Experiment set3IT093 for Dyella japonica UNC79MFTsu3.2

Compare to:

D-Glucosamine Hydrochloride nitrogen source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS15945 -8.7 -6.0 dihydroxy-acid dehydratase compare
ABZR86_RS09635 -7.9 -6.9 phosphoglycerate dehydrogenase compare
ABZR86_RS15980 -7.7 -5.4 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS06705 -6.9 -6.7 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS08340 -6.8 -6.6 adenylosuccinate synthase compare
ABZR86_RS08250 -6.6 -4.5 phosphate signaling complex protein PhoU compare
ABZR86_RS14700 -6.4 -6.2 glucose-6-phosphate dehydrogenase compare
ABZR86_RS02230 -6.3 -5.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS15940 -6.3 -12.3 ketol-acid reductoisomerase compare
ABZR86_RS06715 -6.1 -7.7 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS10830 -6.1 -4.2 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS10475 -6.0 -6.3 shikimate kinase compare
ABZR86_RS10715 -6.0 -17.9 serine hydroxymethyltransferase compare
ABZR86_RS12070 -5.9 -6.7 anthranilate phosphoribosyltransferase compare
ABZR86_RS08730 -5.9 -9.9 N-acetylornithine carbamoyltransferase compare
ABZR86_RS15460 -5.8 -4.0 type I glutamate--ammonia ligase compare
ABZR86_RS00660 -5.8 -6.9 recombinase RecA compare
ABZR86_RS08000 -5.7 -19.3 tryptophan synthase subunit beta compare
ABZR86_RS06730 -5.6 -9.3 histidinol dehydrogenase compare
ABZR86_RS08695 -5.6 -12.7 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
ABZR86_RS10710 -5.6 -3.8 transcriptional regulator NrdR compare
ABZR86_RS07665 -5.5 -3.8 exodeoxyribonuclease V subunit beta compare
ABZR86_RS02220 -5.5 -19.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS18675 -5.4 -7.4 phosphoglycerate kinase compare
ABZR86_RS08010 -5.4 -6.4 phosphoribosylanthranilate isomerase compare
ABZR86_RS15955 -5.4 -6.7 3-isopropylmalate dehydratase small subunit compare
ABZR86_RS08680 -5.4 -10.0 glutamate-5-semialdehyde dehydrogenase compare
ABZR86_RS08700 -5.4 -8.2 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS10215 -5.3 -8.5 inositol monophosphatase family protein compare
ABZR86_RS08710 -5.3 -9.4 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS19025 -5.2 -5.9 homoserine O-succinyltransferase compare
ABZR86_RS15950 -5.2 -8.5 3-isopropylmalate dehydrogenase compare
ABZR86_RS14100 -5.2 -10.5 DNA adenine methylase compare
ABZR86_RS16795 -5.2 -20.2 glutamate synthase large subunit compare
ABZR86_RS06710 -5.1 -6.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS15935 -5.1 -12.9 biosynthetic-type acetolactate synthase large subunit compare
ABZR86_RS19560 -5.1 -5.8 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) compare
ABZR86_RS15960 -5.1 -10.8 3-isopropylmalate dehydratase large subunit compare
ABZR86_RS06275 -5.0 -4.4 DUF6165 family protein compare
ABZR86_RS15020 -5.0 -3.4 DUF484 family protein compare
ABZR86_RS08685 -5.0 -8.7 glutamate 5-kinase compare
ABZR86_RS16045 -5.0 -8.5 N-acetylglucosamine-6-phosphate deacetylase compare
ABZR86_RS14690 -5.0 -8.9 phosphogluconate dehydratase compare
ABZR86_RS05885 -4.9 -9.6 LysR substrate-binding domain-containing protein compare
ABZR86_RS21575 -4.8 -10.3 [protein-PII] uridylyltransferase compare
ABZR86_RS08715 -4.8 -12.5 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
ABZR86_RS14985 -4.8 -9.7 shikimate dehydrogenase compare
ABZR86_RS00830 -4.8 -9.8 glucose-6-phosphate isomerase compare
