Shew_1705 +1.0 2.1 hypothetical protein (RefSeq) compare
Shew_0534 +1.0 3.1 major facilitator transporter (RefSeq) compare
Shew_2000 +1.0 1.7 glyceraldehyde-3-phosphate dehydrogenase (RefSeq) compare
Shew_0301 +1.0 1.5 AsnC family transcriptional regulator (RefSeq) compare
Shew_3336 +1.0 1.5 MarR family transcriptional regulator (RefSeq) compare
Shew_3063 +1.0 1.7 glycine cleavage system protein H (RefSeq) compare
Shew_3388 +1.0 0.9 hypothetical protein (RefSeq) compare
Shew_3378 +0.9 1.7 Sec-independent protein translocase, TatC subunit (RefSeq) compare
Shew_3709 +0.9 7.9 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_3617 +0.9 1.1 general secretion pathway protein F (RefSeq) compare
Shew_3054 +0.9 0.9 hypothetical protein (RefSeq) compare
Shew_3500 +0.9 2.0 putative endoribonuclease L-PSP (RefSeq) compare
Shew_2558 +0.9 2.9 1,4-dihydroxy-2-naphthoate octaprenyltransferase (RefSeq) compare
Shew_2838 carB +0.9 6.4 carbamoyl phosphate synthase large subunit (RefSeq) compare
Shew_0763 +0.9 4.7 putative PAS/PAC sensor protein (RefSeq) compare
Shew_1714 +0.9 1.6 alpha/beta hydrolase fold (RefSeq) compare
Shew_3522 +0.9 2.1 hypothetical protein (RefSeq) compare
Shew_R0033 +0.9 1.6 tRNA-Arg (RefSeq) compare
Shew_2666 +0.9 5.7 omega-3 polyunsaturated fatty acid synthase PfaB (RefSeq) compare
Shew_3273 +0.9 3.8 hypothetical protein (RefSeq) compare
Shew_1920 +0.9 3.0 alpha/beta hydrolase fold (RefSeq) compare
Shew_2573 +0.8 5.9 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare
Shew_2664 +0.8 2.7 transcriptional regulator, putative (RefSeq) compare
Shew_2665 +0.8 6.7 beta-ketoacyl synthase (RefSeq) compare
Shew_2105 +0.8 0.8 methylated-DNA-(protein)-cysteine S-methyltransferase (RefSeq) compare
Shew_2022 +0.8 0.8 recombination factor protein RarA (RefSeq) compare
Shew_2667 +0.8 5.6 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq) compare
Shew_3271 +0.8 4.5 galactokinase (RefSeq) compare
Shew_3377 +0.8 1.0 twin-arginine translocation protein, TatB subunit (RefSeq) compare
Shew_0854 +0.7 2.3 hypothetical protein (RefSeq) compare
Shew_2320 +0.7 4.9 RNA methyltransferase (RefSeq) compare
Shew_1080 +0.7 2.0 homoserine kinase (RefSeq) compare
Shew_1150 +0.7 2.5 transmembrane pair domain-containing protein (RefSeq) compare
Shew_3176 +0.7 1.2 regulatory protein GntR, HTH (RefSeq) compare
Shew_2026 +0.7 2.2 alanine dehydrogenase (RefSeq) compare
Shew_1078 +0.7 5.4 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_R0076 +0.7 1.1 tRNA-Asn (RefSeq) compare
Shew_1428 +0.7 1.7 fructokinase (RefSeq) compare
Shew_3423 +0.7 1.3 anti-RNA polymerase sigma 70 factor (RefSeq) compare
Shew_2115 +0.7 4.3 lytic transglycosylase, catalytic (RefSeq) compare
Shew_2073 +0.7 0.9 lactoylglutathione lyase (RefSeq) compare
Shew_0594 +0.7 2.4 hypothetical protein (RefSeq) compare
Shew_2740 +0.7 0.7 YfaZ family protein (RefSeq) compare
Shew_3225 +0.7 4.1 glutathione synthetase (RefSeq) compare
Shew_1616 +0.7 0.9 hypothetical protein (RefSeq) compare
Shew_1912 +0.7 1.1 deoxyguanosinetriphosphate triphosphohydrolase-like protein (RefSeq) compare
Shew_0546 +0.7 2.2 hypothetical protein (RefSeq) compare
Shew_2072 +0.7 1.2 endonuclease III (RefSeq) compare
Shew_2114 +0.6 2.7 hydroxyacylglutathione hydrolase (RefSeq) compare
Shew_0966 +0.6 1.2 beta alanine--pyruvate transaminase (RefSeq) compare
Shew_1683 +0.6 1.4 hypothetical protein (RefSeq) compare
Shew_2571 +0.6 5.2 propionyl-CoA carboxylase (RefSeq) compare
Shew_0097 +0.6 3.1 two component transcriptional regulator (RefSeq) compare
