Experiment set3IT092 for Dyella japonica UNC79MFTsu3.2

Compare to:

N-Acetyl-D-glucosamine nitrogen source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS19025 -7.1 -4.9 homoserine O-succinyltransferase compare
ABZR86_RS14100 -6.6 -7.9 DNA adenine methylase compare
ABZR86_RS10425 -6.2 -6.0 pyrroline-5-carboxylate reductase compare
ABZR86_RS10715 -6.2 -15.7 serine hydroxymethyltransferase compare
ABZR86_RS06705 -6.1 -7.2 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS00660 -5.7 -6.8 recombinase RecA compare
ABZR86_RS06000 -5.6 -8.9 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS15940 -5.4 -11.0 ketol-acid reductoisomerase compare
ABZR86_RS02225 -5.3 -7.7 prephenate dehydratase compare
ABZR86_RS18615 -5.3 -3.7 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS10840 -5.2 -5.1 Holliday junction branch migration protein RuvA compare
ABZR86_RS12070 -5.2 -6.8 anthranilate phosphoribosyltransferase compare
ABZR86_RS08685 -5.2 -8.1 glutamate 5-kinase compare
ABZR86_RS09075 -5.2 -2.2 NrsF family protein compare
ABZR86_RS15950 -5.1 -9.9 3-isopropylmalate dehydrogenase compare
ABZR86_RS09145 -5.1 -2.7 hypothetical protein compare
ABZR86_RS08000 -5.1 -17.4 tryptophan synthase subunit beta compare
ABZR86_RS11840 -5.1 -11.7 ATP-dependent DNA helicase RecG compare
ABZR86_RS10475 -5.0 -6.7 shikimate kinase compare
ABZR86_RS08340 -5.0 -7.7 adenylosuccinate synthase compare
ABZR86_RS06715 -5.0 -8.1 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS15945 -4.9 -5.1 dihydroxy-acid dehydratase compare
ABZR86_RS07665 -4.9 -4.8 exodeoxyribonuclease V subunit beta compare
ABZR86_RS11570 -4.9 -8.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR86_RS17180 -4.9 -12.9 glycosyltransferase compare
ABZR86_RS05550 -4.9 -3.4 lipopolysaccharide assembly protein LapB compare
ABZR86_RS05875 -4.9 -8.4 cysteine synthase A compare
ABZR86_RS02220 -4.9 -17.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS06270 -4.8 -7.6 glycosyltransferase family 9 protein compare
ABZR86_RS18655 -4.8 -8.0 transketolase compare
ABZR86_RS12005 -4.8 -3.3 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS08680 -4.8 -10.6 glutamate-5-semialdehyde dehydrogenase compare
ABZR86_RS19865 -4.7 -4.5 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS09635 -4.6 -4.7 phosphoglycerate dehydrogenase compare
ABZR86_RS17085 -4.6 -6.4 type II 3-dehydroquinate dehydratase compare
ABZR86_RS15935 -4.6 -13.9 biosynthetic-type acetolactate synthase large subunit compare
ABZR86_RS08715 -4.6 -14.9 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
ABZR86_RS19030 -4.5 -7.3 cystathionine gamma-synthase compare
ABZR86_RS16795 -4.5 -19.1 glutamate synthase large subunit compare
ABZR86_RS05995 -4.5 -14.8 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS06735 -4.4 -6.4 ATP phosphoribosyltransferase compare
ABZR86_RS06275 -4.4 -3.6 DUF6165 family protein compare
ABZR86_RS08730 -4.4 -8.6 N-acetylornithine carbamoyltransferase compare
ABZR86_RS14700 -4.3 -6.3 glucose-6-phosphate dehydrogenase compare
ABZR86_RS09885 -4.3 -2.9 trypsin-like peptidase domain-containing protein compare
ABZR86_RS12065 -4.3 -7.7 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS08695 -4.3 -12.2 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
ABZR86_RS06710 -4.2 -7.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS07020 -4.2 -8.7 NAD(P)-dependent alcohol dehydrogenase compare
