Experiment set3IT092 for Pseudomonas fluorescens FW300-N2E3
LB with MreB Perturbing Compound A22 0.01 mg/ml
Group: stressMedia: LB + MreB Perturbing Compound A22 (0.01 mg/ml)
Culturing: pseudo3_N2E3_ML2, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Jayashree on 6/26/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 957 C1,C2
Specific Phenotypes
For 3 genes in this experiment
For stress MreB Perturbing Compound A22 in Pseudomonas fluorescens FW300-N2E3
For stress MreB Perturbing Compound A22 across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| tRNA processing | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fatty acid biosynthesis
- Purine metabolism
- Pyrimidine metabolism
- Tyrosine metabolism
- Benzoate degradation via hydroxylation
- Phenylalanine, tyrosine and tryptophan biosynthesis
- Nucleotide sugars metabolism
- 1- and 2-Methylnaphthalene degradation
- Benzoate degradation via CoA ligation
- Butanoate metabolism
- Nicotinate and nicotinamide metabolism
- Porphyrin and chlorophyll metabolism
- Limonene and pinene degradation
- Biosynthesis of unsaturated fatty acids
- Biosynthesis of type II polyketide backbone
- Biosynthesis of alkaloids derived from histidine and purine
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| NAD salvage pathway III (to nicotinamide riboside) | 3 | 2 | 1 |
| UTP and CTP dephosphorylation I | 7 | 5 | 2 |
| purine nucleotides degradation II (aerobic) | 11 | 11 | 3 |
| inosine 5'-phosphate degradation | 4 | 4 | 1 |
| guanosine nucleotides degradation III | 4 | 4 | 1 |
| guanosine nucleotides degradation II | 4 | 4 | 1 |
| adenosine nucleotides degradation I | 8 | 7 | 2 |
| purine nucleotides degradation I (plants) | 12 | 10 | 3 |
| guanosine nucleotides degradation I | 4 | 3 | 1 |
| adenosine nucleotides degradation II | 5 | 5 | 1 |
| superpathway of guanosine nucleotides degradation (plants) | 6 | 5 | 1 |
| superpathway of purines degradation in plants | 18 | 14 | 3 |
| ureide biosynthesis | 7 | 6 | 1 |
| tunicamycin biosynthesis | 9 | 2 | 1 |
| NAD salvage (plants) | 11 | 6 | 1 |