Experiment set3IT092 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with MreB Perturbing Compound A22 0.01 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.7 -3.6 peroxidase compare
AO353_03585 -3.4 -5.1 ATP-dependent DNA helicase RuvA compare
AO353_04565 -3.0 -6.0 nucleoid-associated protein compare
AO353_03715 -2.9 -3.3 H-NS histone compare
AO353_11750 -2.6 -3.1 ATPase compare
AO353_13100 -2.6 -2.6 GTPase RsgA compare
AO353_07645 -2.5 -2.1 sarcosine oxidase subunit gamma compare
AO353_15170 -2.2 -3.4 cytochrome D ubiquinol oxidase subunit III compare
AO353_04355 -2.1 -2.4 homoserine dehydrogenase compare
AO353_09240 -2.0 -3.8 acetylglutamate kinase compare
AO353_05690 -2.0 -4.1 SsrA-binding protein compare
AO353_20185 -2.0 -6.2 DNA-binding protein compare
AO353_27650 -2.0 -5.3 cell division protein FtsK compare
AO353_14150 -1.8 -2.1 peptidylprolyl isomerase compare
AO353_00825 -1.8 -4.2 porin compare
AO353_03580 -1.8 -4.1 ATP-dependent DNA helicase RuvB compare
AO353_21625 -1.8 -3.0 Fe/S biogenesis protein NfuA compare
AO353_08975 -1.7 -6.2 heme biosynthesis protein HemY compare
AO353_04810 -1.6 -2.4 hypothetical protein compare
AO353_09320 -1.6 -8.3 ATP-dependent DNA helicase RecG compare
AO353_06045 -1.6 -6.2 exodeoxyribonuclease V subunit beta compare
AO353_08980 -1.6 -3.3 heme biosynthesis operon protein HemX compare
AO353_27855 -1.6 -2.2 MarR family transcriptional regulator compare
AO353_14420 -1.5 -4.2 molecular chaperone DnaK compare
AO353_24595 -1.5 -3.1 hypothetical protein compare
AO353_26285 -1.5 -2.5 hypothetical protein compare
AO353_10930 -1.5 -7.0 DNA polymerase I compare
AO353_23410 -1.5 -2.1 hypothetical protein compare
AO353_18540 -1.5 -2.7 pseudouridine synthase compare
AO353_00610 -1.4 -2.1 cytochrome C oxidase Cbb3 compare
AO353_14220 -1.4 -1.8 ribosomal large subunit pseudouridine synthase D compare
AO353_16805 -1.4 -4.7 recombinase RecA compare
AO353_25925 -1.3 -1.9 hypothetical protein compare
AO353_12350 -1.3 -2.5 preprotein translocase compare
AO353_13140 -1.3 -4.9 tRNA dimethylallyltransferase compare
AO353_05010 -1.3 -2.1 HopJ type III effector protein compare
AO353_05550 -1.3 -5.4 pseudouridine synthase compare
AO353_07355 -1.3 -4.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_08165 -1.3 -2.7 pyrroline-5-carboxylate reductase compare
AO353_06040 -1.3 -3.2 exodeoxyribonuclease V subunit alpha compare
AO353_06495 -1.2 -4.4 gamma-glutamyl phosphate reductase compare
AO353_07140 -1.2 -9.5 peptidase M23 compare
AO353_10500 -1.2 -3.0 acetylornithine aminotransferase compare
AO353_21630 -1.2 -2.5 precorrin-4 C11-methyltransferase compare
AO353_00495 -1.2 -1.7 DNA topoisomerase I compare
AO353_09250 -1.2 -2.7 exodeoxyribonuclease III compare
AO353_12535 -1.1 -3.0 hypothetical protein compare
AO353_12115 -1.1 -2.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_02685 -1.1 -2.5 phosphoribosylglycinamide formyltransferase compare
AO353_12935 -1.1 -3.5 glycosyltransferase compare
AO353_18170 -1.1 -5.4 aspartyl beta-hydroxylase compare
AO353_06455 -1.1 -2.2 D-alanyl-D-alanine carboxypeptidase compare
AO353_10055 -1.1 -7.0 DNA helicase II compare
AO353_11730 -1.1 -6.2 glutamate--cysteine ligase compare
AO353_04175 -1.0 -3.3 glycerol uptake facilitator GlpF compare
AO353_03590 -1.0 -2.5 crossover junction endodeoxyribonuclease RuvC compare
AO353_18135 -1.0 -2.2 hypothetical protein compare
AO353_23785 -1.0 -1.8 hypothetical protein compare
AO353_22520 -1.0 -1.8 hypothetical protein compare
AO353_28700 -1.0 -2.1 hypothetical protein compare
AO353_02630 -1.0 -2.2 5,6-dimethylbenzimidazole synthase compare
AO353_05225 -1.0 -7.6 hypothetical protein compare
AO353_01355 -1.0 -4.8 3-oxoacyl-ACP synthase compare
AO353_07235 -1.0 -5.2 phosphoglycolate phosphatase compare
AO353_02640 -1.0 -1.6 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_27500 -1.0 -1.5 hypothetical protein compare