ABZR86_RS18780 -4.2 -4.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR86_RS16800 -4.2 -12.6 FAD-dependent oxidoreductase compare
ABZR86_RS15955 -4.2 -8.2 3-isopropylmalate dehydratase small subunit compare
ABZR86_RS13515 -4.1 -6.5 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS05885 -4.1 -9.2 LysR substrate-binding domain-containing protein compare
ABZR86_RS02230 -4.1 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS12605 -4.1 -4.1 thioredoxin TrxA compare
ABZR86_RS09935 -4.1 -2.7 DUF4105 domain-containing protein compare
ABZR86_RS02815 -4.1 -15.2 asparagine synthase B compare
ABZR86_RS08710 -4.1 -6.4 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS06725 -4.1 -7.8 histidinol-phosphate transaminase compare
ABZR86_RS15460 -4.1 -3.9 type I glutamate--ammonia ligase compare
ABZR86_RS15640 -4.1 -2.8 orotate phosphoribosyltransferase compare
ABZR86_RS00570 -4.0 -5.7 acetoacetyl-CoA reductase compare
ABZR86_RS06730 -4.0 -7.4 histidinol dehydrogenase compare
ABZR86_RS12885 -4.0 -3.9 magnesium-translocating P-type ATPase compare
ABZR86_RS12215 -4.0 -5.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS06630 -4.0 -3.2 phosphopyruvate hydratase compare
ABZR86_RS05820 -3.9 -5.6 GntR family transcriptional regulator compare
ABZR86_RS08700 -3.9 -6.4 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS14985 -3.9 -7.9 shikimate dehydrogenase compare
ABZR86_RS15315 -3.9 -11.0 phenylalanine 4-monooxygenase compare
ABZR86_RS19800 -3.9 -10.4 RNase adapter RapZ compare
ABZR86_RS11555 -3.9 -11.8 phosphoenolpyruvate carboxylase compare
ABZR86_RS11085 -3.8 -8.6 ATP-binding protein compare
ABZR86_RS02885 -3.8 -11.4 sulfate ABC transporter permease subunit CysT compare
ABZR86_RS14690 -3.8 -7.0 phosphogluconate dehydratase compare
ABZR86_RS07015 -3.8 -8.5 AraC family transcriptional regulator compare
ABZR86_RS21575 -3.8 -9.2 [protein-PII] uridylyltransferase compare
ABZR86_RS10215 -3.8 -10.6 inositol monophosphatase family protein compare
ABZR86_RS13850 -3.8 -6.5 phosphoribosylamine--glycine ligase compare
ABZR86_RS13920 -3.8 -13.8 CDP-glycerol glycerophosphotransferase family protein compare
ABZR86_RS15960 -3.7 -9.7 3-isopropylmalate dehydratase large subunit compare
ABZR86_RS08250 -3.7 -2.9 phosphate signaling complex protein PhoU compare
ABZR86_RS07660 -3.7 -7.1 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS06775 -3.7 -17.3 amidophosphoribosyltransferase compare
ABZR86_RS15980 -3.7 -6.6 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS15975 -3.6 -11.8 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS16610 -3.6 -5.8 hypothetical protein compare
ABZR86_RS08010 -3.6 -9.9 phosphoribosylanthranilate isomerase compare
ABZR86_RS11075 -3.6 -12.9 response regulator compare
ABZR86_RS15965 -3.6 -5.8 branched-chain amino acid transaminase compare
ABZR86_RS00830 -3.6 -9.5 glucose-6-phosphate isomerase compare
ABZR86_RS11845 -3.6 -12.4 RidA family protein compare
ABZR86_RS06700 -3.6 -6.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABZR86_RS05900 -3.6 -11.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABZR86_RS16050 -3.6 -9.7 SIS domain-containing protein compare
ABZR86_RS15515 -3.6 -5.6 nitrogen regulation protein NR(I) compare
ABZR86_RS10480 -3.5 -2.7 3-dehydroquinate synthase compare
ABZR86_RS07215 -3.5 -5.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