ABZR86_RS02815 -4.8 -16.6 asparagine synthase B compare
ABZR86_RS19030 -4.8 -7.5 cystathionine gamma-synthase compare
ABZR86_RS02890 -4.8 -8.1 sulfate ABC transporter permease subunit CysW compare
ABZR86_RS12005 -4.8 -3.3 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS11570 -4.7 -8.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR86_RS06720 -4.7 -5.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS16800 -4.7 -14.0 FAD-dependent oxidoreductase compare
ABZR86_RS15975 -4.7 -12.4 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS10840 -4.6 -4.6 Holliday junction branch migration protein RuvA compare
ABZR86_RS12885 -4.6 -3.2 magnesium-translocating P-type ATPase compare
ABZR86_RS16050 -4.6 -12.1 SIS domain-containing protein compare
ABZR86_RS18655 -4.6 -8.2 transketolase compare
ABZR86_RS06260 -4.5 -5.3 MBL fold metallo-hydrolase compare
ABZR86_RS06000 -4.5 -9.2 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS12790 -4.5 -3.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
ABZR86_RS15965 -4.4 -7.4 branched-chain amino acid transaminase compare
ABZR86_RS00615 -4.3 -10.0 catalase/peroxidase HPI compare
ABZR86_RS13880 -4.3 -4.1 peptide deformylase compare
ABZR86_RS12435 -4.3 -12.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS09885 -4.3 -2.9 trypsin-like peptidase domain-containing protein compare
ABZR86_RS08705 -4.3 -9.9 N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (from data) compare
ABZR86_RS07660 -4.3 -6.6 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS05995 -4.3 -15.4 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS15970 -4.2 -8.5 2-isopropylmalate synthase compare
ABZR86_RS05905 -4.2 -8.2 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABZR86_RS17085 -4.2 -8.1 type II 3-dehydroquinate dehydratase compare
ABZR86_RS02885 -4.2 -11.6 sulfate ABC transporter permease subunit CysT compare
ABZR86_RS12215 -4.1 -5.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS11840 -4.1 -10.9 ATP-dependent DNA helicase RecG compare
ABZR86_RS06775 -4.1 -16.4 amidophosphoribosyltransferase compare
ABZR86_RS05875 -4.1 -6.1 cysteine synthase A compare
ABZR86_RS08040 -4.1 -9.2 chorismate synthase compare
ABZR86_RS17180 -4.0 -11.9 glycosyltransferase compare
ABZR86_RS11555 -4.0 -10.5 phosphoenolpyruvate carboxylase compare
ABZR86_RS15315 -4.0 -10.2 phenylalanine 4-monooxygenase compare
ABZR86_RS06725 -4.0 -8.6 histidinol-phosphate transaminase compare
ABZR86_RS06700 -4.0 -5.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABZR86_RS02225 -3.9 -8.0 prephenate dehydratase compare
ABZR86_RS10425 -3.9 -2.6 pyrroline-5-carboxylate reductase compare
ABZR86_RS13515 -3.9 -6.0 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS18615 -3.9 -4.6 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS05900 -3.8 -11.3 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABZR86_RS19800 -3.8 -8.9 RNase adapter RapZ compare
ABZR86_RS00570 -3.8 -4.6 acetoacetyl-CoA reductase compare
ABZR86_RS12065 -3.8 -7.1 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS06630 -3.8 -4.5 phosphopyruvate hydratase compare
ABZR86_RS19860 -3.7 -9.5 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS08905 -3.7 -10.3 carbonate dehydratase compare
ABZR86_RS13850 -3.7 -5.7 phosphoribosylamine--glycine ligase compare
ABZR86_RS15985 -3.6 -9.0 homoserine dehydrogenase compare
ABZR86_RS05890 -3.6 -11.8 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase compare