Shew_1227 +0.6 1.5 glutamate--cysteine ligase (RefSeq) compare
Shew_0091 +0.6 2.4 molybdopterin biosynthesis MoaE (RefSeq) compare
Shew_1820 prpB +0.6 3.2 2-methylisocitrate lyase (RefSeq) compare
Shew_2917 +0.6 1.2 hypothetical protein (RefSeq) compare
Shew_0098 +0.6 4.5 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_1050 +0.6 4.4 sigma E regulatory protein, MucB/RseB (RefSeq) compare
Shew_1146 +0.6 2.8 hypothetical protein (RefSeq) compare
Shew_1432 +0.6 1.2 ferredoxin-type protein NapF (RefSeq) compare
Shew_3716 +0.6 3.0 cytochrome c, class I (RefSeq) compare
Shew_3189 +0.6 3.4 hypothetical protein (RefSeq) compare
Shew_2847 proA +0.6 2.9 gamma-glutamyl phosphate reductase (RefSeq) compare
Shew_1386 +0.6 1.6 CheA signal transduction histidine kinase (RefSeq) compare
Shew_3339 +0.6 1.4 glutathione-dependent formaldehyde-activating, GFA (RefSeq) compare
Shew_1461 +0.6 1.8 zinc carboxypeptidase-related protein (RefSeq) compare
Shew_2730 +0.6 1.1 glutathione S-transferase domain-containing protein (RefSeq) compare
Shew_2349 +0.6 2.0 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_1518 +0.6 1.2 hypothetical protein (RefSeq) compare
Shew_1300 +0.6 1.7 lytic transglycosylase, catalytic (RefSeq) compare
Shew_3695 +0.6 0.9 cytidyltransferase-like protein (RefSeq) compare
Shew_1807 +0.6 1.9 BNR repeat-containing protein (RefSeq) compare
Shew_2416 +0.6 0.9 chorismate synthase (RefSeq) compare
Shew_0828 +0.6 0.7 LysR family transcriptional regulator (RefSeq) compare
Shew_0738 +0.6 0.5 NTPase (RefSeq) compare
Shew_2795 +0.6 3.4 xanthine/uracil/vitamin C permease (RefSeq) compare
Shew_1530 +0.6 1.7 porin (RefSeq) compare
Shew_2725 +0.6 1.5 ribokinase-like domain-containing protein (RefSeq) compare
Shew_3049 +0.6 1.4 major facilitator transporter (RefSeq) compare
Shew_1437 +0.6 3.8 transcriptional regulator, TyrR (RefSeq) compare
Shew_0762 +0.6 1.6 hypothetical protein (RefSeq) compare
Shew_0842 +0.6 1.0 two component LuxR family transcriptional regulator (RefSeq) compare
Shew_1932 cls +0.6 3.7 cardiolipin synthetase (RefSeq) compare
Shew_1085 +0.6 1.1 response regulator receiver protein (RefSeq) compare
Shew_2228 +0.6 2.8 inosine kinase (RefSeq) compare
Shew_3772 +0.6 0.9 thioesterase superfamily protein (RefSeq) compare
Shew_3636 +0.6 1.7 transcription elongation factor GreB (RefSeq) compare
Shew_0944 +0.5 1.3 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_1431 +0.5 1.3 hypothetical protein (RefSeq) compare
Shew_3430 +0.5 1.2 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq) compare
Shew_1445 +0.5 0.5 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), small permease component (from data) compare
Shew_2422 +0.5 1.2 hypothetical protein (RefSeq) compare
Shew_1584 +0.5 3.4 nucleoside recognition domain-containing protein (RefSeq) compare
Shew_2565 +0.5 1.3 hypothetical protein (RefSeq) compare
Shew_1682 +0.5 1.1 ribonuclease H (RefSeq) compare
Shew_2556 +0.5 1.8 acyl-CoA thioesterase II (RefSeq) compare
Shew_0450 +0.5 3.0 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq) compare
Shew_1994 +0.5 1.0 universal stress protein UspE (RefSeq) compare
Shew_1867 +0.5 2.0 hypothetical protein (RefSeq) compare
Shew_1186 +0.5 1.6 transcriptional regulator NrdR (RefSeq) compare
Shew_2656 +0.5 2.2 4'-phosphopantetheinyl transferase (RefSeq) compare
Shew_2167 +0.5 1.2 hypothetical protein (RefSeq) compare
Shew_2147 +0.5 0.8 hypothetical protein (RefSeq) compare
Shew_3664 +0.5 3.7 alpha-L-glutamate ligase (RefSeq) compare