ABZR86_RS11880 -3.5 -4.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR86_RS08705 -3.5 -7.9 N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (from data) compare
ABZR86_RS19790 -3.5 -5.8 HPr family phosphocarrier protein compare
ABZR86_RS12435 -3.5 -10.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS11885 -3.4 -4.3 ATP-binding cassette domain-containing protein compare
ABZR86_RS05700 -3.4 -5.2 SsrA-binding protein SmpB compare
ABZR86_RS16045 -3.4 -6.6 N-acetylglucosamine-6-phosphate deacetylase compare
ABZR86_RS02245 -3.4 -16.8 excinuclease ABC subunit UvrC compare
ABZR86_RS09750 -3.4 -21.4 excinuclease ABC subunit UvrB compare
ABZR86_RS18715 -3.4 -7.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABZR86_RS19860 -3.4 -10.5 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS10830 -3.4 -3.6 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS09380 -3.3 -6.6 response regulator transcription factor compare
ABZR86_RS05905 -3.3 -7.3 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABZR86_RS00910 -3.3 -17.2 excinuclease ABC subunit UvrA compare
ABZR86_RS12180 -3.3 -14.0 anthranilate synthase component I compare
ABZR86_RS18450 -3.3 -3.9 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS01825 -3.3 -14.3 replication-associated recombination protein A compare
ABZR86_RS11870 -3.3 -9.9 phospholipid-binding protein MlaC compare
ABZR86_RS16965 -3.2 -12.6 DNA helicase II compare
ABZR86_RS07585 -3.2 -12.3 homocysteine S-methyltransferase family protein compare
ABZR86_RS10160 -3.2 -11.1 response regulator transcription factor compare
ABZR86_RS02895 -3.1 -6.6 ABC transporter ATP-binding protein compare
ABZR86_RS08040 -3.1 -8.5 chorismate synthase compare
ABZR86_RS07590 -3.1 -14.0 methionine synthase compare
ABZR86_RS02890 -3.1 -5.9 sulfate ABC transporter permease subunit CysW compare
ABZR86_RS06260 -3.1 -3.6 MBL fold metallo-hydrolase compare
ABZR86_RS05890 -3.0 -10.7 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase compare
ABZR86_RS19560 -3.0 -4.7 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) compare
ABZR86_RS05665 -3.0 -10.3 DNA repair protein RecN compare
ABZR86_RS18675 -3.0 -5.4 phosphoglycerate kinase compare
ABZR86_RS19785 -3.0 -13.3 phosphoenolpyruvate--protein phosphotransferase compare
ABZR86_RS15970 -2.9 -8.5 2-isopropylmalate synthase compare
ABZR86_RS02880 -2.9 -11.9 sulfate ABC transporter substrate-binding protein compare
ABZR86_RS08845 -2.9 -7.9 DNA repair protein RadA compare
ABZR86_RS12780 -2.9 -4.4 pteridine reductase compare
ABZR86_RS05895 -2.9 -11.1 phosphoadenylyl-sulfate reductase compare
ABZR86_RS15985 -2.9 -6.0 homoserine dehydrogenase compare
ABZR86_RS09845 -2.8 -10.4 DUF1631 domain-containing protein compare
ABZR86_RS18775 -2.8 -3.3 nucleotidyltransferase family protein compare
ABZR86_RS11875 -2.8 -11.3 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR86_RS20775 -2.6 -6.5 TetR/AcrR family transcriptional regulator compare
ABZR86_RS12790 -2.6 -6.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
ABZR86_RS10530 -2.6 -1.9 H-NS histone family protein compare
ABZR86_RS06355 -2.6 -3.6 folate-binding protein YgfZ compare
ABZR86_RS07180 -2.6 -5.6 RNA polymerase sigma factor RpoE compare
ABZR86_RS13915 -2.6 -12.8 glycosyltransferase family 2 protein compare
ABZR86_RS18880 -2.5 -10.2 glycine cleavage system protein GcvH compare
ABZR86_RS15330 -2.4 -9.0 TetR/AcrR family transcriptional regulator compare