ABZR86_RS15515 -3.6 -5.4 nitrogen regulation protein NR(I) compare
ABZR86_RS07590 -3.6 -12.9 methionine synthase compare
ABZR86_RS02895 -3.6 -10.3 ABC transporter ATP-binding protein compare
ABZR86_RS19235 -3.5 -4.2 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS13245 -3.5 -16.2 DEAD/DEAH box helicase compare
ABZR86_RS05550 -3.5 -5.3 lipopolysaccharide assembly protein LapB compare
ABZR86_RS02880 -3.3 -10.6 sulfate ABC transporter substrate-binding protein compare
ABZR86_RS02245 -3.3 -15.8 excinuclease ABC subunit UvrC compare
ABZR86_RS05895 -3.3 -12.5 phosphoadenylyl-sulfate reductase compare
ABZR86_RS18775 -3.3 -3.2 nucleotidyltransferase family protein compare
ABZR86_RS07585 -3.3 -11.3 homocysteine S-methyltransferase family protein compare
ABZR86_RS15025 -3.2 -5.8 tyrosine recombinase XerC compare
ABZR86_RS07180 -3.2 -8.2 RNA polymerase sigma factor RpoE compare
ABZR86_RS12180 -3.2 -13.8 anthranilate synthase component I compare
ABZR86_RS15640 -3.2 -2.9 orotate phosphoribosyltransferase compare
ABZR86_RS11845 -3.2 -10.0 RidA family protein compare
ABZR86_RS12780 -3.1 -5.7 pteridine reductase compare
ABZR86_RS00910 -3.1 -17.4 excinuclease ABC subunit UvrA compare
ABZR86_RS16965 -3.1 -11.0 DNA helicase II compare
ABZR86_RS05820 -3.1 -5.9 GntR family transcriptional regulator compare
ABZR86_RS19815 -3.1 -14.5 RNA polymerase factor sigma-54 compare
ABZR86_RS09750 -3.1 -18.7 excinuclease ABC subunit UvrB compare
ABZR86_RS09845 -3.0 -11.1 DUF1631 domain-containing protein compare
ABZR86_RS18880 -3.0 -7.8 glycine cleavage system protein GcvH compare
ABZR86_RS10160 -3.0 -11.2 response regulator transcription factor compare
ABZR86_RS11085 -3.0 -9.6 ATP-binding protein compare
ABZR86_RS16610 -3.0 -6.3 hypothetical protein compare
ABZR86_RS13920 -3.0 -12.2 CDP-glycerol glycerophosphotransferase family protein compare
ABZR86_RS08305 -2.9 -14.0 aminomethyl-transferring glycine dehydrogenase compare
ABZR86_RS07015 -2.9 -9.4 AraC family transcriptional regulator compare
ABZR86_RS02450 -2.9 -3.7 hypothetical protein compare
ABZR86_RS05700 -2.8 -4.7 SsrA-binding protein SmpB compare
ABZR86_RS20775 -2.8 -6.0 TetR/AcrR family transcriptional regulator compare
ABZR86_RS18780 -2.8 -3.8 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR86_RS00390 -2.8 -6.6 3-deoxy-7-phosphoheptulonate synthase compare
ABZR86_RS19865 -2.8 -4.8 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS21020 -2.8 -10.1 ATP-binding protein compare
ABZR86_RS11075 -2.8 -12.9 response regulator compare
ABZR86_RS06735 -2.7 -4.3 ATP phosphoribosyltransferase compare
ABZR86_RS09935 -2.7 -2.0 DUF4105 domain-containing protein compare
ABZR86_RS05665 -2.7 -7.9 DNA repair protein RecN compare
ABZR86_RS07020 -2.7 -5.4 NAD(P)-dependent alcohol dehydrogenase compare
ABZR86_RS06270 -2.7 -7.1 glycosyltransferase family 9 protein compare
ABZR86_RS02185 -2.6 -9.4 tRNA 2-thiouridine(34) synthase MnmA compare
ABZR86_RS10530 -2.6 -1.9 H-NS histone family protein compare
ABZR86_RS12605 -2.6 -4.5 thioredoxin TrxA compare
ABZR86_RS15330 -2.5 -10.2 TetR/AcrR family transcriptional regulator compare
ABZR86_RS15695 -2.5 -1.9 23S ribosomal RNA compare
ABZR86_RS06030 -2.5 -1.8 transcription termination factor NusA compare
ABZR86_RS10205 -2.4 -7.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS11885 -2.3 -6.0 ATP-binding cassette domain-containing protein compare
ABZR86_RS19795 -2.3 -6.2 PTS sugar transporter subunit IIA compare