Shew_2910 +0.5 0.7 hypothetical protein (RefSeq) compare
Shew_0342 +0.5 2.6 hypothetical protein (RefSeq) compare
Shew_0911 +0.5 1.6 hypothetical protein (RefSeq) compare
Shew_3267 +0.5 1.7 sodium/hydrogen exchanger (RefSeq) compare
Shew_1792 +0.5 1.2 OmpA/MotB domain-containing protein (RefSeq) compare
Shew_2711 +0.5 1.0 AraC family transcriptional regulator (RefSeq) compare
Shew_3599 +0.5 3.1 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase (RefSeq) compare
Shew_0352 +0.5 1.4 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) compare
Shew_2895 +0.5 2.5 2-dehydropantoate 2-reductase (RefSeq) compare
Shew_1859 +0.5 0.5 carbonate dehydratase (RefSeq) compare
Shew_0708 +0.5 1.7 hypothetical protein (RefSeq) compare
Shew_2140 +0.5 1.5 hypothetical protein (RefSeq) compare
Shew_3364 +0.5 1.3 acetyl-CoA carboxylase, biotin carboxyl carrier protein (RefSeq) compare
Shew_1359 +0.5 1.7 flagellar hook-associated 2 domain-containing protein (RefSeq) compare
Shew_2561 +0.5 3.5 6-phosphogluconate dehydrogenase (RefSeq) compare
Shew_0945 +0.5 1.9 hypothetical protein (RefSeq) compare
Shew_1282 +0.5 1.5 hypothetical protein (RefSeq) compare
Shew_0621 +0.5 1.3 hypothetical protein (RefSeq) compare
Shew_2204 +0.5 0.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein (RefSeq) compare
Shew_0618 +0.5 0.7 hypothetical protein (RefSeq) compare
Shew_3600 +0.5 2.6 alpha/beta hydrolase fold (RefSeq) compare
Shew_2237 +0.5 0.8 hypothetical protein (RefSeq) compare
Shew_0265 +0.5 1.6 DSBA oxidoreductase (RefSeq) compare
Shew_1574 +0.5 2.2 ATP-binding Mrp/Nbp35 family protein (RefSeq) compare
Shew_1974 +0.5 1.2 hypothetical protein (RefSeq) compare
Shew_3814 +0.4 3.4 naphthoate synthase (RefSeq) compare
Shew_1812 +0.4 2.7 23S rRNA m(2)G2445 methyltransferase (RefSeq) compare
Shew_3080 +0.4 1.4 thiol:disulfide interchange protein, putative (RefSeq) compare
Shew_0640 +0.4 0.8 TPR repeat-containing protein (RefSeq) compare
Shew_3404 +0.4 0.5 NosL family protein (RefSeq) compare
Shew_1878 +0.4 0.8 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_2919 +0.4 1.1 translation-associated GTPase (RefSeq) compare
Shew_3324 +0.4 1.2 hypothetical protein (RefSeq) compare
Shew_2584 +0.4 3.0 electron transfer flavoprotein beta-subunit (RefSeq) compare
Shew_1357 +0.4 3.0 flagellin domain-containing protein (RefSeq) compare
Shew_3131 +0.4 1.9 poly(A) polymerase (RefSeq) compare
Shew_2171 +0.4 1.5 peptidase T2, asparaginase 2 (RefSeq) compare
Shew_0964 +0.4 1.4 protein of unknown function DUF861, cupin_3 (RefSeq) compare
Shew_0537 +0.4 0.6 hypothetical protein (RefSeq) compare
Shew_2059 +0.4 1.8 hypothetical protein (RefSeq) compare
Shew_3602 +0.4 2.8 O-succinylbenzoate-CoA ligase (RefSeq) compare
Shew_1407 +0.4 3.2 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_3631 +0.4 1.5 hypothetical protein (RefSeq) compare
Shew_1203 mazG +0.4 2.1 nucleoside triphosphate pyrophosphohydrolase (RefSeq) compare
Shew_3389 +0.4 1.1 hypothetical protein (RefSeq) compare
Shew_3546 +0.4 1.3 hypothetical protein (RefSeq) compare
Shew_0615 +0.4 2.9 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (RefSeq) compare
Shew_2785 +0.4 0.5 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) compare
Shew_0759 +0.4 1.4 cytochrome c, putative (RefSeq) compare
Shew_0494 +0.4 3.0 hypothetical protein (RefSeq) compare
Shew_3488 +0.4 1.1 ribonuclease PH (RefSeq) compare
Shew_0794 +0.4 1.4 diguanylate cyclase (RefSeq) compare


Specific Phenotypes

None in this experiment

For Shewanella loihica PV-4 in lb experiments