AO353_10495 -1.0 -2.6 serine hydroxymethyltransferase compare
AO353_06050 -1.0 -4.2 exodeoxyribonuclease V subunit gamma compare
AO353_02250 -0.9 -2.3 chorismate synthase compare
AO353_12930 -0.9 -2.5 GlcNAc-PI de-N-acetylase compare
AO353_11945 -0.9 -1.1 4-oxalocrotonate tautomerase compare
AO353_12070 -0.9 -5.0 imidazoleglycerol-phosphate dehydratase compare
AO353_16530 -0.9 -1.2 ribonuclease HII compare
AO353_05240 -0.9 -1.6 rod shape-determining protein MreD compare
AO353_20410 -0.9 -1.9 hypothetical protein compare
AO353_28535 -0.9 -3.7 AraC family transcriptional regulator compare
AO353_22810 -0.9 -1.3 hypothetical protein compare
AO353_19250 -0.9 -1.3 molybdenum cofactor guanylyltransferase compare
AO353_03410 -0.9 -1.8 chemotaxis protein CheY compare
AO353_08895 -0.9 -3.9 hypothetical protein compare
AO353_12075 -0.9 -4.4 imidazole glycerol phosphate synthase subunit HisH compare
AO353_02515 -0.9 -4.2 recombination-associated protein RdgC compare
AO353_04035 -0.9 -2.7 exclusion suppressor FxsA compare
AO353_25335 -0.9 -1.7 malonate decarboxylase acyl carrier protein compare
AO353_08210 -0.9 -3.5 tRNA (guanine-N7)-methyltransferase compare
AO353_15290 -0.8 -3.9 methyltransferase compare
AO353_21110 -0.8 -1.7 hypothetical protein compare
AO353_17625 -0.8 -4.2 RNA polymerase subunit sigma compare
AO353_08880 -0.8 -1.7 exopolyphosphatase compare
AO353_15885 -0.8 -3.3 Cro/Cl family transcriptional regulator compare
AO353_28815 -0.8 -1.7 hypothetical protein compare
AO353_00835 -0.8 -3.8 transporter compare
AO353_01990 -0.8 -3.9 UDP-N-acetylglucosamine 2-epimerase compare
AO353_02465 -0.8 -1.3 hypothetical protein compare
AO353_28725 -0.8 -2.1 hypothetical protein compare
AO353_23910 -0.8 -1.9 response regulator compare
AO353_02710 -0.8 -5.3 (p)ppGpp synthetase compare
AO353_05420 -0.8 -1.4 peptide chain release factor 3 compare
AO353_22800 -0.8 -1.8 sulfite reductase compare
AO353_09030 -0.8 -1.3 iron donor protein CyaY compare
AO353_25160 -0.8 -2.3 ABC transporter substrate-binding protein compare
AO353_13865 -0.8 -2.1 hypothetical protein compare
AO353_27710 -0.8 -1.1 DNA repair protein compare
AO353_24120 -0.8 -1.6 hypothetical protein compare
AO353_02010 -0.8 -3.4 glycosyl transferase family 1 compare
AO353_14485 -0.8 -0.8 pseudouridine synthase compare
AO353_27415 -0.8 -1.8 hypothetical protein compare
AO353_28960 -0.8 -1.6 Fis family transcriptional regulator compare
AO353_02440 -0.7 -5.2 peptidase S41 compare
AO353_08375 -0.7 -3.3 hypothetical protein compare
AO353_03420 -0.7 -2.7 phosphogluconate dehydratase compare
AO353_14740 -0.7 -2.1 GTP-binding protein compare
AO353_10430 -0.7 -1.8 chromosome partitioning protein ParB compare
AO353_02100 -0.7 -2.4 phosphoglycolate phosphatase compare
AO353_19295 -0.7 -1.2 hypothetical protein compare
AO353_20170 -0.7 -2.7 trigger factor compare
AO353_14115 -0.7 -3.5 gamma-glutamyl kinase compare
AO353_07315 -0.7 -1.5 rRNA methyltransferase compare
AO353_14340 -0.7 -2.0 phospholipid-binding protein compare
AO353_20660 -0.7 -1.7 pseudouridine synthase compare
AO353_07295 -0.7 -5.3 aminoglycoside phosphotransferase compare
AO353_16495 -0.7 -2.9 zinc metallopeptidase RseP compare
AO353_26115 -0.7 -1.1 hypothetical protein compare
AO353_01410 -0.7 -1.5 ribonuclease E compare
AO353_23810 -0.7 -2.5 transcriptional regulator compare
AO353_05510 -0.7 -3.5 N-acetyl-anhydromuranmyl-L-alanine amidase compare
AO353_01615 -0.7 -2.4 pilus assembly protein PilA compare
AO353_24830 -0.7 -2.0 enoyl-CoA hydratase compare
AO353_19490 -0.7 -2.0 Fis family transcriptional regulator compare
AO353_15265 -0.7 -2.8 peptidase compare
AO353_13860 -0.7 -3.1 hypothetical protein compare
AO353_16710 -0.7 -1.5 hypothetical protein compare
AO353_09050 -0.7 -2.1 recombinase XerC compare
AO353_06810 -0.7 -2.5 phage shock protein A compare
