Experiment set3IT092 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Urea nitrogen source

200 most important genes:

  gene name fitness t score description  
PFLU_RS01645 -5.9 -8.1 S41 family peptidase compare
PFLU_RS03645 -5.8 -11.8 tetratricopeptide repeat protein compare
PFLU_RS28695 -5.0 -4.9 phosphoglycerate dehydrogenase compare
PFLU_RS14550 -5.0 -5.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS28645 -4.8 -19.3 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS07695 -4.3 -4.2 beta-N-acetylhexosaminidase compare
PFLU_RS12975 -4.3 -4.1 DUF934 domain-containing protein compare
PFLU_RS02490 -4.3 -12.3 phosphoserine phosphatase SerB compare
PFLU_RS24125 -4.1 -2.8 cold-shock protein compare
PFLU_RS04385 -4.1 -12.9 RNase adapter RapZ compare
PFLU_RS29875 -4.0 -17.2 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS29885 -4.0 -12.9 LysR family transcriptional regulator compare
PFLU_RS26545 -4.0 -12.8 sel1 repeat family protein compare
PFLU_RS27365 -4.0 -11.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS29880 -4.0 -15.3 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS22095 -3.9 -22.0 GTP diphosphokinase compare
PFLU_RS25760 -3.9 -13.5 glucose-6-phosphate isomerase compare
PFLU_RS28535 -3.9 -16.7 dihydroxy-acid dehydratase compare
PFLU_RS24485 -3.8 -13.3 hypothetical protein compare
PFLU_RS27440 -3.8 -8.0 nucleotidyltransferase family protein compare
PFLU_RS22740 -3.8 -3.7 phosphoadenylyl-sulfate reductase compare
PFLU_RS02050 -3.7 -18.9 NAD(P)-binding protein compare
PFLU_RS23590 -3.7 -3.7 gluconokinase compare
PFLU_RS04070 -3.7 -3.6 peptide chain release factor 3 compare
PFLU_RS12980 -3.7 -10.3 nitrite/sulfite reductase compare
PFLU_RS18505 -3.7 -10.0 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS01005 -3.7 -1.9 ABC transporter ATP-binding protein compare
PFLU_RS26640 -3.6 -7.4 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS31275 -3.6 -1.8 hypothetical protein compare
PFLU_RS22595 -3.6 -2.5 OmpA family protein compare
PFLU_RS08505 -3.6 -7.2 protease HtpX compare
PFLU_RS00175 -3.6 -7.6 tryptophan synthase subunit alpha compare
PFLU_RS23065 -3.6 -10.9 phosphate acyltransferase PlsX compare
PFLU_RS02365 -3.6 -15.5 glycosyltransferase compare
PFLU_RS00180 -3.6 -8.3 tryptophan synthase subunit beta compare
PFLU_RS25640 -3.6 -13.5 ketol-acid reductoisomerase compare
PFLU_RS04430 -3.6 -4.9 ATP-binding cassette domain-containing protein compare
PFLU_RS21300 -3.5 -7.8 cysteine hydrolase compare
PFLU_RS07650 -3.5 -17.0 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS25225 -3.5 -13.0 disulfide bond formation protein B compare
PFLU_RS02045 -3.4 -24.1 glutamate synthase large subunit compare
PFLU_RS22105 -3.4 -6.1 cysteine synthase CysM compare
PFLU_RS04435 -3.3 -6.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS25750 -3.3 -7.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS06320 -3.3 -4.2 OmpH family outer membrane protein compare
PFLU_RS20540 -3.3 -13.2 phosphoribosylanthranilate isomerase compare
PFLU_RS23070 -3.3 -1.7 50S ribosomal protein L32 compare
PFLU_RS23310 -3.3 -9.6 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS29515 -3.3 -13.9 RidA family protein compare
PFLU_RS25735 -3.2 -7.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS24330 -3.2 -5.7 phosphogluconate dehydratase compare
PFLU_RS08065 -3.2 -10.8 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS23585 -3.2 -10.4 GntP family permease compare
PFLU_RS26770 -3.2 -15.6 DedA family protein compare
PFLU_RS09535 -3.2 -1.6 TIGR03750 family conjugal transfer protein compare
PFLU_RS28165 -3.2 -13.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS04445 -3.2 -7.0 ABC transporter substrate-binding protein compare
PFLU_RS04440 -3.2 -8.8 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS24790 -3.1 -6.3 tetratricopeptide repeat protein compare
PFLU_RS09055 -3.1 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS27370 -3.1 -13.9 anthranilate phosphoribosyltransferase compare
PFLU_RS03765 -3.1 -11.8 sulfate adenylyltransferase subunit CysD compare
PFLU_RS23305 -3.0 -12.3 arginine N-succinyltransferase compare
PFLU_RS04565 -3.0 -1.6 TMEM165/GDT1 family protein compare
PFLU_RS26735 -3.0 -10.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS03770 -3.0 -14.2 sulfate adenylyltransferase subunit CysN compare