ABZR86_RS06720 -2.4 -5.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS06030 -2.4 -1.7 transcription termination factor NusA compare
ABZR86_RS22135 -2.4 -4.5 hypothetical protein compare
ABZR86_RS08865 -2.4 -2.0 30S ribosomal protein S18 compare
ABZR86_RS19235 -2.4 -4.5 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS08305 -2.4 -13.7 aminomethyl-transferring glycine dehydrogenase compare
ABZR86_RS19225 -2.3 -3.5 site-specific tyrosine recombinase XerD compare
ABZR86_RS18875 -2.2 -7.0 glycine cleavage system aminomethyltransferase GcvT compare
ABZR86_RS15025 -2.2 -3.5 tyrosine recombinase XerC compare
ABZR86_RS06580 -2.2 -3.4 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS07995 -2.2 -5.8 tryptophan synthase subunit alpha compare
ABZR86_RS21420 -2.1 -10.3 alpha/beta fold hydrolase compare
ABZR86_RS10205 -2.1 -4.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS13245 -2.1 -13.4 DEAD/DEAH box helicase compare
ABZR86_RS05635 -2.1 -9.3 sodium:calcium antiporter compare
ABZR86_RS00685 -2.1 -2.3 carbon storage regulator CsrA compare
ABZR86_RS16345 -2.1 -11.2 NADP-dependent isocitrate dehydrogenase compare
ABZR86_RS09415 -2.1 -7.5 ABC transporter ATP-binding protein compare
ABZR86_RS14285 -2.0 -3.3 antibiotic biosynthesis monooxygenase compare
ABZR86_RS02305 -2.0 -1.1 hypothetical protein compare
ABZR86_RS20980 -2.0 -1.9 hypothetical protein compare
ABZR86_RS12200 -2.0 -6.3 ribulose-phosphate 3-epimerase compare
ABZR86_RS13895 -2.0 -11.4 glycosyltransferase family 39 protein compare
ABZR86_RS19725 -1.9 -13.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR86_RS21480 -1.9 -6.8 arginase family protein compare
ABZR86_RS06940 -1.9 -7.8 hypothetical protein compare
ABZR86_RS19815 -1.9 -10.6 RNA polymerase factor sigma-54 compare
ABZR86_RS09395 -1.9 -8.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS06740 -1.8 -1.4 YerC/YecD family TrpR-related protein compare
ABZR86_RS21020 -1.8 -6.9 ATP-binding protein compare
ABZR86_RS19795 -1.8 -5.0 PTS sugar transporter subunit IIA compare
ABZR86_RS14845 -1.8 -7.3 YafY family protein compare
ABZR86_RS01970 -1.8 -9.8 hypothetical protein compare
ABZR86_RS12960 -1.8 -2.9 hypothetical protein compare
ABZR86_RS08905 -1.8 -7.4 carbonate dehydratase compare
ABZR86_RS08135 -1.8 -1.8 hypothetical protein compare
ABZR86_RS02185 -1.7 -6.8 tRNA 2-thiouridine(34) synthase MnmA compare
ABZR86_RS05545 -1.7 -9.0 glycosyltransferase family 4 protein compare
ABZR86_RS06685 -1.7 -6.6 acireductone dioxygenase compare
ABZR86_RS02500 -1.6 -2.2 hypothetical protein compare
ABZR86_RS09410 -1.6 -5.0 FtsX-like permease family protein compare
ABZR86_RS02450 -1.6 -4.9 hypothetical protein compare
ABZR86_RS05540 -1.6 -6.9 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABZR86_RS17390 -1.6 -8.8 VOC family protein compare
ABZR86_RS10710 -1.6 -1.6 transcriptional regulator NrdR compare
ABZR86_RS16760 -1.6 -1.8 phage tail terminator-like protein compare
ABZR86_RS11860 -1.6 -10.6 VacJ family lipoprotein compare
ABZR86_RS02810 -1.6 -3.2 hypothetical protein compare
ABZR86_RS18960 -1.5 -5.0 TetR/AcrR family transcriptional regulator compare
ABZR86_RS13910 -1.5 -9.5 glycosyltransferase compare
ABZR86_RS09405 -1.5 -5.7 TolC family protein compare
ABZR86_RS07140 -1.5 -5.4 DNA repair protein RecO compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source N-Acetyl-D-Glucosamine in Dyella japonica UNC79MFTsu3.2

For nitrogen source N-Acetyl-D-Glucosamine across organisms