Experiment set3IT092 for Dyella japonica UNC79MFTsu3.2

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N-Acetyl-D-glucosamine nitrogen source

Group: nitrogen source
Media: RCH2_defined_Glucose_noNitrogen + N-Acetyl-D-Glucosamine (20 mM), pH=7
Culturing: Dyella79_ML3, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
Growth: about 4.3 generations
By: Adam on 17-May-17
Media components: 0.1 g/L Potassium Chloride, 0.6 g/L Sodium phosphate monobasic monohydrate, 20 mM D-Glucose, 30 mM PIPES sesquisodium salt, Wolfe's mineral mix (0.03 g/L Magnesium Sulfate Heptahydrate, 0.015 g/L Nitrilotriacetic acid, 0.01 g/L Sodium Chloride, 0.005 g/L Manganese (II) sulfate monohydrate, 0.001 g/L Cobalt chloride hexahydrate, 0.001 g/L Zinc sulfate heptahydrate, 0.001 g/L Calcium chloride dihydrate, 0.001 g/L Iron (II) sulfate heptahydrate, 0.00025 g/L Nickel (II) chloride hexahydrate, 0.0002 g/L Aluminum potassium sulfate dodecahydrate, 0.0001 g/L Copper (II) sulfate pentahydrate, 0.0001 g/L Boric Acid, 0.0001 g/L Sodium Molybdate Dihydrate, 0.003 mg/L Sodium selenite pentahydrate), Wolfe's vitamin mix (0.1 mg/L Pyridoxine HCl, 0.05 mg/L 4-Aminobenzoic acid, 0.05 mg/L Lipoic acid, 0.05 mg/L Nicotinic Acid, 0.05 mg/L Riboflavin, 0.05 mg/L Thiamine HCl, 0.05 mg/L calcium pantothenate, 0.02 mg/L biotin, 0.02 mg/L Folic Acid, 0.001 mg/L Cyanocobalamin)
Growth plate: 1768 B1

Specific Phenotypes

For 4 genes in this experiment

For nitrogen source N-Acetyl-D-Glucosamine in Dyella japonica UNC79MFTsu3.2

For nitrogen source N-Acetyl-D-Glucosamine across organisms

SEED Subsystems

Subsystem #Specific
DNA repair, bacterial DinG and relatives 1
Methionine Salvage 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
3-methylthiopropanoate biosynthesis 1 1 1
S-methyl-5-thio-α-D-ribose 1-phosphate degradation I 7 7 1
L-methionine salvage cycle III 11 11 1
L-methionine salvage cycle II (plants) 11 8 1
L-methionine salvage cycle I (bacteria and plants) 12 10 1