PFLU_RS07785 -3.0 -10.6 VacJ family lipoprotein compare
PFLU_RS25730 -2.9 -18.2 PAS domain S-box protein compare
PFLU_RS19175 -2.9 -10.6 trigger factor compare
PFLU_RS18645 -2.9 -2.0 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS28655 -2.9 -15.2 HAD family hydrolase compare
PFLU_RS27640 -2.9 -2.7 alpha/beta fold hydrolase compare
PFLU_RS21495 -2.9 -2.8 TlpA family protein disulfide reductase compare
PFLU_RS08410 -2.9 -7.9 HTH-type transcriptional regulator CysB compare
PFLU_RS09980 -2.9 -17.4 peptidase S41 compare
PFLU_RS25920 -2.8 -3.5 outer membrane protein assembly factor BamE compare
PFLU_RS29095 -2.8 -19.6 polyphosphate kinase 1 compare
PFLU_RS27620 -2.7 -15.8 acyl-CoA dehydrogenase compare
PFLU_RS01965 -2.7 -1.9 ATP-dependent protease subunit HslV compare
PFLU_RS23725 -2.7 -14.0 glucose-6-phosphate dehydrogenase compare
PFLU_RS04715 -2.7 -6.5 D-alanine--D-alanine ligase compare
PFLU_RS08155 -2.7 -4.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS28650 -2.7 -8.4 RNA pyrophosphohydrolase compare
PFLU_RS03980 -2.7 -9.4 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS02370 -2.7 -9.7 glycosyltransferase compare
PFLU_RS30160 -2.6 -4.0 ParB/RepB/Spo0J family partition protein compare
PFLU_RS06055 -2.6 -1.6 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS28965 -2.6 -10.7 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS00415 -2.6 -1.8 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS25755 -2.6 -4.6 pantoate--beta-alanine ligase compare
PFLU_RS25715 -2.6 -11.9 RNA polymerase-binding protein DksA compare
PFLU_RS01685 -2.6 -4.4 nitrogen regulation protein NR(I) compare
PFLU_RS21060 -2.6 -4.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS01610 -2.6 -12.8 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS03970 -2.6 -10.3 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS27445 -2.6 -14.5 phosphotransferase compare
PFLU_RS10430 -2.5 -3.4 peptidase compare
PFLU_RS25190 -2.5 -3.4 hypothetical protein compare
PFLU_RS25360 -2.5 -7.3 glutamate 5-kinase compare
PFLU_RS03555 -2.5 -1.3 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS14820 -2.4 -6.2 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS26020 -2.4 -12.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS27650 -2.4 -13.2 biotin synthase BioB compare
PFLU_RS24025 -2.4 -9.8 quinolinate synthase NadA compare
PFLU_RS04325 -2.4 -15.4 ribonuclease G compare
PFLU_RS01895 -2.4 -6.0 phosphoribosyl-ATP diphosphatase compare
PFLU_RS24085 -2.3 -3.5 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS28195 -2.3 -13.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS01285 -2.3 -1.5 HAMP domain-containing protein compare
PFLU_RS26595 -2.3 -1.5 lipoprotein compare
PFLU_RS01900 -2.3 -7.5 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS14805 -2.3 -2.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS24785 -2.3 -9.1 outer membrane protein assembly factor BamB compare
PFLU_RS07225 -2.3 -14.4 L-aspartate oxidase compare
PFLU_RS19165 -2.2 -5.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS13665 -2.2 -1.6 MarR family transcriptional regulator compare
PFLU_RS28725 -2.2 -9.8 DUF2059 domain-containing protein compare
PFLU_RS24475 -2.2 -15.9 AmpG family muropeptide MFS transporter compare
PFLU_RS24325 -2.2 -10.9 glucokinase compare
PFLU_RS27645 -2.2 -10.7 8-amino-7-oxononanoate synthase compare
PFLU_RS28325 -2.2 -8.4 energy transducer TonB compare
PFLU_RS06555 -2.2 -8.8 OmpA family protein compare
PFLU_RS27305 -2.2 -5.9 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS20515 -2.2 -4.5 amidophosphoribosyltransferase compare
PFLU_RS07275 -2.2 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS01960 -2.1 -1.5 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS17950 -2.1 -2.9 hypothetical protein compare
PFLU_RS02460 -2.1 -10.2 alpha/beta fold hydrolase compare
PFLU_RS13540 -2.1 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS28390 -2.1 -8.0 methionine biosynthesis protein MetW compare
PFLU_RS04220 -2.0 -8.8 FadR family transcriptional regulator compare
PFLU_RS20765 -2.0 -2.8 hypothetical protein compare
PFLU_RS18670 -2.0 -2.2 NADH-quinone oxidoreductase subunit M compare
PFLU_RS01605 -1.9 -6.3 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS27630 -1.9 -6.8 dethiobiotin synthase compare
PFLU_RS02980 -1.9 -2.5 precorrin-8X methylmutase compare