AO353_25660 -0.7 -2.1 ABC transporter substrate-binding protein compare
AO353_08910 -0.6 -1.6 hypothetical protein compare
AO353_01015 -0.6 -1.6 hypothetical protein compare
AO353_19750 -0.6 -1.3 diaminopimelate epimerase compare
AO353_15490 -0.6 -1.2 hypothetical protein compare
AO353_27725 -0.6 -1.8 GNAT family acetyltransferase compare
AO353_16375 -0.6 -1.3 hypothetical protein compare
AO353_09315 -0.6 -3.9 LysR family transcriptional regulator compare
AO353_06465 -0.6 -3.5 lytic transglycosylase compare
AO353_07290 -0.6 -3.9 mannose-1-phosphate guanylyltransferase compare
AO353_05415 -0.6 -1.6 hypothetical protein compare
AO353_09945 -0.6 -2.2 LysR family transcriptional regulator compare
AO353_19195 -0.6 -2.3 response regulator compare
AO353_16925 -0.6 -5.0 AmpG family muropeptide MFS transporter compare
AO353_26225 -0.6 -2.6 hypothetical protein compare
AO353_12650 -0.6 -0.9 hypothetical protein compare
AO353_28680 -0.6 -1.5 transposase compare
AO353_08685 -0.6 -3.3 N-acetylglutamate synthase compare
AO353_29165 -0.6 -1.6 fructose-bisphosphate aldolase compare
AO353_23590 -0.6 -1.3 ArsR family transcriptional regulator compare
AO353_28405 -0.6 -2.6 hypothetical protein compare
AO353_04365 -0.6 -2.0 recombinase XerD compare
AO353_23155 -0.6 -2.1 IclR family transcriptional regulator compare
AO353_19265 -0.6 -2.2 hypothetical protein compare
AO353_00605 -0.6 -3.0 cytochrome C oxidase Cbb3 compare
AO353_23405 -0.6 -1.3 hypothetical protein compare
AO353_01435 -0.6 -1.5 protein tyrosine phosphatase compare
AO353_00105 -0.6 -1.0 hypothetical protein compare
AO353_11050 -0.6 -1.8 hypothetical protein compare
AO353_27080 -0.6 -3.4 hypothetical protein compare
AO353_28665 -0.6 -2.3 hypothetical protein compare
AO353_23945 -0.6 -1.3 hypothetical protein compare
AO353_10995 -0.6 -3.7 hypothetical protein compare
AO353_09150 -0.6 -1.3 cytochrome C2 compare
AO353_22075 -0.6 -1.5 hypothetical protein compare
AO353_22980 -0.6 -2.3 hypothetical protein compare
AO353_28320 -0.6 -1.2 aminopeptidase compare
AO353_15270 -0.6 -1.7 phospholipid-binding protein compare
AO353_17945 -0.6 -1.3 cyclic nucleotide-binding protein compare
AO353_07155 -0.6 -2.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_19505 -0.6 -1.7 FAD-dependent oxidoreductase compare
AO353_23280 -0.6 -1.9 hypothetical protein compare
AO353_08610 -0.6 -2.3 hypothetical protein compare
AO353_03120 -0.6 -1.5 hypothetical protein compare
AO353_28970 -0.6 -2.3 hypothetical protein compare
AO353_08115 -0.6 -2.5 energy transducer TonB compare
AO353_20860 -0.6 -1.4 hypothetical protein compare
AO353_23470 -0.5 -2.7 microcin ABC transporter permease compare
AO353_08600 -0.5 -1.8 TetR family transcriptional regulator compare
AO353_02000 -0.5 -1.4 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_20030 -0.5 -2.7 DNA polymerase III compare
AO353_27455 -0.5 -1.9 hypothetical protein compare
AO353_15445 -0.5 -1.7 disulfide bond formation protein B compare
AO353_23660 -0.5 -2.5 hypothetical protein compare
AO353_20390 -0.5 -2.0 rhodanese compare
AO353_01975 -0.5 -2.9 glycosyl transferase compare
AO353_18340 -0.5 -3.1 hypothetical protein compare
AO353_08970 -0.5 -2.8 disulfide bond formation protein B compare
AO353_02225 -0.5 -2.0 LuxR family transcriptional regulator compare
AO353_12915 -0.5 -2.9 carbamoyltransferase compare
AO353_25475 -0.5 -1.8 multidrug resistance protein compare
AO353_20680 -0.5 -1.8 cell division protein compare
AO353_09010 -0.5 -1.6 hypothetical protein compare
AO353_05455 -0.5 -1.9 Fe(II)-dependent oxygenase compare
AO353_15900 -0.5 -1.1 GTP-binding protein compare
AO353_08545 -0.5 -2.1 thiol-disulfide isomerase compare


Specific Phenotypes

For 3 genes in this experiment

For stress MreB Perturbing Compound A22 in Pseudomonas fluorescens FW300-N2E3

For stress MreB Perturbing Compound A22 across organisms