ABZR86_RS10480 -2.3 -1.9 3-dehydroquinate synthase compare
ABZR86_RS11880 -2.3 -5.9 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR86_RS08480 -2.3 -6.1 methylisocitrate lyase compare
ABZR86_RS20980 -2.3 -3.3 hypothetical protein compare
ABZR86_RS12410 -2.3 -4.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS19225 -2.3 -4.4 site-specific tyrosine recombinase XerD compare
ABZR86_RS11870 -2.2 -11.2 phospholipid-binding protein MlaC compare
ABZR86_RS13915 -2.2 -11.8 glycosyltransferase family 2 protein compare
ABZR86_RS07320 -2.2 -13.5 endopeptidase La compare
ABZR86_RS18715 -2.2 -6.7 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABZR86_RS07995 -2.2 -7.7 tryptophan synthase subunit alpha compare
ABZR86_RS18875 -2.1 -5.3 glycine cleavage system aminomethyltransferase GcvT compare
ABZR86_RS21345 -2.1 -11.3 GNAT family N-acetyltransferase compare
ABZR86_RS11995 -2.1 -7.3 5-formyltetrahydrofolate cyclo-ligase compare
ABZR86_RS01825 -2.0 -10.9 replication-associated recombination protein A compare
ABZR86_RS06580 -2.0 -2.9 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS08845 -2.0 -9.2 DNA repair protein RadA compare
ABZR86_RS06940 -2.0 -7.4 hypothetical protein compare
ABZR86_RS12200 -1.9 -5.1 ribulose-phosphate 3-epimerase compare
ABZR86_RS06685 -1.9 -8.0 acireductone dioxygenase compare
ABZR86_RS09075 -1.9 -1.6 NrsF family protein compare
ABZR86_RS19715 -1.9 -10.6 Dps family protein compare
ABZR86_RS11875 -1.9 -10.1 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR86_RS07885 -1.8 -6.3 cation diffusion facilitator family transporter compare
ABZR86_RS05690 -1.8 -1.3 RnfH family protein compare
ABZR86_RS09380 -1.8 -5.1 response regulator transcription factor compare
ABZR86_RS02810 -1.8 -2.4 hypothetical protein compare
ABZR86_RS13900 -1.8 -6.1 glycosyltransferase compare
ABZR86_RS18640 -1.8 -8.8 class I fructose-bisphosphate aldolase compare
ABZR86_RS06590 -1.8 -1.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS08430 -1.8 -3.8 2-methylaconitate cis-trans isomerase PrpF compare
ABZR86_RS05860 -1.8 -2.7 adenylosuccinate lyase compare
ABZR86_RS08015 -1.8 -2.1 tRNA pseudouridine(38-40) synthase TruA compare
ABZR86_RS19805 -1.8 -5.6 HPr(Ser) kinase/phosphatase compare
ABZR86_RS21480 -1.8 -5.5 arginase family protein compare
ABZR86_RS02305 -1.7 -1.4 hypothetical protein compare
ABZR86_RS01095 -1.7 -11.7 elongation factor G compare
ABZR86_RS00685 -1.7 -2.1 carbon storage regulator CsrA compare
ABZR86_RS06740 -1.7 -1.9 YerC/YecD family TrpR-related protein compare
ABZR86_RS19785 -1.6 -11.2 phosphoenolpyruvate--protein phosphotransferase compare
ABZR86_RS21435 -1.6 -4.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABZR86_RS14705 -1.6 -7.5 GntR family transcriptional regulator compare
ABZR86_RS07140 -1.6 -6.7 DNA repair protein RecO compare
ABZR86_RS06355 -1.6 -3.7 folate-binding protein YgfZ compare
ABZR86_RS07215 -1.6 -3.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
ABZR86_RS09485 -1.6 -1.5 SUF system Fe-S cluster assembly regulator compare
ABZR86_RS15145 -1.5 -7.9 DNA replication/repair protein RecF compare
ABZR86_RS13910 -1.5 -10.6 glycosyltransferase compare
ABZR86_RS06690 -1.5 -4.5 acireductone synthase compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source D-Glucosamine Hydrochloride in Dyella japonica UNC79MFTsu3.2

For nitrogen source D-Glucosamine Hydrochloride across organisms