PFLU_RS20580 -1.9 -10.2 3-isopropylmalate dehydratase large subunit compare
PFLU_RS18395 -1.9 -1.8 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS20520 -1.9 -8.4 colicin V production protein CvpA compare
PFLU_RS03610 -1.9 -6.5 redox-regulated ATPase YchF compare
PFLU_RS00535 -1.9 -1.8 DUF1127 domain-containing protein compare
PFLU_RS02775 -1.9 -1.9 urease accessory protein UreF compare
PFLU_RS18665 -1.9 -3.6 NADH-quinone oxidoreductase subunit L compare
PFLU_RS18620 -1.9 -4.6 NADH-quinone oxidoreductase subunit B compare
PFLU_RS14810 -1.8 -2.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS26905 -1.8 -8.3 transcriptional regulator NrdR compare
PFLU_RS01625 -1.8 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS18675 -1.8 -2.1 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS31010 -1.8 -1.8 transposase compare
PFLU_RS18615 -1.8 -2.6 NADH-quinone oxidoreductase subunit A compare
PFLU_RS25585 -1.8 -1.2 exodeoxyribonuclease V subunit alpha compare
PFLU_RS27635 -1.8 -7.4 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS29310 -1.8 -1.5 accessory factor UbiK family protein compare
PFLU_RS18585 -1.8 -2.4 high frequency lysogenization protein HflD compare
PFLU_RS23680 -1.8 -12.0 long-chain fatty acid--CoA ligase compare
PFLU_RS04195 -1.7 -3.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS08160 -1.7 -6.4 sugar transferase compare
PFLU_RS24095 -1.7 -3.0 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS19170 -1.7 -3.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS31310 -1.7 -2.4 phage tail protein compare
PFLU_RS27475 -1.7 -6.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS12145 -1.7 -2.5 nuclear transport factor 2 family protein compare
PFLU_RS28310 -1.7 -1.2 response regulator compare
PFLU_RS04835 -1.7 -1.2 hypothetical protein compare
PFLU_RS07245 -1.7 -6.3 DegQ family serine endoprotease compare
PFLU_RS20565 -1.7 -9.1 3-isopropylmalate dehydrogenase compare
PFLU_RS01620 -1.7 -8.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS24090 -1.7 -3.3 Holliday junction branch migration protein RuvA compare
PFLU_RS30730 -1.7 -2.2 helix-turn-helix domain-containing protein compare
PFLU_RS29275 -1.7 -5.1 DUF484 family protein compare
PFLU_RS09670 -1.6 -2.1 integrating conjugative element protein compare
PFLU_RS18625 -1.6 -6.2 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS25740 -1.6 -5.5 polynucleotide adenylyltransferase PcnB compare
PFLU_RS04470 -1.6 -8.1 histidinol dehydrogenase compare
PFLU_RS18000 -1.6 -2.1 AhpC/TSA family protein compare
PFLU_RS01485 -1.6 -9.0 cellulase compare
PFLU_RS23745 -1.6 -4.6 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
PFLU_RS31100 -1.6 -3.4 preprotein translocase subunit SecG compare
PFLU_RS11525 -1.6 -4.4 GntR family transcriptional regulator compare
PFLU_RS22070 -1.6 -5.0 phosphoribosylglycinamide formyltransferase compare
PFLU_RS04650 -1.6 -10.4 ABC transporter substrate-binding protein compare
PFLU_RS24335 -1.5 -8.3 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS06855 -1.5 -2.8 helix-turn-helix transcriptional regulator compare
PFLU_RS11670 -1.5 -3.2 SDR family oxidoreductase compare
PFLU_RS24255 -1.5 -7.6 pyruvate kinase compare
PFLU_RS20285 -1.5 -5.3 MerR family transcriptional regulator compare
PFLU_RS02355 -1.5 -5.8 GNAT family N-acetyltransferase compare
PFLU_RS27380 -1.5 -8.5 anthranilate synthase component I compare
PFLU_RS28690 -1.5 -8.7 FAD-binding oxidoreductase compare
PFLU_RS20660 -1.4 -7.0 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS07255 -1.4 -2.8 sulfurtransferase TusA family protein compare
PFLU_RS20510 -1.4 -8.5 O-succinylhomoserine sulfhydrylase compare
PFLU_RS18080 -1.4 -3.7 helix-turn-helix transcriptional regulator compare
PFLU_RS04150 -1.4 -4.3 DUF1043 family protein compare
PFLU_RS09100 -1.4 -4.0 HAMP domain-containing protein compare
PFLU_RS24320 -1.4 -3.9 response regulator transcription factor compare
PFLU_RS24765 -1.4 -10.3 2-isopropylmalate synthase compare
PFLU_RS29975 -1.4 -2.1 ATP-binding cassette domain-containing protein compare
PFLU_RS22725 -1.4 -2.7 transcriptional regulator compare
PFLU_RS15610 -1.4 -4.3 helix-turn-helix transcriptional regulator compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas fluorescens SBW25-INTG

For nitrogen source D-Glucose across organisms